BAC Information

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BAC

Clone NameB6Ng01-152A24
Chromosome3 (Build37)
Map Location 135,380,474 - 135,508,973
singlet/doubletdoublet
Overlap geneENSMUSG00000045520, Slc39a8
Upstream geneTacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1
Downstream geneLOC100039350, LOC383923, Bank1, LOC100039477, LOC668868, Ppp3ca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152A24.bB6Ng01-152A24.g
ACCDH947730DH947731
length1,0971,095
definitionDH947730|Mus musculus domesticus DNA, BAC clone: B6Ng01-152A24, 5' end.DH947731|Mus musculus domesticus DNA, BAC clone: B6Ng01-152A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,380,474 - 135,381,565)(135,507,891 - 135,508,973)
sequence
gaattctttgtttagccctgtaccccatttttaatagggttatttgattc
tctggagtctaacctcttgagttctttgcatatactggatattagccctc
tattggatggatgattggtaaagatcttttcccaatttattggttgcctt
tctgtcctattgacagtgtcctttgccttacagaagctttgcaattttat
gaggtcccatttgttgattctccatcttacagcacaagccattgctattc
tgttcaggaatttttcccctgtgcccatatgtttgaggctcttccccact
ttctccccttgcgtacacatccgtgactgggaggtacagtcttaagttag
cttaggcaccactgttatttccacaccgccctgggacctgttgtctgaga
tttgtttctctgagtgaagttattctatggccgaccacacttggtgctac
tttctgattaagcttatgcaaaaccagagtttttcgcatcctggtttcct
ttttttctattctaagcattgctcaagcttaaacactatgtgaattccca
ttcccgagctgtgaatcagggggcttttttttatatgagaaactcccctt
aaggacaatttgattgggattttaaaaagaggctccacccaacagccaaa
ggaaagagataccaagacttacacccaaacgttagatggagttgggggaa
agattgagggacctgaagaggacagggactccacagaaagatcaacaggg
ccaactaacctggacccttgggggctttcggaaacagaatcaccaaccag
agagcgaggacaggctggacctaggcatcctggcacatatgtagcagatg
agcaacttgatctttatgagggtcccccaaacacttgcagcaggggacct
gtccctgagtctgttgcatgtctgcctggtggattccacacaccttatct
gggcctcagtgggagaggatgtgccaagtcctgaagcaactcatgtggtg
tgtggggaaggggttgaaacaggtattgaagggaggggctccccctttct
ctcaaaagaagcagaaagggaaacgggtatgaacttggggtaggggg
gaattcctgggtcataaaaggtcctgggaaagcaactcaagggtgataac
caatcggtatcacattgagaagattcaccgcacttcccccagactgtcac
ggttatccaccaacggttttgctttttactgttttacatcatattcctat
tctctcgagtccctcccagactttgcagtgccttctaagcgctgtgccct
ggggactgactagtgtgcagacactgacatcagaggttgatatttgcccc
tctcagccacagtacactgatctggagcagggatgtacacagataccaaa
ggatgctactcacaatggtaaaaggggcttagatcacattactcacgaag
cccccaaatgatgctcaaaacggtcccagccaacaggttcacacattcct
gcttctgaggctgctgcccttttctcattacgcttcatctccagcagcca
ttaaggcatggaaggagagggagaaagatcgaaagctcctccccttgcgt
tttctacaaataaaatctgtatagtaaagtatcgctataatgatttgtct
tcttataatgaattcaaagagtatggcaagacttgaagcactaggtttcc
gatactcacgaggactctgcttggctgaattttcttctgagcttgggcct
cagccttgacgctccttgttacagggccagcatctccaggccctcgcaaa
gaccttgcagttgtttagaaagaatcctcccactagtaatggctgacgac
tttcaaatcaaactctccatctctgactcttagtacctttacattggcct
gcctttgaggtgaattctgtcctttaatcaaaatacttcctgtatttgtg
tttcttcttgataaagttctacccacaggtgcttcccgccccagctcctt
ggctgctgctccaagctgtttggagagactccagtctatgctttccccta
tagtgggtaattttgaatggacttcactgggccactgattacagtggggc
atattcaaggagggatgtttttcagattaaggtggagcattgaatcaatg
aacctccgtaaagaatggagaaaacattaacctaaattttatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_135380474_135381565
seq2: B6Ng01-152A24.b_36_1132

seq1  GAATTCTTTGTTTAGCCCTGTACCCCATTTTTAATAGGGTTATTTGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCCCTGTACCCCATTTTTAATAGGGTTATTTGATTC  50

seq1  TCTGGAGTCTAACCTCTTGAGTTCTTTGCATATACTGGATATTAGCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCTAACCTCTTGAGTTCTTTGCATATACTGGATATTAGCCCTC  100

seq1  TATTGGATGGATGATTGGTAAAGATCTTTTCCCAATTTATTGGTTGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATGGATGATTGGTAAAGATCTTTTCCCAATTTATTGGTTGCCTT  150

