BAC Information

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BAC

Clone NameB6Ng01-155I04
Chromosome3 (Build37)15 (Build37)
Map Location 4,501,363 - 4,501,47123,445,007 - 23,446,057
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155I04.bB6Ng01-155I04.g
ACCDH950273DH950274
length3731,048
definitionDH950273|Mus musculus domesticus DNA, BAC clone: B6Ng01-155I04, 5' end.DH950274|Mus musculus domesticus DNA, BAC clone: B6Ng01-155I04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,501,363 - 4,501,471)(23,445,007 - 23,446,057)
sequence
acttccagtctggagatttgaggtaggatggcacagaaagttctttgatc
tagatcttgctacattaatctgtgcttcaccttctgatgaaagtcttcac
aaggacactaaaagaaaagcttttgttcttttcctgcttgctctcatcct
gttaggatatccattctttcactgggattggaatgtatatcttcaggatt
ccaacaaatactgaagaccaacgagtcagccagccttgtggattgagcaa
ctactgtattcttggacattcttttcagagcgagccatcattggattagc
tggactgcagctataagtcactccaataaatccagtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtg
gaattcaaagttcgagggtcattgataaacaccaaaaatattaaaactca
agaaaaatggactcaacttagtcttacctttgacattcatatacaaacac
cttggtgcatgcatatgcatagagtaatgaaacactacaatacacacaca
cacacacacacacacacacacacacacacacacactcatacggaggagat
gtattttaaataaagcaatgttaatcaaaaagcagtgtggatattcagtt
gtgaaatgattaacacagatatttttatttattttttattggatatttta
tttatttacatttcaaatgttagcctctttcctgacccaccccaaaactc
tttatactatcctccatcctcctgcttctatgagggtgtacctccaccta
gccaaccactcccacctccctgtcctggcattcccctacactgttgcatc
catcgagccttcacaggaccaagggcctcttctcccactgatgccagaca
aggccatcctctgctacatatatggttgaagtcctggatccctccacgtc
tactctttggttggtggtttaaaccctgggagctctggttggttgatgtt
gttgttcttcctttggggttccaaaccccttcggctccttcagtcctttc
tctaactcctccattggggaccctgtgatcagttcaatcattggctgcca
gcatccatctctgtatttgtcaggttttggcagagcctctcagtagacaa
ctatatcaggctcctgtcagcacgcacttcttggcatctacactagtgtc
tccatttggtgactgtttataggatggatccccaaatgggacagtgtctg
gatgtcttttccttcagtctctgctccacactttgtctccatatttgctc
ctgtgagtgttttgttatcccttctaagaaggaccaaaggacccacactt
tggtcttccttcttgagcttcatgttgtcacacagatattttttatgaat
aagatactatgttattactttaaaattgttttacattatgagtattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_4501363_4501471
seq2: B6Ng01-155I04.b_379_425 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACTCTCT  50
            ||||||||||||||||||||||||||||||||||||||||   |
seq2  ------CACACACACACACACACACACACACACACACACACACACTGGAT  44

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGGCACACACA  100
       |                                                
seq2  TTA-----------------------------------------------  47

seq1  CTGGATTTA  109
               
seq2  ---------  47

seq1: chr15_23445007_23446057
seq2: B6Ng01-155I04.g_68_1115

seq1  GAATTCAAAGTTCGAGGGTCATTGATAAACACCAAAAATATTAAAACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTCGAGGGTCATTGATAAACACCAAAAATATTAAAACTCA  50

seq1  AGAAAAATGGACTCAACTTAGTCTTACCTTTGACATTCATATACAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGGACTCAACTTAGTCTTACCTTTGACATTCATATACAAACAC  100

seq1  CTTGGTGCATGCATATGCATAGAGTAATGAAACACTACAATACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGCATGCATATGCATAGAGTAATGAAACACTACAATACACACACA  150

seq1  CACACACACACACACACACACACACACACACACACTCATACGGAGGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACTCATACGGAGGAGAT  200

