BAC Information

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BAC

Clone NameB6Ng01-156D12
Chromosome3 (Build37)
Map Location 38,834,793 - 38,949,301
singlet/doubletdoublet
Overlap geneFat4
Upstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156D12.bB6Ng01-156D12.g
ACCDH950782DH950783
length1,2241,104
definitionDH950782|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D12, 5' end.DH950783|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,948,056 - 38,949,301)(38,834,793 - 38,835,911)
sequence
gaattctccccactgcctatggtaatccctgtgaaaactatacagaggga
atcagattgcctcactcctacagcttaaaccctcaaaatctgcaataaac
cagaggttatcatggcctcttagttggcaagctacctttctaatctcatc
taaagtcagtatgtcaggccctcttagctgtgccaatgtgtggttttatc
atcatttgggggcggggacttggctccttatgtttctaagttgaaagatc
tgccaggttttgagtggaagtggcttgggtcagcagttaggcatagcccc
cctcagcagggctgagaatacatctcagtggcagagaacacactttacgt
gtgctaagctagtctgggctcaatttagctcctcaaaaaagcaaaaatta
aaaacaatgaaatagcagcaggaacaatggaaaatggacggtttagaaca
tgtagagtaaaataagatacagaaaaataaaataaatgatttaaaccata
caaagatgaaagaattagagacagcataggcaacaacaaaaattaaggga
gaggagacccagaataaaatataaagaaagcagatgaggagaacaagaaa
cataaaattatgataaagggagaaaagagagagaaatctcgattagacaa
gcaaaagagggagacttgtaagagaaaattggaaatccatgaagacaaaa
atcgagaaagtcagtttagggtatattgcaggcctttgtgtgaatttcga
aatgatagcatgtgtataatacgtcatgcaagaatgtcttcacactcctg
gaacatggaaaaaagacttagatagagtgtggattgatcaccttgagaga
acatgtgatacagcagatgcaacatttcaagtggtgggtctatgaagaaa
taaagaggggttttcaaagtgggctacagaaagggggacagtgtgtctgc
cacatataaacagggctgatgggaagattttaaaagagcacttgtaacag
aagagcatccagtacagagcagaacactgggatggagatggtttaagagc
atgggtaactgtgcctgcatgctagatgtcatgaacgtgctgactttcag
catcatcatgagaaaagtcggtttatgaagaactgcagaatatggccctt
taatttttgctccgcgcacgtatctagatatcatacacactggaagttct
gaatcgagatcattattttccaat
gaattccttgtgagaagaccttttcatctttatgagaaggcctttagcga
ctgagccacttacccaatcacccaggcttttcttttagctagtcagttaa
agatgagtcttgctctctcgcttaggctaagattgactttctggacagcc
acttgcctaggcctcccaaatgtaggacttatggttctgaacagccacac
ctggctttcttttcattctaaagtggggaaagagatggcctctagctaga
tagggagctcagcatttatgagcactcattgctcttacagaggacctgga
ttaagtttctaacagccacataacagcttctaactgtttgtaactcctgt
accaggggatccaacacccttttctggcttccttgagcaccaggcatgca
cagaatgcacatacagatttcagttttcactagtgtgatgttagctgagg
cagaacataattttcagccccccctggctttcctgacacctcacacacag
ctcctgccagactctaatggtatgtgatgtgaagtctttcctccaaagtc
taatttccatgacaaggattcccagttcttagttctagaccatcttcaag
atgagacatacactcttagaaccacaggctgtggaattgggtcggttcta
tgtgataaataaataaatgcctgagcatattgctcataggctgatcatga
ccctgtgtgcctccatagtccaaacgctgtggtcctgacatttgggcatt
taaatgtaagctgttccttgttaagaccttctcataactaaaatgtgagt
cactcccaaactgtaatggaagttggctctgcagcatgataaaccaactg
ctcagaacacagggtaagctttgcccagacttcatgacaacagaattccc
agtggtcgccccaaatagggaaaggcccgaggaacaaactgaaagcagtc
gggtgatcctggcaccatctttacagcagcatcgttttccttttagaatg
aaattcgcagaggcagagcttacagtacagcgtggacaggttgggtgttt
gtacactatgatagtttaagttctatttgaggatgttgactggagtcagt
catg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38948056_38949301
seq2: B6Ng01-156D12.b_47_1270 (reverse)

seq1  ATTGGAAAATAAATGATTCTGATTTTAAGACATTTTCAGTGGTGATATGA  50
      |||||||||| ||||||   ||  || ||| | || |||| ||| |||||
seq2  ATTGGAAAAT-AATGATCTCGA--TTCAGA-ACTTCCAGT-GTG-TATGA  44

