BAC Information

Click to search

BAC

Clone NameB6Ng01-152C21
Chromosome3 (Build37)
Map Location 93,447,297 - 93,578,561
singlet/doubletdoublet
Overlap geneTdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563
Upstream geneLce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623
Downstream geneTdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152C21.bB6Ng01-152C21.g
ACCDH947817DH947818
length1,114703
definitionDH947817|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C21, 5' end.DH947818|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,577,467 - 93,578,561)(93,447,297 - 93,447,999)
sequence
gaattcagcaacacagtgaaaggtggtcaggccaggcggtggtggtgcat
gcctttaatcccagcacttgggaagcagaggcaggcagatttctgagttc
aaggccagcccagtctacagagggagttccaggacagccagggctacaca
gagaaaccctgtctgggaaaaaacaaaaaacaaacaaacaaaaaaaaaaa
aaaaagaaaagtggtcaggccagaaagattctatagagttggggattaga
ctggtagttgtggttttacaagaagtgaaggagaagggaagatctacagg
catcttccatgcttcccctcaggattggacagtgagttatcagtgagtgt
gtctggagttaggctctagaatacagcaatgagttagcctgtgggatctt
aaaaaagaattgtctctgggactcgaaggagatgcacgcaggcagaaagt
aaggctacagctggtgttatgacatagttctatagatgagactggttgtt
gattttggaagagcggtgttggtcatatctgtctagctcctaaaatccct
taaggcatttgaatgatgattctaagaaaacactctgtgcagaagccagg
gagtggaatctttcatccaccaagtggggatgggactccaccattgactt
ccacccggagcttttagagacctcagaagcatgaactgcaatgaaatgga
gagcccgagtcttcagctgctctgtgctgtggaggtcagccacgatgaga
gtgtgtgcagcattctccacagagaggttcctgcagagggaatcctcaca
tatgaccttcaagccctcaaggccatacttctcagcagctgccagcacat
cacaggccatggagtggctatggagggttggagccttcccagtgtagatg
aagtccatcatctccttaaagacttgaaaatccagctcctggatctcaaa
gcagtttgctagtctcctcctccatttgatgtcaaacattgcttctgaaa
actggagagcgagctgctaggatggcttggtgaggcccggatttcatggc
cagctaccaacagggagcagttgttgaagaggggaatctcccacagcttg
cctagggcatctgt
gaattctctatttacacattaggtcttttattatgaaatttctgggatat
atatattgaagatcagccctcagtcagatgaaaggccatgaaagggtgct
gctaactggcttgtttctcatagcatgctcagcctaccatctaaggatca
ctagcacacatatgacaccacccacaatgggctgggttcttcccccatca
gtcactaattaagcaaatgccttgcagttaaatattctggaggcattttt
ctcaattaaggttccctcctctcagatacctctagtttgtgatgttagta
tgagaccggccagcatgtttagtaaatctggggatcccttgacttattaa
taatttgcacattctccttaacgatgatgtgcctgctcaactgctgtttt
aataattgctcaacctgtgtttttggcttgtttgtttgttttttatttaa
tgtttgtgtgtttggtttcattttagatattaattcatttaagaaggatg
ccatcaattcaaataaactcgtttcccagagcagccttactctgtatcct
cggctaccacttcagcttaggttcttctgcctctgatcttgaatataatt
ttcagaaggacacctttgactttaccttcatagttcatcttttggggagt
catatttaagggtgtggatgttgaagtgagatttgtgagtttgttttgga
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93577467_93578561
seq2: B6Ng01-152C21.b_65_1161 (reverse)

seq1  ACAGATGACCTAGGCAAGCTGTGGGAGAATCCCCTCTTCACAGACTGCTC  50
      ||||||| |||||||||||||||||||| |||||||||||   |||||||
seq2  ACAGATGCCCTAGGCAAGCTGTGGGAGATTCCCCTCTTCAACAACTGCTC  50

