BAC Information

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BAC

Clone NameB6Ng01-151L24
Chromosome3 (Build37)
Map Location 49,401,326 - 49,546,057
singlet/doubletdoublet
Overlap geneLOC100039587, LOC638779
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579
Downstream genePcdh18, LOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151L24.bB6Ng01-151L24.g
ACCDH947491DH947492
length1,0851,118
definitionDH947491|Mus musculus domesticus DNA, BAC clone: B6Ng01-151L24, 5' end.DH947492|Mus musculus domesticus DNA, BAC clone: B6Ng01-151L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,544,972 - 49,546,057)(49,401,326 - 49,402,445)
sequence
gaattctcttccaaaatagataattctgcaccagcatgttgattcacaaa
tcctcccttttacctttgtctacagaatgcagggctaaccttttatggac
taacttgtcacaggtcccttgtgttgtgacttcttcttcactaatttctt
tcttagtatttagcagtctatggctgaagacttagtttgtcatttaaatt
ctttctcccatcttttatgaatcacactcactgctggctaatgacataat
tattaaagctcttgtcttactgaaggaatagggaaagtgacacatggtaa
aataggtttggattctttgtttcattcttttcctactaatgtgagagcat
tctcaaagctaaattgaaattattgtcctgttgaaattcaaagcataggg
ggtgtatgtgaggggctagtgatttcagacagaatgggctgcatctgtga
agagcatatctcaagcctagcatgctctcacacagctgaggcaggtgttc
cccactctgcaatagattcgtatgctttcttttctgttctgatactcctg
ttccaattcagtgtgtctagatagcatggcatcacatcatcaaagacgaa
ggagacgctgggtggcgattaatgttttgtgtgaaaattaaaaccaaact
acaaacggtttaaagatttgtgtgaagcttgaaaacattctaaatgtgta
catatttaaaaagagaaagcagaggtaaatgaactctctgagtgtgtctg
tctgtctttccgtctgaccatctgtctattttgtgtgcatttttcacatg
tgtatggatacacatgcattcgtaagtgtgatctgaggttgatgtctaga
attatcctccattgctcttccaactcattcaatgaggtagggaggtcttt
caaactaagagatcattgttatggttgatcttactagctattttgatatg
agacttccctatctctatccaccatataggattgcaagagtctaccatgc
accttttacatggaatctgtgggtctaacctccagtccacaatcttgtct
gctaagtcttagaatatccaagccatttcctccaa
gaattctcttcctccccacccctgctgcccctctctctgtgtatgtgtgt
gtgtatgagagagaatgtgcatgagcacacatgcgcgcgcgcactcacac
acacacgtgcacacacacacgcacatttatactatgaaaattaattgcaa
atgaaaaagtacagtcccctgacaataacttcaagacattttattgacat
acttttctttctctataatttcctgatggaacacatttttaatatccttg
aatttgtgcttcagggagcatagaagaggtaagaatgcttttaaattagg
ctgtatgccatgaaattagtttaattttatatgaaataccatgaaaaaca
atattcatatgaaagtcactcagataataaattcacaatgcatataaaat
cccaaaacatactgactatatcattggccccattgtactcaataaaaatg
ggaaaatggcaactgctacactccaaagtactgtactctatgatgtcatg
catttggaggatattatgtctatatctttcttccaaagaacaaattcaat
gatataaaaaagtagctcgcagaaaaaaagaaatttttttgtctcttgtc
tgacagacgcaattacttcaccatctaaggcatgcatgtggtaaatactg
gatttgtaggaccaccacagataattacagcattttaggcacactgagaa
gagagaaaaaaaactgcttatccgcataatgtccttgtccagtgatcttt
taagaacgggacagtggaagctaacttgtagtgtctttaaggtaagggaa
gtttatatttttttaaagggcaatagttttttttttaaacaggctgattt
gcagcacagaaataaagcattataaaaattggaataaatgtcttaaaagc
attctgttatttgaaacacaactttacatggtacattttcttgttctaac
cctcactaactctgcaaatatctgttgaattcaagctgtctcaagggtaa
aagtataaagttcaatgttttctgtgattacttgagcttcagaagcgtct
ggatctgttggtctatgcaattctgtctaaatcctcaagtgtctgtcagc
ccagtacacatgaacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49544972_49546057
seq2: B6Ng01-151L24.b_47_1131 (reverse)

seq1  TTGGA-GAAATGGCTTGGATA-TCTAAGGACTAAGCAGACAAGAATGTGG  48
      ||||| ||||||||||||||| ||||| |||| ||||||||||| |||||
seq2  TTGGAGGAAATGGCTTGGATATTCTAA-GACTTAGCAGACAAGATTGTGG  49

