BAC Information

Click to search

BAC

Clone NameB6Ng01-154B22
Chromosome3 (Build37)
Map Location 93,818,492 - 93,972,952
singlet/doubletdoublet
Overlap geneLOC668359, LOC100042761, LOC433624, LOC668367, LOC433625
Upstream geneCrct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356
Downstream geneLOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B22.bB6Ng01-154B22.g
ACCDH949251DH949252
length1,13068
definitionDH949251|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B22, 5' end.DH949252|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,971,802 - 93,972,952)(93,818,492 - 93,818,559)
sequence
gaattcatccccaagtttatcctcttgtgctatataatacctataggaga
cagtttattggggaaaattaaatttaaaggctgtgaaggatccacacgat
gagcaaatgcctctttagtctggaatcaaatagctgtaatttttgcatct
ctagataatataggaggactgtccaatgctgcctttcctttgagagtttg
aaataaagaccatagggcttaaaatcattttgattttgttgaaattacac
tggaaataccaagtgtacctcatgaggcgagggaggaactgctaaattcc
tgcatggtttcctgccatggcctggcttgcctaggttgtaaagttagtgt
tttcataacctctcctcatcaaaaagtggagaaaattccgtattaaattg
atactaaattcaccatcccatgcttcagagtcattttcgggcaatggcag
gtttgtctaaaggagaagccactaacagctgagggagctgtcacccacac
aggtgatagtgtttttacttttgatattgcctgcgcagagaaagcctcct
tcattgcctctcatcacttttaaggcttgatcacccagtttctattcatt
taaagaatttgccacctctttttcgtgattactatcctccctatcttttc
caagaattttaataacagcccaaattaattggcccaattttgacccaaat
tttaacagtgtggcaatttgtatatgcttgctctagggggtggaacatta
ggaggtaaggccttttgggagtaggtctgtcattgtgggcatgggctttt
gtttgtttttgttgtttttttttttcaagaatattcttttttattagata
ttttctttatttacatttttttcttttccttttctttggatatttcttat
ttccttttcaaatgtcatcccctttctcggcttccctcccttccagaaca
ccctagcacatcctccctcccctgctctatgagtgtgtcttcacctccca
atcactccccaccctgattccctacataggacagaccactgctaagcaca
actccagtgagtctgcttgcaggctggaaaggctgagcactcacaaggca
gggaggttccaccgaaactcacctcctgga
taacctggagaatggaaagggttttgtttgtttgtttgttgtatggggtt
gggggatgtattggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93971802_93972952
seq2: B6Ng01-154B22.b_44_1173 (reverse)

seq1  TCCAGGAGGTTGAGTTTC-GTTGACACTCCCTGCCTTGTGAGTGCTTCCA  49
      ||||||||| |||||||| || ||  ||||||||||||||||||||  ||
seq2  TCCAGGAGG-TGAGTTTCGGTGGAACCTCCCTGCCTTGTGAGTGCT--CA  47

seq1  GGCCTCTCAGCCTGCCAAGCAGACTTCACTGGAG-TGTGCTTAGCAGTGG  98
      | | |  ||||||| ||||||||| ||||||||| |||||||||||||||
seq2  GCCTTTCCAGCCTG-CAAGCAGAC-TCACTGGAGTTGTGCTTAGCAGTGG  95

seq1  TCCTTGGTCCTATGTAGGGAAATCAAGGGTGGGGGAGGTGGAATTGGGAG  148
      ||    ||||||||||||| |||| |||||||||   |||  ||||||| 
seq2  TC---TGTCCTATGTAGGG-AATC-AGGGTGGGG--AGTG--ATTGGGA-  135

seq1  GGTGGAGGAACACACTCATAGAAGCAGGGGGAGGGAGGATGTGCTAGGGT  198
      |||| ||  |||||||||||| |||| |||||||||||||||||||||||
seq2  GGTGAAG--ACACACTCATAG-AGCA-GGGGAGGGAGGATGTGCTAGGGT  181

seq1  GTTTCTGGAAGGGAGGGAAGCCGAGAAAGGGGATGACATTTGAAAAGGAA  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTCTGGAAGGGAGGGAAGCCGAGAAAGGGGATGACATTTGAAAAGGAA  230

seq1  ATAAAGAAAATATCCAAAGAAAAGGAAAAAGAAAAAAATGTAAATAAAGA  298
      ||||   |||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAA--GAAATATCCAAAGAAAAGG-AAAAGAAAAAAATGTAAATAAAGA  277

