BAC Information

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BAC

Clone NameB6Ng01-156B08
Chromosome3 (Build37)
Map Location 158,688,115 - 158,689,229
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc40, Lrrc7, LOC100041008, LOC668905
Downstream geneLOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B08.g
ACCDH950683
length1,105
definitionDH950683|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacatatagtagttacaaaattgaagaaagactggagatttagga
acaggtaagcattatttgagagttagttgtgctgaattacccctaaacaa
aatggctttcgatgcatggagatgtgaatgtatatcagttatatacctga
agtataataagccatgaaaagaactaaactcactgtattaccatccacaa
taaaaatatgtgatgattcttcagttagaataaaaatttgttttaatttg
tataagccttgtaatagaggtgaaatagacattcatagagtttctgaatt
tggaatcatgttgatgaaaacctataaatttgagatatatctagtgaaga
agggtgcaaaacaccttgtttattatgagttagagggaaattgcttggga
aagcatgcaattcaatgccctagttttttttacagcaaacctaggaaaat
gtcatacggtgatgtcaggaaaattgccaattgccagtctcctacaaaag
aaaactatggaggtttggagtgcactgggatgtgaagacttgaaagcact
tggatcttctgtagaaatgccaggctctgctgacctccctccttgtccac
gtcaatcagacacagttttgtcaaagctgctctaatttagtctctaacta
atcatgacttttgctaagatattgtcatagtgatagtgctggaaaataaa
ataacaactacagttttagagattttttctttcaatctttttgtttttaa
atgcataagatcaaaacaaattacttcagtacatttatccattttcatag
tgccttatttacagcttttgctttgatgaaacgacataataaaatcaaag
ttgaaaggtgaagtgtgtatttggcttatgctgcacacttcctgttcatc
actcaaggaagtcaggacaagagtcaagcaaggcagaacctggagacaga
tctgatgcagaggtcatggagaaatgtccttaattgcttgcttgtcatac
ttgatcacctgctttcttagagattatgttcaccagcactacggtgggct
gggcctttcctgtcattcataaattaaggaaaaggccaactcagaattta
tgcag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158688115_158689229
seq2: B6Ng01-156B08.g_68_1172 (reverse)

seq1  CTGCATAAAATCTGATGTTGGGCTTTTTCTTAATTTATGATTGACAGGGA  50
      ||||||||| ||||| ||||| ||||| |||||||||||| ||||| |||
seq2  CTGCATAAATTCTGA-GTTGGCCTTTTCCTTAATTTATGAATGACA-GGA  48

seq1  AGGGCCCAGCCCACTGTAGTGCTGGTGAACATAAATTCTCTAAGAAAGCA  100
      | |||||||||||| |||||||||||||||||||  ||||||||||||||
seq2  AAGGCCCAGCCCACCGTAGTGCTGGTGAACATAA--TCTCTAAGAAAGCA  96

seq1  GGTTGATCAAGTTATGACAAGCAAGCAATTAAGGAACATTTCTCCATGAC  150
      || |||||||| |||||||||||||||||||||| |||||||||||||||
seq2  GG-TGATCAAG-TATGACAAGCAAGCAATTAAGG-ACATTTCTCCATGAC  143

seq1  CTCTGCATCAGATCTGTCTTCCAGGTTCCTGCCTTGCTTGAACTCTTGTC  200
      |||||||||||||||||| |||||||| |||||||||||| |||||||||
seq2  CTCTGCATCAGATCTGTC-TCCAGGTT-CTGCCTTGCTTG-ACTCTTGTC  190

seq1  CTGACTTCCTTGAGTGATGAACAGGAAGTGTGCAGCATAAGCCAAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCCTTGAGTGATGAACAGGAAGTGTGCAGCATAAGCCAAATACA  240

seq1  CACTTCACCTTTCAACTTTGATTTTATTATGTCGTTTCATCAAAGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACCTTTCAACTTTGATTTTATTATGTCGTTTCATCAAAGCAAAA  290

seq1  GCTGTAAATAAGGCACTATGAAAATGGATAAATGTACTGAAGTAATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAATAAGGCACTATGAAAATGGATAAATGTACTGAAGTAATTTGT  340

seq1  TTTGATCTTATGCATTTAAAAACAAAAAGATTGAAAGAAAAAATCTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTTATGCATTTAAAAACAAAAAGATTGAAAGAAAAAATCTCTAA  390

seq1  AACTGTAGTTGTTATTTTATTTTCCAGCACTATCACTATGACAATATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGTTGTTATTTTATTTTCCAGCACTATCACTATGACAATATCTT  440

seq1  AGCAAAAGTCATGATTAGTTAGAGACTAAATTAGAGCAGCTTTGACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGTCATGATTAGTTAGAGACTAAATTAGAGCAGCTTTGACAAAA  490

seq1  CTGTGTCTGATTGACGTGGACAAGGAGGGAGGTCAGCAGAGCCTGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGATTGACGTGGACAAGGAGGGAGGTCAGCAGAGCCTGGCATT  540

seq1  TCTACAGAAGATCCAAGTGCTTTCAAGTCTTCACATCCCAGTGCACTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAAGATCCAAGTGCTTTCAAGTCTTCACATCCCAGTGCACTCCA  590

seq1  AACCTCCATAGTTTTCTTTTGTAGGAGACTGGCAATTGGCAATTTTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCATAGTTTTCTTTTGTAGGAGACTGGCAATTGGCAATTTTCCTG  640

seq1  ACATCACCGTATGACATTTTCCTAGGTTTGCTGTAAAAAAAACTAGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCGTATGACATTTTCCTAGGTTTGCTGTAAAAAAAACTAGGGCA  690

seq1  TTGAATTGCATGCTTTCCCAAGCAATTTCCCTCTAACTCATAATAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGCATGCTTTCCCAAGCAATTTCCCTCTAACTCATAATAAACAA  740

seq1  GGTGTTTTGCACCCTTCTTCACTAGATATATCTCAAATTTATAGGTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTGCACCCTTCTTCACTAGATATATCTCAAATTTATAGGTTTTC  790

seq1  ATCAACATGATTCCAAATTCAGAAACTCTATGAATGTCTATTTCACCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACATGATTCCAAATTCAGAAACTCTATGAATGTCTATTTCACCTCT  840

seq1  ATTACAAGGCTTATACAAATTAAAACAAATTTTTATTCTAACTGAAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGGCTTATACAAATTAAAACAAATTTTTATTCTAACTGAAGAAT  890

seq1  CATCACATATTTTTATTGTGGATGGTAATACAGTGAGTTTAGTTCTTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATATTTTTATTGTGGATGGTAATACAGTGAGTTTAGTTCTTTTC  940

seq1  ATGGCTTATTATACTTCAGGTATATAACTGATATACATTCACATCTCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTATTATACTTCAGGTATATAACTGATATACATTCACATCTCCAT  990

seq1  GCATCGAAAGCCATTTTGTTTAGGGGTAATTCAGCACAACTAACTCTCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAAAGCCATTTTGTTTAGGGGTAATTCAGCACAACTAACTCTCAA  1040

seq1  ATAATGCTTACCTGTTCCTAAATCTCCAGTCTTTCTTCAATTTTGTAACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTTACCTGTTCCTAAATCTCCAGTCTTTCTTCAATTTTGTAACT  1090

seq1  ACTATATGTGAATTC  1115
      |||||||||||||||
seq2  ACTATATGTGAATTC  1105