seq1  TCTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTAT  200

seq1  GAGGTCCCATTTGTTGATTCTCCATCTTACAGCACAAGCCATTGCTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTTGATTCTCCATCTTACAGCACAAGCCATTGCTATTC  250

seq1  TGTTCAGGAATTTTTCCCCTGTGCCCATATGTTTGAGGCTCTTCCCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGAATTTTTCCCCTGTGCCCATATGTTTGAGGCTCTTCCCCACT  300

seq1  TTCTCCCCTTGCGTACACATCCGTGACTGGGAGGTACAGTCTTAAGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCTTGCGTACACATCCGTGACTGGGAGGTACAGTCTTAAGTTAG  350

seq1  CTTAGGCACCACTGTTATTTCCACACCGCCCTGGGACCTGTTGTCTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCACCACTGTTATTTCCACACCGCCCTGGGACCTGTTGTCTGAGA  400

seq1  TTTGTTTCTCTGAGTGAAGTTATTCTATGGCCGACCACACTTGGTGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTCTGAGTGAAGTTATTCTATGGCCGACCACACTTGGTGCTAC  450

seq1  TTTCTGATTAAGCTTATGCAAAACCAGAGTTTTTCGCATCCTGGTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATTAAGCTTATGCAAAACCAGAGTTTTTCGCATCCTGGTTTCCT  500

seq1  TTTTTTCTATTCTAAGCATTGCTCAAGCTTAAACACTATGTGAATTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTATTCTAAGCATTGCTCAAGCTTAAACACTATGTGAATTCCCA  550

seq1  TTCCCGAGCTGTGAATCAGGGGGCTTTTTTTTATATGAGAAACTCCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGAGCTGTGAATCAGGGGGCTTTTTTTTATATGAGAAACTCCCCTT  600

seq1  AAGGACAATTTGATTGGGATTTTAAAAAGAGGCTCCACCCAACAGCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAATTTGATTGGGATTTTAAAAAGAGGCTCCACCCAACAGCCAAA  650

seq1  GGAAAGAGATACCAAGACTTACACCCAAACGTTAGATGGAGTTGGGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGATACCAAGACTTACACCCAAACGTTAGATGGAGTTGGGGGAA  700

seq1  AGATTGAGGGACCTGAAGAGGACAGGGACTCCACAGAAAGATCAACAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGGGACCTGAAGAGGACAGGGACTCCACAGAAAGATCAACAGGG  750

seq1  CCAACTAACCTGGACCCTTGGGGGCTTTCGGAAACAGAATCACCAACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAACCTGGACCCTTGGGGGCTTTCGGAAACAGAATCACCAACCAG  800

seq1  AGAGCGAGGACAGGCTGGACCTAGGCATCCTGGCACATATGTAGCAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGAGGACAGGCTGGACCTAGGCATCCTGGCACATATGTAGCAGATG  850

seq1  AGCAACTTGATCTTTATGAGGGTCCCCCAAACACTTGCAGCAGGGGGACC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCAACTTGATCTTTATGAGGGTCCCCCAAACACTTGCAGCA-GGGGACC  899

seq1  TGTCCCTGAGTCTGTTGCATGTCTGCCT-GTGGATTCCACACACCTTATC  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTCCCTGAGTCTGTTGCATGTCTGCCTGGTGGATTCCACACACCTTATC  949

seq1  T-GGCCTCAGTGGGAGAGGATGTGCCAAGTCCTGAAGCAACTTCATGT-G  997
      | ||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  TGGGCCTCAGTGGGAGAGGATGTGCCAAGTCCTGAAGCAAC-TCATGTGG  998

seq1  TGTGTGGG--AGGGGTTGACACAGGGTATG-AGGGAGGGGCTCCCCC-TT  1043
      ||||||||  ||||||||| |||||   || |||||||||||||||| ||
seq2  TGTGTGGGGAAGGGGTTGAAACAGGTATTGAAGGGAGGGGCTCCCCCTTT  1048

seq1  CTCTCAAAAGAGAAGCAGAAGGGGAACGGGGTA--GACTTGGGTGAGGGG  1091
      ||||||||  |||||||||| |||||  |||||   |||||||  |||||
seq2  CTCTCAAA--AGAAGCAGAAAGGGAAACGGGTATGAACTTGGGGTAGGGG  1096

seq1  G  1092
      |
seq2  G  1097

seq1: chr3_135507891_135508973
seq2: B6Ng01-152A24.g_66_1160 (reverse)

seq1  TCCATAAA--TTA-GTTAATGTTTTCTC--ATCTTTACTGAGG-TCATTG  44
      ||||||||  ||| ||||||||||||||   ||||||| |||| ||||||
seq2  TCCATAAAATTTAGGTTAATGTTTTCTCCATTCTTTACGGAGGTTCATTG  50