seq1  AAATATCTAATAAAAAAGAATATTCTTGAAAAAAAAAAACAACAAAAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAATAAAAAAGAATATTCTTGAAAAAAAAAAACAACAAAAACA  327

seq1  AACAAAAGCCCATGCCCACAATGACAGACCTACTCCCAAAAGGCCTTACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCCCATGCCCACAATGACAGACCTACTCCCAAAAGGCCTTACC  377

seq1  TCCTAATGTTCCACCCCCTAGAGCAAGCATATACAAATTGCCACACTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGTTCCACCCCCTAGAGCAAGCATATACAAATTGCCACACTGTT  427

seq1  AAAATTTGGGTCAAAATTGGGCCAATTAATTTGGGCTGTTATTAAAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGGGTCAAAATTGGGCCAATTAATTTGGGCTGTTATTAAAATTC  477

seq1  TTGGAAAAGATAGGGAGGATAGTAATCACGAAAAAGAGGTGGCAAATTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGATAGGGAGGATAGTAATCACGAAAAAGAGGTGGCAAATTCT  527

seq1  TTAAATGAATAGAAACTGGGTGATCAAGCCTTAAAAGTGATGAGAGGCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAATAGAAACTGGGTGATCAAGCCTTAAAAGTGATGAGAGGCAA  577

seq1  TGAAGGAGGCTTTCTCTGCGCAGGCAATATCAAAAGTAAAAACACTATCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGGCTTTCTCTGCGCAGGCAATATCAAAAGTAAAAACACTATCA  627

seq1  CCTGTGTGGGTGACAGCTCCCTCAGCTGTTAGTGGCTTCTCCTTTAGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGGGTGACAGCTCCCTCAGCTGTTAGTGGCTTCTCCTTTAGACA  677

seq1  AACCTGCCATTGCCCGAAAATGACTCTGAAGCATGGGATGGTGAATTTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCATTGCCCGAAAATGACTCTGAAGCATGGGATGGTGAATTTAG  727

seq1  TATCAATTTAATACGGAATTTTCTCCACTTTTTGATGAGGAGAGGTTATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTTAATACGGAATTTTCTCCACTTTTTGATGAGGAGAGGTTATG  777

seq1  AAAACACTAACTTTACAACCTAGGCAAGCCAGGCCATGGCAGGAAACCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTAACTTTACAACCTAGGCAAGCCAGGCCATGGCAGGAAACCAT  827

seq1  GCAGGAATTTAGCAGTTCCTCCCTCGCCTCATGAGGTACACTTGGTATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATTTAGCAGTTCCTCCCTCGCCTCATGAGGTACACTTGGTATTT  877

seq1  CCAGTGTAATTTCAACAAAATCAAAATGATTTTAAGCCCTATGGTCTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTAATTTCAACAAAATCAAAATGATTTTAAGCCCTATGGTCTTTA  927

seq1  TTTCAAACTCTCAAAGGAAAGGCAGCATTGGACAGTCCTCCTATATTATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTCTCAAAGGAAAGGCAGCATTGGACAGTCCTCCTATATTATC  977

seq1  TAGAGATGCAAAAATTACAGCTATTTGATTCCAGACTAAAGAGGCATTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGCAAAAATTACAGCTATTTGATTCCAGACTAAAGAGGCATTTG  1027

seq1  CTCATCGTGTGGATCCTTCACAGCCTTTAAATTTAATTTTCCCCAATAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCGTGTGGATCCTTCACAGCCTTTAAATTTAATTTTCCCCAATAAA  1077

seq1  CTGTCTCCTATAGGTATTATATAGCACAAGAGGATAAACTTGGGGATGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTATAGGTATTATATAGCACAAGAGGATAAACTTGGGGATGAA  1127

seq1  TTC  1151
      |||
seq2  TTC  1130

seq1: chr3_93818492_93818559
seq2: B6Ng01-154B22.g_70_137

seq1  TAACCTGGAGAATGGAAAGGGTTTTGTTTGTTTGTTTGTTGTATGGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGAGAATGGAAAGGGTTTTGTTTGTTTGTTTGTTGTATGGGGTT  50

seq1  GGGGGATGTATTGGTTGG  68
      ||||||||||||||||||
seq2  GGGGGATGTATTGGTTGG  68