BAC Information

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BAC

Clone NameB6Ng01-154E05
Chromosome3 (Build37)
Map Location 42,608,212 - 42,746,741
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666031, LOC100039204
Downstream geneLOC100039219, LOC677788, LOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154E05.bB6Ng01-154E05.g
ACCDH949354DH949355
length1,0411,119
definitionDH949354|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E05, 5' end.DH949355|Mus musculus domesticus DNA, BAC clone: B6Ng01-154E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,608,212 - 42,609,256)(42,745,595 - 42,746,741)
sequence
gaattcatatatacatctgatgtgttgtcgtctgaaaagggggttccttg
aagttaccctctattcctgacccttgcaccatttccatctcctcctctct
aaagttcccacaaattttagagaaagctttgaatctctgatgtaggtcct
gccaactcacaggattttgttctcatcacattgaccttttggtgagtctc
tgcattgattgccattcactacaagaagaagtgtctgtgtcagtaagagt
aatatcccaatttacctaaagaatatgtaagctaaataagtaaaatatta
ttttaagctgtgaaggtggtaaaatttaaatttaaaatgttaccataagt
ttaacttactgactgttagggtgtgtgaaacttttaaagttgaaatcccc
taagaggcaatgtagataatttcaagaaagcagttgtaccattttaatat
tctgcagttaatataaaacgtactaaatgtacttctttattgagtaaagg
gatggctatctcccattattttttagcagtctttaaaaactctctactca
caagttgaattcttttaaagctaagggggaaaagtcctaatggtaaagta
agattcccaactctagtgcctgaaaccatgtaacacagtttctaaatggg
aaaagaggaagagagaaaaatgtgatgaacccttaatactctaagctcct
ctaactgagatgtggtagtaattgcttttttttttttttttttttttttt
tttttgtgccaacctcctggaaattgtgaatgctttccagtgaggatcaa
agagaatgacctacatatcaaatagaatggagtatgtagtttctttttct
tctttgtgaaatgctttttggcaccatacttgctaataagaaacaccgcc
aatgctcctcattttttaatgagttgcacttaggtcgggatcagggattt
gggaaccgaaggaaaaaaagtgatttttggtcaaggtgttaatacaaaat
tggatcagattgcccagaccaccttacaccttaatataaat
gaattcatttgactcattttgcacttctgaatttgtattaggttagaaat
agctaactatgatatatatagctcttagacaagagcccacaacatttttt
tagatattacttcctttctaaaattaaaaaaaaagtatttagctattggg
cagaaagcctgaaacatttttcaacaagaaaaacattttttaaactatat
tggaaaacccaaactatacactccattcctgtttctcatccttttttgat
gttctctgaagttgtccttcggagaaaactatggtctaatgacacaagta
ggatgtcaaaacagtgcctcaaacagaaaccaattctcataaccacctaa
ggattggaaagcatgatcctatggacaacatatatcttttcttgcatttt
aaaactgtcttattaatatatatgtataaatacatatgtacatacacaca
tgtgcttacaaatgtgagtatatgcatgatatctgtgtttgagggcgtat
tccacagcatatgcacggaggtcggaagacaacattttggagtttatcct
ctccttctacattttcctgtgttctagagatcagccttagtgtttgcagc
aaagcactctcactgagctatgctgtcagcccagtgaactgcatatttct
agcacagttcctggggccactgcagtagtgagttttttgttaggtgaact
aatcaatgtaaaagggagaaggtggaatacataggcaaatggatggatct
ggatcaggatggatcatcctgagtgtggtaacccaatcacaaaaagcaca
catgatgtgcactcactgataagtggacattatcccagaatcccagaagc
tcagaatacccaagatttaaaaagaataaaaataaaagtggtatgttgcc
gcctgacttcagtgctttcacctcagatgtgtcctgcttggagcctgtaa
aaagcagaatatctcataggagatcaacatgcagctgcctcagagtcaca
ttcagaattgcactgaaagggaaaaaaggaaacaggagggacggattacc
attctgacattctggcttcttttcatagctgcactcataaagcttcaccc
cctggcacttgccaagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_42608212_42609256
seq2: B6Ng01-154E05.b_40_1079

seq1  GAATTCATATATACATCTGATGTGTTGT-GTCTGAAAAGGGGGTTCCTTG  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCATATATACATCTGATGTGTTGTCGTCTGAAAAGGGGGTTCCTTG  50

seq1  AAGTTACCCTCTATTCCTGACCCTTGCACCATTTCCATCTCCTCCTCTCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCCTCTATTCCTGACCCTTGCACCATTTCCATCTCCTCCTCTCT  100

seq1  AAAGTTCCCACAAATTTTAGAGAAAGCTTTGAATCTCTGATGTAGGTCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCCACAAATTTTAGAGAAAGCTTTGAATCTCTGATGTAGGTCCT  150

seq1  GCCAACTCACAGGATTTTGTTCTCATCACATTGACCTTTTGGTGAGTCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCACAGGATTTTGTTCTCATCACATTGACCTTTTGGTGAGTCTC  200

