BAC Information

Click to search

BAC

Clone NameB6Ng01-156B07
Chromosome3 (Build37)
Map Location 3,646,947 - 3,784,150
singlet/doubletdoublet
Overlap geneHnf4g
Upstream geneLOC667655, LOC100039140
Downstream geneEG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B07.bB6Ng01-156B07.g
ACCDH950681DH950682
length1,039989
definitionDH950681|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B07, 5' end.DH950682|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,646,947 - 3,648,006)(3,783,154 - 3,784,150)
sequence
gaattcttgagtatatgaacactgtgctcagaggttgtcaggcaggtggt
gaacagtgagtgctgtaagataaagcagggacagagcaggcagaaggtaa
aaaaaataatgtctactcacctaatgtcacatgtaagatcacagtagagg
aatctggactttattttaaggacaatttgaaagcattgaagtttttagca
gagatgtggtatgtacatatgagtggtttaataaaagatgctccaggact
gtagaagtgattgagaagcaagcatagcaagtgggtgtgctagagtagtt
cagtgacagggtggaagtcacagagaagaaaggcaatgggtggaaatggt
ttacactttaataaccatcaacagatccttgagaagttaaagaatactcc
acatagacttctgttggatccaaacaatcatatttggatgctggtagcat
gtactattgagcagaaaacataggagaagcattcatttgggaagtgctac
acttgtcttggtttctctggttgtaaccagtacagaacggagggaaagaa
tgaatatttactgctgcaaggtcagacacaatctagacacaagtaggagc
tgatcactttttctttcccccctagaagtgtagggtttgctttgtttgct
taatttattttttgcaggaaattttgtttatgcaaattttgtaatctcat
tcccaggactacatctggtgtttcacttttcatatgaaagcagatgaaat
ccaaacctactagtatatatgcaaggttaaataggggatcgagggagcag
gcatcgcactaaagtgtaacctcaaactgctccattctgctttcctcaga
aaccaaagatctgctttttttggctatccccaaaagcaaatacttctgat
gtgctacagtagaaacttggacagcctaaccattttacgtgtgcatatta
tttatttcagacaaacaacttaaaggagtcagctagaacgttgtagtatc
agactactgtactgtcttatgtacgtttatatgactgta

gaattcaaggtcttccttcctcagtttctccttttagtttttaagaaaaa
tctgaaaacatcttggtccatcctctttatttctatattaaatagatgaa
taataaatgaagttatctgtctaattgtatgttgatactctctcctaaaa
tctgttccatttttacaatttttgaacacttaattttgactaaagactgt
agtgagacaaaaatatctttgtttaacatacacatctcttcaaaatctga
gagttattttgtgttctgttgattttgactctcatgatggccaaggacac
aggctacatggagacttcatagaaaaccaccaggaaactactctcttgag
ctctcctcaatccaagatccactatacagacagactttgttgattcagtc
cagaggcatatgcctatgtggaaaaagatcaaagagtgtctgcaccacgc
acctctctcttttttttttaatttttaattttttattttttattagatat
tttctttatttacaccatgtacctctcttatcttcaatatactacccctt
tcactttaaatatttgccttacctgaacatgctctgtggaattttattta
ttttccaaatactccaagaaaagaactatttccagaggtatccaaccacc
atcacctggtagtttccaattcaggctttagttcagataaaaaggcaaga
caaaggattgtttatttcctataacattttgcaaaagtaacttggtttct
tcagagtgtatctaattaacacacacacatacacacacacacacacacac
acacacacacacacacacacacacatatatatatatatatatatatagag
agagagagagagacagagagagacagagacagagacagagtgacgagaaa
cagagagacagagacgagagaacagagagagacgagacgagacgattcga
gacagagagacagaaagaaggaggagggagggaggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_3646947_3648006
seq2: B6Ng01-156B07.b_48_1083

seq1  GAATTCTTGAGTATATGAACACTGTGCTCAGAGGTTGTCAGGCAGGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGTATATGAACACTGTGCTCAGAGGTTGTCAGGCAGGTGGT  50

seq1  GAACAGTGAGTGCTGTAAGATAAAGCAGGGACAGAGCAGGCAGAAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGAGTGCTGTAAGATAAAGCAGGGACAGAGCAGGCAGAAGGTAA  100

seq1  AAAAAATAATGTCTACTCACCTAATGTCACATGTAAGATCACAGTAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATGTCTACTCACCTAATGTCACATGTAAGATCACAGTAGAGG  150