seq1  AATAAATTTATG-ATGCAGA-AAAAAATTATAGAGCAATTATCTGCAG-T  97
       ||  |  || |   || ||  |||||||| || || ||  ||||||| |
seq2  TATCTAGATACGTGCGCGGAGCAAAAATTAAAGGGCCATATTCTGCAGTT  94

seq1  CTTCATTTAAAACGAC-TATCTCATGATGAATGCCTGAAAGTCAGCCACC  146
      |||||  |||| |||| | |||||||||| ||| ||||||||||||   |
seq2  CTTCA--TAAACCGACTTTTCTCATGATG-ATG-CTGAAAGTCAGC--AC  138

seq1  GTGTCATGACATCTAGCATTGGCAGGGCACAGTTACCCATTGCTCTGTAA  196
      || ||||||||||||||||  ||| |||||||||||||| |||||| |||
seq2  GT-TCATGACATCTAGCAT--GCA-GGCACAGTTACCCA-TGCTCT-TAA  182

seq1  ACCCAATCTCCATCCCAGTGTTCTGCTCTGTACTGGATGCTCCTTTCTTG  246
      |||  |||||||||||||||||||||||||||||||||||||  ||||  
seq2  ACC--ATCTCCATCCCAGTGTTCTGCTCTGTACTGGATGCTC--TTCT--  226

seq1  TTTACAAGTGCTCTTTTAAAATCTTCCCATCAGCCCTTGTTTATATGTGG  296
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTACAAGTGCTCTTTTAAAATCTTCCCATCAGCCC-TGTTTATATGTGG  275

seq1  CAGACACACTGTCCCCCTTTCTGTAGCCCACTTTTGAAAACCCCTCTTTA  346
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGACACACTGTCCCCCTTTCTGTAGCCCAC-TTTGAAAACCCCTCTTTA  324

seq1  TTTCTTCATAGACCCACCACTTGAAATGTTGCATCTGCTGTATCACATGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATAGACCCACCACTTGAAATGTTGCATCTGCTGTATCACATGT  374

seq1  TCTCTCAAGGTGATCAATCCACACTCTATCTAAGTCTTTTTTCCATGTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAGGTGATCAATCCACACTCTATCTAAGTCTTTTTTCCATGTTC  424

seq1  CAGGAGTGTGAAGACATTCTTGCATGACGTATTATACACATGCTATCATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGTGAAGACATTCTTGCATGACGTATTATACACATGCTATCATT  474

seq1  TCGAAATTCACACAAAGGCCTGCAATATACCCTAAACTGACTTTCTCGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAATTCACACAAAGGCCTGCAATATACCCTAAACTGACTTTCTCGAT  524

seq1  TTTTGTCTTCATGGATTTCCAATTTTCTCTTACAAGTCTCCCTCTTTTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTCATGGATTTCCAATTTTCTCTTACAAGTCTCCCTCTTTTGC  574

seq1  TTGTCTAATCGAGATTTCTCTCTCTTTTCTCCCTTTATCATAATTTTATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAATCGAGATTTCTCTCTCTTTTCTCCCTTTATCATAATTTTATG  624

seq1  TTTCTTGTTCTCCTCATCTGCTTTCTTTATATTTTATTCTGGGTCTCCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTCTCCTCATCTGCTTTCTTTATATTTTATTCTGGGTCTCCTC  674

seq1  TCCCTTAATTTTTGTTGTTGCCTATGCTGTCTCTAATTCTTTCATCTTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAATTTTTGTTGTTGCCTATGCTGTCTCTAATTCTTTCATCTTTG  724

seq1  TATGGTTTAAATCATTTATTTTATTTTTCTGTATCTTATTTTACTCTACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTAAATCATTTATTTTATTTTTCTGTATCTTATTTTACTCTACA  774

seq1  TGTTCTAAACCGTCCATTTTCCATTGTTCCTGCTGCTATTTCATTGTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAACCGTCCATTTTCCATTGTTCCTGCTGCTATTTCATTGTTTT  824

seq1  TAATTTTTGCTTTTTTGAGGAGCTAAATTGAGCCCAGACTAGCTTAGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTGCTTTTTTGAGGAGCTAAATTGAGCCCAGACTAGCTTAGCAC  874

seq1  ACGTAAAGTGTGTTCTCTGCCACTGAGATGTATTCTCAGCCCTGCTGAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAAGTGTGTTCTCTGCCACTGAGATGTATTCTCAGCCCTGCTGAGG  924

seq1  GGGGCTATGCCTAACTGCTGACCCAAGCCACTTCCACTCAAAACCTGGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTATGCCTAACTGCTGACCCAAGCCACTTCCACTCAAAACCTGGCA  974