seq1  TGCATTGATTGCCATTCACTACAAGAAGAAGTGTCTGTGTCAGTAAGAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGATTGCCATTCACTACAAGAAGAAGTGTCTGTGTCAGTAAGAGT  250

seq1  AATATCCCAATTTACCTAAAGAATATGTAAGCTAAATAAGTAAAATATTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCAATTTACCTAAAGAATATGTAAGCTAAATAAGTAAAATATTA  300

seq1  TTTTAAGCTGTGAAGGTGGTAAAATTTAAATTTAAAATGTTACCATAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCTGTGAAGGTGGTAAAATTTAAATTTAAAATGTTACCATAAGT  350

seq1  TTAACTTACTGACTGTTAGGGTGTGTGAAACTTTTAAAGTTGAAATCCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTACTGACTGTTAGGGTGTGTGAAACTTTTAAAGTTGAAATCCCC  400

seq1  TAAGAGGCAATGTAGATAATTTCAAGAAAGCAGTTGTACCATTTTAATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCAATGTAGATAATTTCAAGAAAGCAGTTGTACCATTTTAATAT  450

seq1  TCTGCAGTTAATATAAAACGTACTAAATGTACTTCTTTATTGAGTAAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTTAATATAAAACGTACTAAATGTACTTCTTTATTGAGTAAAGG  500

seq1  GATGGCTATCTCCCATTATTTTTTAGCAGTCTTTAAAAACTCTCTACTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTATCTCCCATTATTTTTTAGCAGTCTTTAAAAACTCTCTACTCA  550

seq1  CAAGTTGAATTCTTTTAAAGCTAAGGGGGAAAAGTCCTAATGGAAAAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAGTTGAATTCTTTTAAAGCTAAGGGGGAAAAGTCCTAATGGTAAAGTA  600

seq1  AGATTCCCAACTCTAGTGCCTGAAACCATGTAACACAGTTTCTAAATGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCAACTCTAGTGCCTGAAACCATGTAACACAGTTTCTAAATGGG  650

seq1  AAAAGAGGAAGAGAGAAAAATGTGATGAACCCTTAATACTCTAAGCTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGAAGAGAGAAAAATGTGATGAACCCTTAATACTCTAAGCTCCT  700

seq1  CTAACTGAGATGTGGTAGTAATTGCTTTTTTTTTTTTTTTTTTTTTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGAGATGTGGTAGTAATTGCTTTTTTTTTTTTTTTTTTTTTTTTT  750

seq1  TTTTTGTGCC-ATCTCCTGGAAATGGT-AATGCTTTCAAGTGAGGATCAA  797
      |||||||||| | ||||||||||| || ||||||||| ||||||||||||
seq2  TTTTTGTGCCAACCTCCTGGAAATTGTGAATGCTTTCCAGTGAGGATCAA  800

seq1  AGAGAATGACCTACATACAAAATAGATTGTAGTATGTAGTTACATTTTCA  847
      |||||||||||||||||  ||||||| || ||||||||||| | ||||| 
seq2  AGAGAATGACCTACATATCAAATAGAATGGAGTATGTAGTTTCTTTTTC-  849

seq1  TCCTTTGTAATATGCTTTTTGCAACCATACTT-CTAATAAGAAACACAGC  896
      | |||||| | ||||||||||  ||||||||| |||||||||||||| ||
seq2  TTCTTTGTGAAATGCTTTTTGGCACCATACTTGCTAATAAGAAACACCGC  899

seq1  ATAATGCTCCTCATTTTTTAAAATGAGTTGCCACTAAGGTC-GGATCAGG  945
        |||||||||||||||||  ||||||||| |||| ||||| ||||||||
seq2  -CAATGCTCCTCATTTTTT--AATGAGTTG-CACTTAGGTCGGGATCAGG  945

seq1  TATTTGGGAACCAGAAAGGAAAAAAAAAGTGA-TTTTGTCCAAGGTGTTA  994
       |||||||||||   ||||  ||||||||||| |||||  ||||||||||
seq2  GATTTGGGAACC--GAAGG--AAAAAAAGTGATTTTTGGTCAAGGTGTTA  991

seq1  ATACAAGATATGAATCAGTATGCACAGACCACACTTACACACTTAA-ATA  1043
      |||||| || || |||||  ||| |||||||| ||||||| ||||| |||
seq2  ATACAAAAT-TGGATCAGATTGCCCAGACCAC-CTTACAC-CTTAATATA  1038

seq1  AA  1045
      ||
seq2  AA  1040

seq1: chr3_42745595_42746741
seq2: B6Ng01-154E05.g_63_1181 (reverse)

seq1  GAACTGTGGCAAGATGACCAGTGGGTGAAGCTTTATGAAGTGCAGACTAT  50
      ||||| ||||||| || |||| ||||||||||||||| ||||||| ||||
seq2  GAACT-TGGCAAG-TG-CCAGGGGGTGAAGCTTTATG-AGTGCAG-CTAT  45

