BAC Information

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BAC

Clone NameB6Ng01-153F11
Chromosome4 (Build37)3 (Build37)
Map Location 65,627,129 - 65,628,20245,385,985 - 45,386,547
singlet/doubletsingletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153F11.bB6Ng01-153F11.g
ACCDH948682DH948683
length1,079827
definitionDH948682|Mus musculus domesticus DNA, BAC clone: B6Ng01-153F11, 5' end.DH948683|Mus musculus domesticus DNA, BAC clone: B6Ng01-153F11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,627,129 - 65,628,202)(45,385,985 - 45,386,547)
sequence
gaattctaggagtattaaggagagaaaggataaaatttttatttgcagat
caaacagaagactctagggctcaagtagggcttcttgtggctgcagactt
tgtttctagtatatgatgcatgaagaatgaatttgttctttatgtcctca
gaaagacttggtaagggaaagattgagagcatccagctctgcaaccacca
ggaccaatgattctccagtgatgccattctccatttgttctccttcatac
tcactgcttgtctttgtatgccttggggctcttgttctgccacacacatc
tgtgcatgatgtcatactgggatgattgtgattcataagaaagatcagta
gcccaagaatacttagcatcttatctcagtatcgaaacatccacacataa
aatgtaaatttataatgtatgcatgggtattcaggaaaaattccaaaaag
catatacatcatatacatgtatgtcaaagtgtcatcaacttatgagacag
gatgtagaaatgtgaaagaggttgtattttatatgtatcccttatgaata
cttatttcactcttgtaataatactgacagtgagtagcgttgtcctattt
ggaaagctgagaaggaataaaagtaaacttgagataaagttgtagtattg
ggtagatggttaagtggccaagaggagatcatttttcagttgacagaagt
atatcctcagactgctgttatagcatgtgtagtgatcccagtcaggcctc
aggaactatggcacattttgctttctctttacaagttattttaagatact
caacttccttattttttgtccacatattctgaagcatccagagccagaaa
ccatctatattttcacttggactatttaaggggcaagttcttcctttaac
ctacaagttgattcattgtgatagctaatattgattgccaagtgatagga
tcccctaaccatggagaaacacctctgagcatgtctgtggaggaattctt
tcattacgctatggatggtggaggatataaatttcttaggtagggagagc
actcttgtgtcgtgggtcttggactgaac
gaattcctgatctttccagagcttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtagcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaatccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgtttttggga
tttcttcaggatctgttgttatgtctccccttttcttttctgattttgtt
aattaggattttgtccctgtgccctttagttagtctagctaagtggttta
tctatcttgttgattttcccaaaagaaccaactcctcgtttggtttaatt
cttttgaatagtccttcttgtttccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65627129_65628202
seq2: B6Ng01-153F11.b_46_1124

seq1  GAATTCTAGGAGTATTAAGGAGAGAAAGGATAAAATTTTTATTTGCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAGTATTAAGGAGAGAAAGGATAAAATTTTTATTTGCAGAT  50

seq1  CAAACAGAAGACTCTAGGGCTCAAGTAGGGCTTCTTGTGGCTGCAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGAAGACTCTAGGGCTCAAGTAGGGCTTCTTGTGGCTGCAGACTT  100

seq1  TGTTTCTAGTATATGATGCATGAAGAATGAATTTGTTCTTTATGTCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAGTATATGATGCATGAAGAATGAATTTGTTCTTTATGTCCTCA  150

seq1  GAAAGACTTGGTAAGGGAAAGATTGAGAGCATCCAGCTCTGCAACCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTTGGTAAGGGAAAGATTGAGAGCATCCAGCTCTGCAACCACCA  200

seq1  GGACCAATGATTCTCCAGTGATGCCATTCTCCATTTGTTCTCCTTCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAATGATTCTCCAGTGATGCCATTCTCCATTTGTTCTCCTTCATAC  250

seq1  TCACTGCTTGTCTTTGTATGCCTTGGGGCTCTTGTTCTGCCACACACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTTGTCTTTGTATGCCTTGGGGCTCTTGTTCTGCCACACACATC  300

seq1  TGTGCATGATGTCATACTGGGATGATTGTGATTCATAAGAAAGATCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGATGTCATACTGGGATGATTGTGATTCATAAGAAAGATCAGTA  350

seq1  GCCCAAGAATACTTAGCATCTTATCTCAGTATCGAAACATCCACACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGAATACTTAGCATCTTATCTCAGTATCGAAACATCCACACATAA  400

seq1  AATGTAAATTTATAATGTATGCATGGGTATTCAGGAAAAATTCCAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATTTATAATGTATGCATGGGTATTCAGGAAAAATTCCAAAAAG  450

