BAC Information

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BAC

Clone NameB6Ng01-152L19
Chromosome3 (Build37)
Map Location 158,818,865 - 158,972,907
singlet/doubletdoublet
Overlap genenone
Upstream geneLrrc7, LOC100041008, LOC668905
Downstream geneLOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152L19.bB6Ng01-152L19.g
ACCDH948237DH948238
length9861,092
definitionDH948237|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L19, 5' end.DH948238|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,972,226 - 158,972,907)(158,818,865 - 158,819,952)
sequence
gaattcacttcctaagcacataccccagaggcattaccttatgtctacag
ctaattttctttctttcaaaatagtctagtttagagaaaatagagatgtc
aaccctgcagacacataccacagagctatgaggagtccgagagaccaatg
gaggctctgaagggtgacttttgggacccagcacctagcatgagcattag
ctgcagcccatgttgggcaggtaccaggatgtagggaagtgttgagacac
tgctctaagcatggaaaagcacaacccagacctgcaatgaggccagggtc
ttggggttctcagactcttggatatccaggcactgctgggagttgcagaa
gtgcaaagaatatagtcaaggtcccacaggctggtcctgagagtcaatat
ctttttccagggaggaatgtctgggaaagaaagcttattgactaagccct
ccagacctctaggtacctcattagcatggagaactctgttttgggcctat
atgactcacaaagaacctgtaccaagttctctgcctagttgcaaaatcct
cctgactctgagcaacagcctgttatccaagatgagtctgggcaatagtc
tagtatttatggtgctttagaaatcagaaatcttgaaccagatcaacaac
tcattggaatgattataattttagattagttttgttggcatttagcctag
accttgccccatagttacctgacaacagccaggtgtatctgacttactaa
aaaggggctgctcatcctattctctctcttgctctcttgctatatcctct
tgctcctggtctccccactcccctcccacttctttcttcagtgctcacga
ctgacctctatccccccctgcctttatctgtctctactaacccctcaact
ctcctccccatgtcctgaataactctattctatactacattgtcatgtgg
ttggtccctcaggggcatggacctgcagaggcaccc
gaattcagggacaaatcaaggacgcccagtctccccatatctattcaata
tagtactagaagtgctagctagaataagaagacaacaaaaagatatcaag
gtgatacaaattggcaaagaagaaataaaggtatcactatttgcagatga
tataatggtatacataagagactccgaaagttctaccagagaacttctcc
agctgataaacaaattcagcaaagtggccaaatataaaattaactcaaat
aaatcagtagcctccctttatataaatgataaacacgctgagaaagaaat
tatggaggcagagaatttttaatgttagcgtgaaaatatggtaactctgt
aactacgtgagaaaaaattcccaattcaaattcaaattttccatttactt
tatggaatacaagcactgtatatggcatctttcagaatcaaagtttgtat
ttccatttatctaagtcaagaagtctatgttcttgtattttaaggagtag
cccatgaaaaaccaacacaaacacacacacacacacacacacacacacac
acatacatatatatatattgtttaaaataaaatgatgtatatacatatat
tgtttagaaaatgtaaaattgtattatcagtttgtttttacaaataagaa
ttttcattctatagtgttttcctagctgcaatactagaacattcaaagaa
agctgaatagatagagtcccttgtaaactaaaatgattatgttttctaaa
atgaagacatgcctgtagtatttgcaaagtgccagtggccagttttaaat
ggaccatgctttcagttgcagcaacactgaacactttgctcaatgaaaaa
gttcatacaaggccatttaaagcaatgtttcttgcttatttattatttag
ttttgttatgtaaaaaaaaataaaagaaaattatccaataaaaaattctg
gccttagaaggaaggatggaataaaggaaagaaatgaaggatgaagaaag
gaagaagaaggaagacgctgtgcttctctgatgggaccatacagatatag
gcagcatacagtaaattaatataggtgaataaccccatatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158972226_158972907
seq2: B6Ng01-152L19.b_43_724 (reverse)