seq1  ACTGGA-GTTAGACCCACAGATTCCATGTAAAAGGTGGCCATGGTAGACT  97
      |||||| ||||||||||||||||||||||||||||||  |||||||||| 
seq2  ACTGGAGGTTAGACCCACAGATTCCATGTAAAAGGTG--CATGGTAGAC-  96

seq1  TCTTGCAATCCTATATGGTGGATAGAGATAGGGAAGTCTCATATCAAAAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAATCCTATATGGTGGATAGAGATAGGGAAGTCTCATATCAAAAT  146

seq1  AGCTAGTAAGATCAACCATAACAATGATCTCTTAGTTTGAAAGACCTCCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTAAGATCAACCATAACAATGATCTCTTAGTTTGAAAGACCTCCC  196

seq1  TACCTCATTGAATGAGTTGGAAGAGCAATGGAGGATAATTCTAGACATCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATTGAATGAGTTGGAAGAGCAATGGAGGATAATTCTAGACATCA  246

seq1  ACCTCAGATCACACTTACGAATGCATGTGTATCCATACACATGTGAAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGATCACACTTACGAATGCATGTGTATCCATACACATGTGAAAAA  296

seq1  TGCACACAAAATAGACAGATGGTCAGACGGAAAGACAGACAGACACACTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAAAATAGACAGATGGTCAGACGGAAAGACAGACAGACACACTC  346

seq1  AGAGAGTTCATTTACCTCTGCTTTCTCTTTTTAAATATGTACACATTTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTCATTTACCTCTGCTTTCTCTTTTTAAATATGTACACATTTAG  396

seq1  AATGTTTTCAAGCTTCACACAAATCTTTAAACCGTTTGTAGTTTGGTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCAAGCTTCACACAAATCTTTAAACCGTTTGTAGTTTGGTTTT  446

seq1  AATTTTCACACAAAACATTAATCGCCACCCAGCGTCTCCTTCGTCTTTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCACACAAAACATTAATCGCCACCCAGCGTCTCCTTCGTCTTTGA  496

seq1  TGATGTGATGCCATGCTATCTAGACACACTGAATTGGAACAGGAGTATCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGATGCCATGCTATCTAGACACACTGAATTGGAACAGGAGTATCA  546

seq1  GAACAGAAAAGAAAGCATACGAATCTATTGCAGAGTGGGGAACACCTGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAAAGAAAGCATACGAATCTATTGCAGAGTGGGGAACACCTGCC  596

seq1  TCAGCTGTGTGAGAGCATGCTAGGCTTGAGATATGCTCTTCACAGATGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTGTGAGAGCATGCTAGGCTTGAGATATGCTCTTCACAGATGCA  646

seq1  GCCCATTCTGTCTGAAATCACTAGCCCCTCACATACACCCCCTATGCTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTCTGTCTGAAATCACTAGCCCCTCACATACACCCCCTATGCTTT  696

seq1  GAATTTCAACAGGACAATAATTTCAATTTAGCTTTGAGAATGCTCTCACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAACAGGACAATAATTTCAATTTAGCTTTGAGAATGCTCTCACA  746

seq1  TTAGTAGGAAAAGAATGAAACAAAGAATCCAAACCTATTTTACCATGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGAAAAGAATGAAACAAAGAATCCAAACCTATTTTACCATGTGT  796

seq1  CACTTTCCCTATTCCTTCAGTAAGACAAGAGCTTTAATAATTATGTCATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCCTATTCCTTCAGTAAGACAAGAGCTTTAATAATTATGTCATT  846

seq1  AGCCAGCAGTGAGTGTGATTCATAAAAGATGGGAGAAAGAATTTAAATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCAGTGAGTGTGATTCATAAAAGATGGGAGAAAGAATTTAAATGA  896

seq1  CAAACTAAGTCTTCAGCCATAGACTGCTAAATACTAAGAAAGAAATTAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAAGTCTTCAGCCATAGACTGCTAAATACTAAGAAAGAAATTAGT  946

seq1  GAAGAAGAAGTCACAACACAAGGGACCTGTGACAAGTTAGTCCATAAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGTCACAACACAAGGGACCTGTGACAAGTTAGTCCATAAAAG  996

seq1  GTTAGCCCTGCATTCTGTAGACAAAGGTAAAAGGGAGGATTTGTGAATCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCCTGCATTCTGTAGACAAAGGTAAAAGGGAGGATTTGTGAATCA  1046

seq1  ACATGCTGGTGCAGAATTATCTATTTTGGAAGAGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGGTGCAGAATTATCTATTTTGGAAGAGAATTC  1085

seq1: chr3_49401326_49402445
seq2: B6Ng01-151L24.g_66_1183

seq1  GAATTCTCTTCCTCCCCACCCCTGCTGCCCCTCTCTCTGTGTATGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTCCCCACCCCTGCTGCCCCTCTCTCTGTGTATGTGTGT  50