seq1  CATATACATCATATACATGTATGTCAAAGTGTCATCAACTTATGAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATCATATACATGTATGTCAAAGTGTCATCAACTTATGAGACAG  500

seq1  GATGTAGAAATGTGAAAGAGGTTGTATTTTATATGTATCCCTTATGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGAAATGTGAAAGAGGTTGTATTTTATATGTATCCCTTATGAATA  550

seq1  CTTATTTCACTCTTGTAATAATACTGACAGTGAGTAGCGTTGTCCTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCACTCTTGTAATAATACTGACAGTGAGTAGCGTTGTCCTATTT  600

seq1  GGAAAGCTGAGAAGGAATAAAAGTAAACTTGAGATAAAGTTGTAGTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTGAGAAGGAATAAAAGTAAACTTGAGATAAAGTTGTAGTATTG  650

seq1  GGTAGATGGTTAAGTGGCCAAGAGGAGATCATTTTTCAGTTGACAGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGGTTAAGTGGCCAAGAGGAGATCATTTTTCAGTTGACAGAAGT  700

seq1  ATATCCTCAGACTGCTGTTATAGCAATGTGTAGTGATCCCAGTCAGGCCT  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATATCCTCAGACTGCTGTTATAGC-ATGTGTAGTGATCCCAGTCAGGCCT  749

seq1  CAGGAACTATGGCACA-TTTGCTTTCTC-TTACAAGTTATTTTAAGATAC  798
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  CAGGAACTATGGCACATTTTGCTTTCTCTTTACAAGTTATTTTAAGATAC  799

seq1  TCAAC-TCCTTA-TTTTTGTCCACATATTCTGAAGCATCCAGAGCCAGGA  846
      ||||| |||||| ||||||||||||||||||||||||||||||||||| |
seq2  TCAACTTCCTTATTTTTTGTCCACATATTCTGAAGCATCCAGAGCCAGAA  849

seq1  ACCATCTATATTTTCAC-TGGACTATTTAA-GGGCAAGTTCTTCCTTTAA  894
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  ACCATCTATATTTTCACTTGGACTATTTAAGGGGCAAGTTCTTCCTTTAA  899

seq1  CCTACAAG-TGATTCATTGTGATAGCTAATATTGATTGCCAAGTTGATAG  943
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  CCTACAAGTTGATTCATTGTGATAGCTAATATTGATTGCCAAG-TGATAG  948

seq1  GATCCCCTAACCAT-GAGAAACACCTCTGAGCATGTCTGTGGAGGAATTC  992
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATCCCCTAACCATGGAGAAACACCTCTGAGCATGTCTGTGGAGGAATTC  998

seq1  -TTCATTACGCTAATGATGGTGGAGGAGATTAAGTTACTTAGGGTAGGGA  1041
       ||||||||||||  |||||||||||| | ||| || |||| ||||||||
seq2  TTTCATTACGCTATGGATGGTGGAGGATA-TAAATTTCTTA-GGTAGGGA  1046

seq1  GATGCACTCTTG-GCCGGTGGTCATGGACTGAAC  1074
      || ||||||||| | ||  |||| ||||||||||
seq2  GA-GCACTCTTGTGTCGTGGGTCTTGGACTGAAC  1079

seq1: chr3_45385985_45386547
seq2: B6Ng01-153F11.g_328_897 (reverse)

seq1  GTGGAAACAAGAAGAACTATTC-AAAGAATT-AACCAAACGAGGAGTTGG  48
      |||||||||||||| ||||||| |||||||| ||||||||||||||||||
seq2  GTGGAAACAAGAAGGACTATTCAAAAGAATTAAACCAAACGAGGAGTTGG  50

seq1  TTC-TTTGAGAAAATCAACAAGATAGATAAACC-CTTAGCTAGACTCACT  96
      ||| |||| |||||||||||||||||||||||| |||||||||||| |||
seq2  TTCTTTTGGGAAAATCAACAAGATAGATAAACCACTTAGCTAGACTAACT  100

seq1  AAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAA-GG  145
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  AAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAAAGAAAAGGG  150

seq1  GAGACATAACAACAGATCCTGAAGAAATCC--AAAACACCATCAGATCCT  193
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  GAGACATAACAACAGATCCTGAAGAAATCCCAAAAACACCATCAGATCCT  200

seq1  TCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGAC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGAC  250

seq1  AAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGA  300

seq1  CCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA  350

seq1  GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTC  393
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGATTTAGTGCAGAGTTC  400

seq1  TATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCA  450

seq1  CAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTA  493
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCTACTA  500

seq1  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC  550

seq1  AGACCAATTTCTCTTATGAA  563
      ||||||||||||||||||||
seq2  AGACCAATTTCTCTTATGAA  570