seq1  ATTCAAATGCT-CACCTT-ATCTG-AAAACAT-CCTCCT--GATATG-CC  87
      |||| |||||| |||||| ||||| ||||||| ||||||   ||||| ||
seq2  ATTC-AATGCTCCACCTTAATCTGAAAAACATCCCTCCTTGAATATGCCC  99

seq1  CACTGTAATCAGTGG-CCAGTGAAGTCCATTCAAAATTACCCACTATAGG  136
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACTGTAATCAGTGGCCCAGTGAAGTCCATTCAAAATTACCCACTATAGG  149

seq1  GGAAAGCATAGAACTGGAGTCTCTCCAAACAGCTTGGAGCAGCAGCCAAG  186
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCATAG-ACTGGAGTCTCTCCAAACAGCTTGGAGCAGCAGCCAAG  198

seq1  GAGCTGGGGCGGGAAGCACCTGTGGGTAGAACTTTATCAAGAAGAAACAC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGGCGGGAAGCACCTGTGGGTAGAACTTTATCAAGAAGAAACAC  248

seq1  AAATACAGGAAGTATTTTGATTAAAGGACAGAATTCACCTCAAAGGCAGG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGGAAGTATTTTGATTAAAGGACAGAATTCACCTCAAAGGCAGG  298

seq1  CCAATGTAAAGGTACTAAGAGTCAGAGATGGAGAGTTTGATTTGAAAGTC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTAAAGGTACTAAGAGTCAGAGATGGAGAGTTTGATTTGAAAGTC  348

seq1  GTCAGCCATTACTAGTGGGAGGATTCTTTCTAAACAACTGCAAGGTCTTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCATTACTAGTGGGAGGATTCTTTCTAAACAACTGCAAGGTCTTT  398

seq1  GCGAGGGCCTGGAGATGCTGGCCCTGTAACAAGGAGCGTCAAGGCTGAGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGGCCTGGAGATGCTGGCCCTGTAACAAGGAGCGTCAAGGCTGAGG  448

seq1  CCCAAGCTCAGAAGAAAATTCAGCCAAGCAGAGTCCTCGTGAGTATCGGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTCAGAAGAAAATTCAGCCAAGCAGAGTCCTCGTGAGTATCGGA  498

seq1  AACCTAGTGCTTCAAGTCTTGCCATACTCTTTGAATTCATTATAAGAAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGTGCTTCAAGTCTTGCCATACTCTTTGAATTCATTATAAGAAGA  548

seq1  CAAATCATTATAGCGATACTTTACTATACAGATTTTATTTGTAGAAAACG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATTATAGCGATACTTTACTATACAGATTTTATTTGTAGAAAACG  598

seq1  CAAGGGGAGGAGCTTTCGATCTTTCTCCCTCTCCTTCCATGCCTTAATGG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAGGAGCTTTCGATCTTTCTCCCTCTCCTTCCATGCCTTAATGG  648

seq1  CTGCTGGAGATGAAGCGTAATGAGAAAAGGGCAGCAGCCTCAGAAGCAGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAGATGAAGCGTAATGAGAAAAGGGCAGCAGCCTCAGAAGCAGG  698

seq1  AATGTGTGAACCTGTTGGCTGGGACCGTTTTGAGCATCATTTGGGGGCTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGAACCTGTTGGCTGGGACCGTTTTGAGCATCATTTGGGGGCTT  748

seq1  CGTGAGTAATGTGATCTAAGCCCCTTTTACCATTGTGAGTAGCATCCTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTAATGTGATCTAAGCCCCTTTTACCATTGTGAGTAGCATCCTTT  798

seq1  GGTATCTGTGTACATCCCTGCTCCAGATCAGTGTACTGTGGCTGAGAGGG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGTGTACATCCCTGCTCCAGATCAGTGTACTGTGGCTGAGAGGG  848

seq1  GCAAATATCAACCTCTGATGTCAGTGTCTGCACACTAGTCAGTCCCCAGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATCAACCTCTGATGTCAGTGTCTGCACACTAGTCAGTCCCCAGG  898

seq1  GCACAGCGCTTAGAAGGCACTGCAAAGTCTGGGAGGGACTCGAGAGAATA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCGCTTAGAAGGCACTGCAAAGTCTGGGAGGGACTCGAGAGAATA  948

seq1  GGAATATGATGTAAAACAGTAAAAAGCAAAACCGTTGGTGGATAACCGTG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGATGTAAAACAGTAAAAAGCAAAACCGTTGGTGGATAACCGTG  998

seq1  ACAGTCTGGGGGAAGTGCGGTGAATCTTCTCAATGTGATACCGATTGGTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGGGGGAAGTGCGGTGAATCTTCTCAATGTGATACCGATTGGTT  1048

seq1  ATCACCCTTGAGTTGCTTTCCCAGGACCTTTTATGACCCAGGAATTC  1083
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTTGAGTTGCTTTCCCAGGACCTTTTATGACCCAGGAATTC  1095