seq1  GTGTATGAGAGAGAATGTGCATGAGCACACATGCGCGCGCGCACTCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGAGAGAGAATGTGCATGAGCACACATGCGCGCGCGCACTCACAC  100

seq1  ACACACGTGCACACACACACGCACATTTATACTATGAAAATTAATTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGTGCACACACACACGCACATTTATACTATGAAAATTAATTGCAA  150

seq1  ATGAAAAAGTACAGTCCCCTGACAATAACTTCAAGACATTTTATTGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGTACAGTCCCCTGACAATAACTTCAAGACATTTTATTGACAT  200

seq1  ACTTTTCTTTCTCTATAATTTCCTGATGGAACACATTTTTAATATCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTTTCTCTATAATTTCCTGATGGAACACATTTTTAATATCCTTG  250

seq1  AATTTGTGCTTCAGGGAGCATAGAAGAGGTAAGAATGCTTTTAAATTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGCTTCAGGGAGCATAGAAGAGGTAAGAATGCTTTTAAATTAGG  300

seq1  CTGTATGCCATGAAATTAGTTTAATTTTATATGAAATACCATGAAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGCCATGAAATTAGTTTAATTTTATATGAAATACCATGAAAAACA  350

seq1  ATATTCATATGAAAGTCACTCAGATAATAAATTCACAATGCATATAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATATGAAAGTCACTCAGATAATAAATTCACAATGCATATAAAAT  400

seq1  CCCAAAACATACTGACTATATCATTGGCCCCATTGTACTCAATAAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACATACTGACTATATCATTGGCCCCATTGTACTCAATAAAAATG  450

seq1  GGAAAATGGCAACTGCTACACTCCAAAGTACTGTACTCTATGATGTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGGCAACTGCTACACTCCAAAGTACTGTACTCTATGATGTCATG  500

seq1  CATTTGGAGGATATTATGTCTATATCTTTCTTCCAAAGAACAAATTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGAGGATATTATGTCTATATCTTTCTTCCAAAGAACAAATTCAAT  550

seq1  GATATAAAAAAGTAGCTCGCAGAAAAAAAGAAATTTTTTTGTCTCTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAAAAAGTAGCTCGCAGAAAAAAAGAAATTTTTTTGTCTCTTGTC  600

seq1  TGACAGACGCAATTACTTCACCATCTAAGGCATGCATGTGGTAAATACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACGCAATTACTTCACCATCTAAGGCATGCATGTGGTAAATACTG  650

seq1  GATTTGTAGGACCACCACAGATAATTACAGCATTTTAGGCACACTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTAGGACCACCACAGATAATTACAGCATTTTAGGCACACTGAGAA  700

seq1  GAGAGAAAAAAAACTGCTTATCCGCATAATGTCCTTGTCCAGTGATCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAAAAACTGCTTATCCGCATAATGTCCTTGTCCAGTGATCTTT  750

seq1  TAAGAACGGGACAGTGGAAGCTAACTTGTAGTGTCTTTAAGGTAAGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACGGGACAGTGGAAGCTAACTTGTAGTGTCTTTAAGGTAAGGGAA  800

seq1  GTTTATATTTTTTTAAAGGGCAATAGTTTTTTTTTTAAACAGGCTGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATTTTTTTAAAGGGCAATAGTTTTTTTTTTAAACAGGCTGATTT  850

seq1  GCAGCACAGAAATAAAGCATTATAAAAATTGGAATAAATGTCTTAAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACAGAAATAAAGCATTATAAAAATTGGAATAAATGTCTTAAAAGC  900

seq1  ATTCTGTTATTTGAAACACAACTTTACATGGTACA-TTTCTTG-TCTAAC  948
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  ATTCTGTTATTTGAAACACAACTTTACATGGTACATTTTCTTGTTCTAAC  950

seq1  CCTCACATAACTCTGCAAATATCTGTTGAATTCAAGCTGTCTCAAGGGTA  998
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAC-TAACTCTGCAAATATCTGTTGAATTCAAGCTGTCTCAAGGGTA  999

seq1  AAAGTATAAAGTTCAATG-TTTCTGTTGGATTTACTTGAGCTCCAG-AGC  1046
      |||||||||||||||||| |||||||  || ||||||||||| ||| |||
seq2  AAAGTATAAAGTTCAATGTTTTCTGT--GA-TTACTTGAGCTTCAGAAGC  1046

seq1  GTCTGGATCTGTTGGTC-ATGGCATTCTGTCTTAAACCCTCAAGTGTCTG  1095
      ||||||||||||||||| |||  |||||||| |||| |||||||||||||
seq2  GTCTGGATCTGTTGGTCTATGCAATTCTGTC-TAAATCCTCAAGTGTCTG  1095

seq1  TCAGGCCCAGTTACACCAGAACAAT  1120
      ||| |||||| |||||  |||||||
seq2  TCA-GCCCAG-TACACATGAACAAT  1118