seq1  AATCTGGACTTTATTTTAAGGACAATTTGAAAGCATTGAAGTTTTTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGACTTTATTTTAAGGACAATTTGAAAGCATTGAAGTTTTTAGCA  200

seq1  GAGATGTGGTATGTACATATGAGTGGTTTAATAAAAGATGCTCCAGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGGTATGTACATATGAGTGGTTTAATAAAAGATGCTCCAGGACT  250

seq1  GTAGAAGTGATTGAGAAGCAAGCATAGCAAGTGGGTGTGCTAGAGTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGTGATTGAGAAGCAAGCATAGCAAGTGGGTGTGCTAGAGTAGTT  300

seq1  CAGTGACAGGGTGGAAGTCACAGAGAAGAAAGGCAATGGGTGGAAATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACAGGGTGGAAGTCACAGAGAAGAAAGGCAATGGGTGGAAATGGT  350

seq1  TTACACTTTAATAACCATCAACAGATCCTTGAGAAGTTAAAGAATACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTAATAACCATCAACAGATCCTTGAGAAGTTAAAGAATACTCC  400

seq1  ACATAGACTTCTGTTGGATCCAAACAATCATATTTGGATGCTGGTAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACTTCTGTTGGATCCAAACAATCATATTTGGATGCTGGTAGCAT  450

seq1  GTACTATTGAGCAGAAAACATAGGAGAAGCATTCATTTGGGAAGTGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATTGAGCAGAAAACATAGGAGAAGCATTCATTTGGGAAGTGCTAC  500

seq1  ACTTGTCTTGGTTTCTCTGGTTGTAACCAGTACAGAACGGAGGGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTTGGTTTCTCTGGTTGTAACCAGTACAGAACGGAGGGAAAGAA  550

seq1  TGAATATTTACTGCTGCAAGGTCAGACACAATCTAGACACAAGTAGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTACTGCTGCAAGGTCAGACACAATCTAGACACAAGTAGGAGC  600

seq1  TGATCACTTTTTCTTTCCCCCCTAGAAGTGTAGGGTTTGCTTTGTTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACTTTTTCTTTCCCCCCTAGAAGTGTAGGGTTTGCTTTGTTTGCT  650

seq1  TAATTTATTTTTTGCAGGAAATTTTGTTTATGCAAATTTTGTAATCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATTTTTTGCAGGAAATTTTGTTTATGCAAATTTTGTAATCTCAT  700

seq1  TCCCAGGACTACATCTGGTGTTTCACTTTTCATATGAAAGCAGATGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGACTACATCTGGTGTTTCACTTTTCATATGAAAGCAGATGAAAT  750

seq1  CCAAACCTACTAGTATATATGCAAGGTTAAATAGGGGATCGAGGGAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTACTAGTATATATGCAAGGTTAAATAGGGGATCGAGGGAGCAG  800

seq1  GCATCGCACTAAAGTGTAACCTCAAACTGCTCCATTCTGCTTTCCTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGCACTAAAGTGTAACCTCAAACTGCTCCATTCTGCTTTCCTCAGA  850

seq1  AACCAAAGATCTGCTTTTTTTGGCTATCCCCAAAAGCAAATACTTCTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGATCTGCTTTTTTTGGCTATCCCCAAAAGCAAATACTTCTGAT  900

seq1  GTGCTACAGTAGAAACTTGGACAGCCTAACCATTTTACGTGTGCATAATT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGCTACAGTAGAAACTTGGACAGCCTAACCATTTTACGTGTGCAT-ATT  949

seq1  ATTTTATTTCAGAACAAAACAAAACTTAAAGGGAGTCAGGCTTAAGAAAC  1000
      | |||||||||| ||||   | |||||||| ||||||| |||  || |||
seq2  A-TTTATTTCAG-ACAA---ACAACTTAAA-GGAGTCA-GCT--AG-AAC  989

seq1  GTTGTAAGTTAATCAGACTTACCTTGTACTGTCTTTTAATTGTTACGTTT  1050
      ||||| |||  ||||||| |||  ||||||||||| |      |||| ||
seq2  GTTGT-AGT--ATCAGAC-TAC--TGTACTGTCTTAT-----GTACG-TT  1027

seq1  TATAATGACT  1060
      ||| ||||||
seq2  TAT-ATGACT  1036


seq1: chr3_3783154_3784150
seq2: B6Ng01-156B07.g_68_1056 (reverse)