seq1  GTATTTTAAATAAAGCAATGTTAATCAAAAAGCAGTGTGGATATTCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAAATAAAGCAATGTTAATCAAAAAGCAGTGTGGATATTCAGTT  250

seq1  GTGAAATGATTAACACAGATATTTTTATTTATTTTTTATTGGATATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGATTAACACAGATATTTTTATTTATTTTTTATTGGATATTTTA  300

seq1  TTTATTTACATTTCAAATGTTAGCCTCTTTCCTGACCCACCCCAAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACATTTCAAATGTTAGCCTCTTTCCTGACCCACCCCAAAACTC  350

seq1  TTTATACTATCCTCCATCCTCCTGCTTCTATGAGGGTGTACCTCCACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTATCCTCCATCCTCCTGCTTCTATGAGGGTGTACCTCCACCTA  400

seq1  GCCAACCACTCCCACCTCCCTGTCCTGGCATTCCCCTACACTGTTGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCACTCCCACCTCCCTGTCCTGGCATTCCCCTACACTGTTGCATC  450

seq1  CATCGAGCCTTCACAGGACCAAGGGCCTCTTCTCCCACTGATGCCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAGCCTTCACAGGACCAAGGGCCTCTTCTCCCACTGATGCCAGACA  500

seq1  AGGCCATCCTCTGCTACATATATGGTTGAAGTCCTGGATCCCTCCACGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCCTCTGCTACATATATGGTTGAAGTCCTGGATCCCTCCACGTC  550

seq1  TACTCTTTGGTTGGTGGTTTAAACCCTGGGAGCTCTGGTTGGTTGATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTGGTTGGTGGTTTAAACCCTGGGAGCTCTGGTTGGTTGATGTT  600

seq1  GTTGTTCTTCCTTTGGGGTTCCAAACCCCTTCGGCTCCTTCAGTCCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTTCCTTTGGGGTTCCAAACCCCTTCGGCTCCTTCAGTCCTTTC  650

seq1  TCTAACTCCTCCATTGGGGACCCTGTGATCAGTTCAATCATTGGCTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCCTCCATTGGGGACCCTGTGATCAGTTCAATCATTGGCTGCCA  700

seq1  GCATCCATCTCTGTATTTGTCAGGTTTTGGCAGAGCCTCTCAGTAGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATCTCTGTATTTGTCAGGTTTTGGCAGAGCCTCTCAGTAGACAA  750

seq1  CTATATCAGGCTCCTGTCAGCACGCACTTCTTGGCATCTACACTAGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAGGCTCCTGTCAGCACGCACTTCTTGGCATCTACACTAGTGTC  800

seq1  TCCATTTGGTGACTGTTTATAGGATGGATCCCCAAATGGGACAGTGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGGTGACTGTTTATAGGATGGATCCCCAAATGGGACAGTGTCTG  850

seq1  GATGTCCTTTCCTTCAGTCTCTGCTCCACACTTTGTCTCCATATTTGCTC  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTTTCCTTCAGTCTCTGCTCCACACTTTGTCTCCATATTTGCTC  900

seq1  CTGTGAGTGTTTTGTTATCCCTTCTAAGAAGGACCAAAGGACCCACACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTGTTTTGTTATCCCTTCTAAGAAGGACCAAAGGACCCACACTT  950

seq1  TGGTCTTCCTTCTTGAGCTTCATGTGGTCAACACAGATATTTTTTAATGA  1000
      ||||||||||||||||||||||||| ||| ||||||||||||||| ||| 
seq2  TGGTCTTCCTTCTTGAGCTTCATGTTGTC-ACACAGATATTTTTT-ATG-  997

seq1  AATAAGATACTATGTTATTACTTTAAAAATGTTTTACATTATGAGTATTA  1050
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATAAGATACTATGTTATTACTTTAAAATTGTTTTACATTATGAGTATTA  1047

seq1  T  1051
      |
seq2  T  1048