seq1  AAACTAATCTAAAATTATAATCATTCCAATGAGTTGTTGATCTGGTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATCTAAAATTATAATCATTCCAATGAGTTGTTGATCTGGTTCAA  50

seq1  GATTTCTGATTTCTAAAGCACCATAAATACTAGACTATTGCCCAGACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGATTTCTAAAGCACCATAAATACTAGACTATTGCCCAGACTCA  100

seq1  TCTTGGATAACAGGCTGTTGCTCAGAGTCAGGAGGATTTTGCAACTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATAACAGGCTGTTGCTCAGAGTCAGGAGGATTTTGCAACTAGGC  150

seq1  AGAGAACTTGGTACAGGTTCTTTGTGAGTCATATAGGCCCAAAACAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTTGGTACAGGTTCTTTGTGAGTCATATAGGCCCAAAACAGAGT  200

seq1  TCTCCATGCTAATGAGGTACCTAGAGGTCTGGAGGGCTTAGTCAATAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGCTAATGAGGTACCTAGAGGTCTGGAGGGCTTAGTCAATAAGC  250

seq1  TTTCTTTCCCAGACATTCCTCCCTGGAAAAAGATATTGACTCTCAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCCAGACATTCCTCCCTGGAAAAAGATATTGACTCTCAGGACC  300

seq1  AGCCTGTGGGACCTTGACTATATTCTTTGCACTTCTGCAACTCCCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGGGACCTTGACTATATTCTTTGCACTTCTGCAACTCCCAGCAG  350

seq1  TGCCTGGATATCCAAGAGTCTGAGAACCCCAAGACCCTGGCCTCATTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGATATCCAAGAGTCTGAGAACCCCAAGACCCTGGCCTCATTGCA  400

seq1  GGTCTGGGTTGTGCTTTTCCATGCTTAGAGCAGTGTCTCAACACTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGGTTGTGCTTTTCCATGCTTAGAGCAGTGTCTCAACACTTCCCT  450

seq1  ACATCCTGGTACCTGCCCAACATGGGCTGCAGCTAATGCTCATGCTAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGGTACCTGCCCAACATGGGCTGCAGCTAATGCTCATGCTAGGT  500

seq1  GCTGGGTCCCAAAAGTCACCCTTCAGAGCCTCCATTGGTCTCTCGGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTCCCAAAAGTCACCCTTCAGAGCCTCCATTGGTCTCTCGGACTC  550

seq1  CTCATAGCTCTGTGGTATGTGTCTGCAGGGTTGACATCTCTATTTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGCTCTGTGGTATGTGTCTGCAGGGTTGACATCTCTATTTTCTCT  600

seq1  AAACTAGACTATTTTGAAAGAAAGAAAATTAGCTGTAGACATAAGGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGACTATTTTGAAAGAAAGAAAATTAGCTGTAGACATAAGGTAAT  650

seq1  GCCTCTGGGGTATGTGCTTAGGAAGTGAATTC  682
      ||||||||||||||||||||||||||||||||
seq2  GCCTCTGGGGTATGTGCTTAGGAAGTGAATTC  682

seq1: chr3_158818865_158819952
seq2: B6Ng01-152L19.g_71_1162

seq1  GAATTCAGGGACAAATCAAGGACGCCCAGTCTCCCCATATCTATTCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACAAATCAAGGACGCCCAGTCTCCCCATATCTATTCAATA  50

seq1  TAGTACTAGAAGTGCTAGCTAGAATAAGAAGACAACAAAAAGATATCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTAGAAGTGCTAGCTAGAATAAGAAGACAACAAAAAGATATCAAG  100

seq1  GTGATACAAATTGGCAAAGAAGAAATAAAGGTATCACTATTTGCAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACAAATTGGCAAAGAAGAAATAAAGGTATCACTATTTGCAGATGA  150

seq1  TATAATGGTATACATAAGAGACTCCGAAAGTTCTACCAGAGAACTTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGTATACATAAGAGACTCCGAAAGTTCTACCAGAGAACTTCTCC  200