seq1  CCTGTTGGTAGCTGGCCATGAAATCAGGG-CTCACAAAGCCATCCTAGCA  99
      ||||||||||||||||||||||||| ||| ||||| ||||||||||||||
seq2  CCTGTTGGTAGCTGGCCATGAAATCCGGGCCTCACCAAGCCATCCTAGCA  100

seq1  GCTCGCTCTCCAGTTTTCAG-AGCCATGTTTGAACATCAAATGGAGGA-G  147
      |||||||||||||||||||| ||| ||||||| ||||||||||||||| |
seq2  GCTCGCTCTCCAGTTTTCAGAAGCAATGTTTG-ACATCAAATGGAGGAGG  149

seq1  AGACTAGCAAACTGCTTTGAGATCCAGGAGCTGGATTTTCAAGTCTTTAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCAAACTGCTTTGAGATCCAGGAGCTGGATTTTCAAGTCTTTAA  199

seq1  GGAGATGATGGACTTCATCTACACTGGGAAGGCTCCAACCCTCCATAGCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGATGGACTTCATCTACACTGGGAAGGCTCCAACCCTCCATAGCC  249

seq1  ACTCCATGGCCTGTGATGTGCTGGCAGCTGCTGAGAAGTATGGCCTTGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGGCCTGTGATGTGCTGGCAGCTGCTGAGAAGTATGGCCTTGAG  299

seq1  GGCTTGAAGGTCATATGTGAGGATTCCCTCTGCAGGAACCTCTCTGTGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAAGGTCATATGTGAGGATTCCCTCTGCAGGAACCTCTCTGTGGA  349

seq1  GAATGCTGCACACACTCTCATCGTGGCTGACCTCCACAGCACAGAGCAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGCACACACTCTCATCGTGGCTGACCTCCACAGCACAGAGCAGC  399

seq1  TGAAGACTCGGGCTCTCCATTTCATTGCAGTTCATGCTTCTGAGGTCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCGGGCTCTCCATTTCATTGCAGTTCATGCTTCTGAGGTCTCT  449

seq1  AAAAGCTCCGGGTGGAAGTCAATGGTGGAGTCCCATCCCCACTTGGTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCCGGGTGGAAGTCAATGGTGGAGTCCCATCCCCACTTGGTGGA  499

seq1  TGAAAGATTCCACTCCCTGGCTTCTGCACAGAGTGTTTTCTTAGAATCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATTCCACTCCCTGGCTTCTGCACAGAGTGTTTTCTTAGAATCAT  549

seq1  CATTCAAATGCCTTAAGGGATTTTAGGAGCTAGACAGATATGACCAACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAATGCCTTAAGGGATTTTAGGAGCTAGACAGATATGACCAACAC  599

seq1  CGCTCTTCCAAAATCAACAACCAGTCTCATCTATAGAACTATGTCATAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTCCAAAATCAACAACCAGTCTCATCTATAGAACTATGTCATAAC  649

seq1  ACCAGCTGTAGCCTTACTTTCTGCCTGCGTGCATCTCCTTCGAGTCCCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGTAGCCTTACTTTCTGCCTGCGTGCATCTCCTTCGAGTCCCAG  699

seq1  AGACAATTCTTTTTTAAGATCCCACAGGCTAACTCATTGCTGTATTCTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTCTTTTTTAAGATCCCACAGGCTAACTCATTGCTGTATTCTAG  749

seq1  AGCCTAACTCCAGACACACTCACTGATAACTCACTGTCCAATCCTGAGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACTCCAGACACACTCACTGATAACTCACTGTCCAATCCTGAGGG  799

seq1  GAAGCATGGAAGATGCCTGTAGATCTTCCCTTCTCCTTCACTTCTTGTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGGAAGATGCCTGTAGATCTTCCCTTCTCCTTCACTTCTTGTAA  849