seq1  GAGAAAGAAGCCAGACAATTGTCAGGGATGTGTAAATACGGTCCCCTTCC  100
      || |||||||||||   | ||||| | ||| ||||   | |||||  |||
seq2  GA-AAAGAAGCCAG---AATGTCA-GAATG-GTAA--TCCGTCCC--TCC  85

seq1  TGTTTCCTTTTTTTCCCTTTCAGTGCCATATCCTGAATGTGACTCCTGAG  150
      ||||||| ||||||||||||||||||   || |||||||||||| |||||
seq2  TGTTTCC-TTTTTTCCCTTTCAGTGC--AATTCTGAATGTGACT-CTGAG  131

seq1  GCAGCTGCATGTTGATCTCCTATGAGATATTCTGCCTTTTTACAGGCTCC  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGCTGCATGTTGATCTCCTATGAGATATTCTG-CTTTTTACAGGCTCC  180

seq1  AAGGCAGGACACATTCCTGAGGTGAAAGCACTGAAGTCAGGCGGCAACAT  250
      || |||||||||||  ||||||||||||||||||||||||||||||||||
seq2  AA-GCAGGACACAT--CTGAGGTGAAAGCACTGAAGTCAGGCGGCAACAT  227

seq1  ACCACCTTTTATTTTTTTATTCTTTTTTAAATCTTGGGTATTCTGAGCTT  300
      |||| ||||||  ||||||||| |||||||||||||||||||||||||||
seq2  ACCA-CTTTTA--TTTTTATTC-TTTTTAAATCTTGGGTATTCTGAGCTT  273

seq1  CTGGGATTCTGGGATAATGTCCACTTATCAGTGAGTGCACATCATGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTCTGGGATAATGTCCACTTATCAGTGAGTGCACATCATGTGTG  323

seq1  CTTTTTTGTGATTGGGTTACCACACTCAGGATGATCCATCCTGATCCAGA  400
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTTTTGTGATTGGGTTACCACACTCAGGATGATCCATCCTGATCCAGA  372

seq1  TCCATCCATTTGCCTATGTATTCCACCTTCTCCCTTTTACATTGATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATTTGCCTATGTATTCCACCTTCTCCCTTTTACATTGATTAGT  422

seq1  TCACCTAACAAAAAACTCACTACTGCAGTGGCCCCAGGAACTGTGCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAACAAAAAACTCACTACTGCAGTGGCCCCAGGAACTGTGCTAGA  472

seq1  AATATGCAGTTCACTGGGCTGACAGCATAGCTCAGTGAGAGTGCTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAGTTCACTGGGCTGACAGCATAGCTCAGTGAGAGTGCTTTGCT  522

seq1  GCAAACACTAAGGCTGATCTCTAGAACACAGGAAAATGTAGAAGGAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACTAAGGCTGATCTCTAGAACACAGGAAAATGTAGAAGGAGAGG  572

seq1  ATAAACTCCAAAATGTTGTCTTCCGACCTCCGTGCATATGCTGTGGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCCAAAATGTTGTCTTCCGACCTCCGTGCATATGCTGTGGAATA  622

seq1  CGCCCTCAAACACAGATATCATGCATATACTCACATTTGTAAGCACATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCAAACACAGATATCATGCATATACTCACATTTGTAAGCACATGT  672

seq1  GTGTATGTACATATGTATTTATACATATATATTAATAAGACAGTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTACATATGTATTTATACATATATATTAATAAGACAGTTTTAAA  722

seq1  ATGCAAGAAAAGATATATGTTGTCCATAGGATCATGCTTTCCAATCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGAAAAGATATATGTTGTCCATAGGATCATGCTTTCCAATCCTTA  772

seq1  GGTGGTTATGAGAATTGGTTTCTGTTTGAGGCACTGTTTTGACATCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTATGAGAATTGGTTTCTGTTTGAGGCACTGTTTTGACATCCTAC  822

seq1  TTGTGTCATTAGACCATAGTTTTCTCCGAAGGACAACTTCAGAGAACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCATTAGACCATAGTTTTCTCCGAAGGACAACTTCAGAGAACATC  872

seq1  AAAAAAGGATGAGAAACAGGAATGGAGTGTATAGTTTGGGTTTTCCAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGATGAGAAACAGGAATGGAGTGTATAGTTTGGGTTTTCCAATA  922

seq1  TAGTTTAAAAAATGTTTTTCTTGTTGAAAAATGTTTCAGGCTTTCTGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAAAAAATGTTTTTCTTGTTGAAAAATGTTTCAGGCTTTCTGCCC  972

seq1  AATAGCTAAATACTTTTTTTTTAATTTTAGAAAGGAAGTAATATCTAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTAAATACTTTTTTTTTAATTTTAGAAAGGAAGTAATATCTAAAA  1022

seq1  AAATGTTGTGGGCTCTTGTCTAAGAGCTATATATATCATAGTTAGCTATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTGGGCTCTTGTCTAAGAGCTATATATATCATAGTTAGCTATT  1072

seq1  TCTAACCTAATACAAATTCAGAAGTGCAAAATGAGTCAAATGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTAATACAAATTCAGAAGTGCAAAATGAGTCAAATGAATTC  1119