seq1  AGCTGATAAACAAATTCAGCAAAGTGGCCAAATATAAAATTAACTCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATAAACAAATTCAGCAAAGTGGCCAAATATAAAATTAACTCAAAT  250

seq1  AAATCAGTAGCCTCCCTTTATATAAATGATAAACACGCTGAGAAAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTAGCCTCCCTTTATATAAATGATAAACACGCTGAGAAAGAAAT  300

seq1  TATGGAGGCAGAGAATTTTTAATGTTAGCGTGAAAATATGGTAACTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGGCAGAGAATTTTTAATGTTAGCGTGAAAATATGGTAACTCTGT  350

seq1  AACTACGTGAGAAAAAATTCCCAATTCAAATTCAAATTTTCCATTTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACGTGAGAAAAAATTCCCAATTCAAATTCAAATTTTCCATTTACTT  400

seq1  TATGGAATACAAGCACTGTATATGGCATCTTTCAGAATCAAAGTTTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATACAAGCACTGTATATGGCATCTTTCAGAATCAAAGTTTGTAT  450

seq1  TTCCATTTATCTAAGTCAAGAAGTCTATGTTCTTGTATTTTAAGGAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTATCTAAGTCAAGAAGTCTATGTTCTTGTATTTTAAGGAGTAG  500

seq1  CCCATGAAAAACCAACACAAACACACACACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAAAAACCAACACAAACACACACACACACACACACACACACACAC  550

seq1  ACATACATATATATATATTGTTTAAAATAAAATGATGTATATACATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATATATATATTGTTTAAAATAAAATGATGTATATACATATAT  600

seq1  TGTTTAGAAAATGTAAAATTGTATTATCAGTTTGTTTTTACAAATAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAAAATGTAAAATTGTATTATCAGTTTGTTTTTACAAATAAGAA  650

seq1  TTTTCATTCTATAGTG-TTTCCTAGCTGCAATACTAGAACATTCAAAGAA  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTCATTCTATAGTGTTTTCCTAGCTGCAATACTAGAACATTCAAAGAA  700

seq1  AGCTGAATAGATAGAGTCCCTTGTAAACTAAAATGATTATGTTTTCTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAGATAGAGTCCCTTGTAAACTAAAATGATTATGTTTTCTAAA  750

seq1  ATGAAGACATGCCTGTAGTATTTGCAAAGTGCCAGTGGCCAGTTTTAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACATGCCTGTAGTATTTGCAAAGTGCCAGTGGCCAGTTTTAAAT  800

seq1  GGACCATGC-TTCAGTTGCAGCAACACTGAACACTTTGCTCAATGAAAAA  848
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATGCTTTCAGTTGCAGCAACACTGAACACTTTGCTCAATGAAAAA  850

seq1  GTTCATACAAGGCCATTTAAAGCAATGTTTCTTGCTTATTTATTATTTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATACAAGGCCATTTAAAGCAATGTTTCTTGCTTATTTATTATTTAG  900

seq1  -TTTGTTATGTAAAAAAAAATAAAAGAAAA-TATCCAATAAAAAATTCTG  946
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTGTTATGTAAAAAAAAATAAAAGAAAATTATCCAATAAAAAATTCTG  950

seq1  G-CTAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  995
      | || |||| ||| ||  |||  || ||||||||  ||| | | ||||||
seq2  GCCTTAGAAGGAAGGATGGAATAAAGGAAAGAAATGAAGGATG-AAGAAA  999

seq1  GAAAGAAAGAAAGAAAGACGCTGTGCTTCTCTGATGGGACCATACAGAAT  1045
      | |||||   ||| ||||||||||||||||||||||||||||||||| ||
seq2  GGAAGAA--GAAGGAAGACGCTGTGCTTCTCTGATGGGACCATACAG-AT  1046

seq1  ATA-GCAGCATACAGTAAAATTAATATA-GTG-ATAA-CCCATATGC  1088
      ||| |||||||||||| ||||||||||| ||| |||| |||||||||
seq2  ATAGGCAGCATACAGT-AAATTAATATAGGTGAATAACCCCATATGC  1092