seq1  AACCACAACTACCAGTCTAATCCCCAACTCTATAGAATCTTTCTGGCCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAACTACCAGTCTAATCCCCAACTCTATAGAATCTTTCTGGCCTG  899

seq1  ACCACTTTTCTTTTTTTTTTTTTTTTGTTTGTTTGTTTTTTGTTTTTTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTTCTTTTTTTTTTTTTTTTGTTTGTTTGTTTTTTGTTTTTTCC  949

seq1  CAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCCCTCTGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCCCTCTGTA  999

seq1  GACTGGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCTTCCCAAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCTTCCCAAGT  1049

seq1  GCTGGGATTAAAGGCATGCACCACCACCGCCTGGCCTGACCACCTTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCATGCACCACCACCGCCTGGCCTGACCACCTTTC  1097

seq1: chr3_93447297_93447999
seq2: B6Ng01-152C21.g_67_769

seq1  GAATTCTCTATTTACACATTAGGTCTTTTATTATGAAATTTCTGGGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTTACACATTAGGTCTTTTATTATGAAATTTCTGGGATAT  50

seq1  ATATATTGAAGATCAGCCCTCAGTCAGATGAAAGGCCATGAAAGGGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGAAGATCAGCCCTCAGTCAGATGAAAGGCCATGAAAGGGTGCT  100

seq1  GCTAACTGGCTTGTTTCTCATAGCATGCTCAGCCTACCATCTAAGGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGGCTTGTTTCTCATAGCATGCTCAGCCTACCATCTAAGGATCA  150

seq1  CTAGCACACATATGACACCACCCACAATGGGCTGGGTTCTTCCCCCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACACATATGACACCACCCACAATGGGCTGGGTTCTTCCCCCATCA  200

seq1  GTCACTAATTAAGCAAATGCCTTGCAGTTAAATATTCTGGAGGCATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAATTAAGCAAATGCCTTGCAGTTAAATATTCTGGAGGCATTTTT  250

seq1  CTCAATTAAGGTTCCCTCCTCTCAGATACCTCTAGTTTGTGATGTTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTAAGGTTCCCTCCTCTCAGATACCTCTAGTTTGTGATGTTAGTA  300

seq1  TGAGACCGGCCAGCATGTTTAGTAAATCTGGGGATCCCTTGACTTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCGGCCAGCATGTTTAGTAAATCTGGGGATCCCTTGACTTATTAA  350

seq1  TAATTTGCACATTCTCCTTAACGATGATGTGCCTGCTCAACTGCTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCACATTCTCCTTAACGATGATGTGCCTGCTCAACTGCTGTTTT  400

seq1  AATAATTGCTCAACCTGTGTTTTTGGCTTGTTTGTTTGTTTTTTATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGCTCAACCTGTGTTTTTGGCTTGTTTGTTTGTTTTTTATTTAA  450

seq1  TGTTTGTGTGTTTGGTTTCATTTTAGATATTAATTCATTTAAGAAGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGTTTGGTTTCATTTTAGATATTAATTCATTTAAGAAGGATG  500

seq1  CCATCAATTCAAATAAACTCGTTTCCCAGAGCAGCCTTACTCTGTATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATTCAAATAAACTCGTTTCCCAGAGCAGCCTTACTCTGTATCCT  550

seq1  CGGCTACCACTTCAGCTTAGGTTCTTCTGCCTCTGATCTTGAATATAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTACCACTTCAGCTTAGGTTCTTCTGCCTCTGATCTTGAATATAATT  600

seq1  TTCAGAAGGACACCTTTGACTTTACCTTCATAGTTCATCTTTTGGGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGGACACCTTTGACTTTACCTTCATAGTTCATCTTTTGGGGAGT  650

seq1  CATATTTAAGGGTGTGGATGTTGAAGTGAGATTTGTGAGTTTGTTTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAAGGGTGTGGATGTTGAAGTGAGATTTGTGAGTTTGTTTTGGA  700

seq1  TTT  703
      |||
seq2  TTT  703