seq1  TCCCCCTCCCTCCCTCCCTCCTTCTTTCTGTCTCTCTGTCTCGTATCTGT  50
      ||||||||||||||| ||||||||||||||||||||||||||| ||| ||
seq2  TCCCCCTCCCTCCCT-CCTCCTTCTTTCTGTCTCTCTGTCTCGAATC-GT  48

seq1  CTCTGTCTTCTGTCTCTCTCTGTTTCTCTCTGTCTCTGTCTCTCTGTTTC  100
      ||| ||||   ||||||||||| ||||||| |||||||||||||||||||
seq2  CTC-GTCT--CGTCTCTCTCTG-TTCTCTC-GTCTCTGTCTCTCTGTTTC  93

seq1  TCTGTCACTCTGTCTCTGTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTC  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-GTCACTCTGTCTCTGTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTC  142

seq1  TATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTG  192

seq1  TGTGTGTGTGTGTGTGTATGTGTGTGTGTTAATTAGATACACTCTGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTATGTGTGTGTGTTAATTAGATACACTCTGAAGA  242

seq1  AACCAAGTTACTTTTGCAAAATGTTATAGGAAATAAACAATCCTTTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTTACTTTTGCAAAATGTTATAGGAAATAAACAATCCTTTGTCT  292

seq1  TGCCTTTTTATCTGAACTAAAGCCTGAATTGGAAACTACCAGGTGATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTTATCTGAACTAAAGCCTGAATTGGAAACTACCAGGTGATGGT  342

seq1  GGTTGGATACCTCTGGAAATAGTTCTTTTCTTGGAGTATTTGGAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGATACCTCTGGAAATAGTTCTTTTCTTGGAGTATTTGGAAAATAA  392

seq1  ATAAAATTCCACAGAGCATGTTCAGGTAAGGCAAATATTTAAAGTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCCACAGAGCATGTTCAGGTAAGGCAAATATTTAAAGTGAAAG  442

seq1  GGGTAGTATATTGAAGATAAGAGAGGTACATGGTGTAAATAAAGAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTATATTGAAGATAAGAGAGGTACATGGTGTAAATAAAGAAAATA  492

seq1  TCTAATAAAAAATAAAAAATTAAAAATTAAAAAAAAAAGAGAGAGGTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAAAAATAAAAAATTAAAAATTAAAAAAAAAAGAGAGAGGTGCG  542

seq1  TGGTGCAGACACTCTTTGATCTTTTTCCACATAGGCATATGCCTCTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAGACACTCTTTGATCTTTTTCCACATAGGCATATGCCTCTGGAC  592

seq1  TGAATCAACAAAGTCTGTCTGTATAGTGGATCTTGGATTGAGGAGAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAACAAAGTCTGTCTGTATAGTGGATCTTGGATTGAGGAGAGCTC  642

seq1  AAGAGAGTAGTTTCCTGGTGGTTTTCTATGAAGTCTCCATGTAGCCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTAGTTTCCTGGTGGTTTTCTATGAAGTCTCCATGTAGCCTGTG  692

seq1  TCCTTGGCCATCATGAGAGTCAAAATCAACAGAACACAAAATAACTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCCATCATGAGAGTCAAAATCAACAGAACACAAAATAACTCTCA  742

seq1  GATTTTGAAGAGATGTGTATGTTAAACAAAGATATTTTTGTCTCACTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAAGAGATGTGTATGTTAAACAAAGATATTTTTGTCTCACTACA  792

seq1  GTCTTTAGTCAAAATTAAGTGTTCAAAAATTGTAAAAATGGAACAGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAGTCAAAATTAAGTGTTCAAAAATTGTAAAAATGGAACAGATTT  842

seq1  TAGGAGAGAGTATCAACATACAATTAGACAGATAACTTCATTTATTATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGAGTATCAACATACAATTAGACAGATAACTTCATTTATTATTC  892

seq1  ATCTATTTAATATAGAAATAAAGAGGATGGACCAAGATGTTTTCAGATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTAATATAGAAATAAAGAGGATGGACCAAGATGTTTTCAGATTT  942

seq1  TTCTTAAAAACTAAAAGGAGAAACTGAGGAAGGAAGACCTTGAATTC  997
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAAACTAAAAGGAGAAACTGAGGAAGGAAGACCTTGAATTC  989


| Home | SequenceCutter | Blast | Download |