seq1  GATCTTTCAACTTAGAAACATAAGGAGCCAAGTCCCCGCCCCCAAATGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCAACTTAGAAACATAAGGAGCCAAGTCCCCGCCCCCAAATGAT  1024

seq1  GATAAAACCACACATTGGCACAGCTAAGAGGGCCTGACATACTGACTTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACCACACATTGGCACAGCTAAGAGGGCCTGACATACTGACTTTA  1074

seq1  GATGAGATTAGAAAGGTAGCTTGCCAACTAAGAGGCCATGATAACCTCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATTAGAAAGGTAGCTTGCCAACTAAGAGGCCATGATAACCTCTG  1124

seq1  GTTTATTGCAGATTTTGAGGGTTTAAGCTGTAGGAGTGAGGCAATCTGAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGCAGATTTTGAGGGTTTAAGCTGTAGGAGTGAGGCAATCTGAT  1174

seq1  TCCCTCTGTATAGTTTTCACAGGGATTACCATAGGCAGTGGGGAGAATTC  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGTATAGTTTTCACAGGGATTACCATAGGCAGTGGGGAGAATTC  1224

seq1: chr3_38834793_38835911
seq2: B6Ng01-156D12.g_68_1171

seq1  GAATTCCTTGTGAGAAGACCTTTTCATCTTTATGAGAAGGCCTTTAGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTGAGAAGACCTTTTCATCTTTATGAGAAGGCCTTTAGCGA  50

seq1  CTGAGCCACTTACCCAATCACCCAGGCTTTTCTTTTAGCTAGTCAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCACTTACCCAATCACCCAGGCTTTTCTTTTAGCTAGTCAGTTAA  100

seq1  AGATGAGTCTTGCTCTCTCGCTTAGGCTAAGATTGACTTTCTGGACAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTCTTGCTCTCTCGCTTAGGCTAAGATTGACTTTCTGGACAGCC  150

seq1  ACTTGCCTAGGCCTCCCAAATGTAGGACTTATGGTTCTGAACAGCCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTAGGCCTCCCAAATGTAGGACTTATGGTTCTGAACAGCCACAC  200

seq1  CTGGCTTTCTTTTCATTCTAAAGTGGGGAAAGAGATGGCCTCTAGCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTCTTTTCATTCTAAAGTGGGGAAAGAGATGGCCTCTAGCTAGA  250

seq1  TAGGGAGCTCAGCATTTATGAGCACTCATTGCTCTTACAGAGGACCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGCTCAGCATTTATGAGCACTCATTGCTCTTACAGAGGACCTGGA  300

seq1  TTAAGTTTCTAACAGCCACATAACAGCTTCTAACTGTTTGTAACTCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCTAACAGCCACATAACAGCTTCTAACTGTTTGTAACTCCTGT  350

seq1  ACCAGGGGATCCAACACCCTTTTCTGGCTTCCTTGAGCACCAGGCATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGATCCAACACCCTTTTCTGGCTTCCTTGAGCACCAGGCATGCA  400

seq1  CAGAATGCACATACAGATTTCAGTTTTCACTAGTGTGATGTTAGCTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGCACATACAGATTTCAGTTTTCACTAGTGTGATGTTAGCTGAGG  450

seq1  CAGAACATAATTTTCAGCCCCCCCTGGCTTTCCTGACACCTCACACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATAATTTTCAGCCCCCCCTGGCTTTCCTGACACCTCACACACAG  500

seq1  CTCCTGCCAGACTCTAATGGTATGTGATGTGAAGTCTTTCCTCCAAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCAGACTCTAATGGTATGTGATGTGAAGTCTTTCCTCCAAAGTC  550

seq1  TAATTTCCATGACAAGGATTCCCAGTTCTTAGTTCTAGACCATCTTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCATGACAAGGATTCCCAGTTCTTAGTTCTAGACCATCTTCAAG  600

seq1  ATGAGACATACACTCTTAGAACCACAGGCTGTGGAATTGGGTCGGTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACATACACTCTTAGAACCACAGGCTGTGGAATTGGGTCGGTTCTA  650

seq1  TGTGATAAATAAATAAATGCCTGAGCATATTGCTCATAGGCTGATCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAATAAATAAATGCCTGAGCATATTGCTCATAGGCTGATCATGA  700

seq1  CCCTGTGTGCCTCCATAGTCCAAACGCTGTGGTCCTGACATTTGGGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTGCCTCCATAGTCCAAACGCTGTGGTCCTGACATTTGGGCATT  750

seq1  TAAATGTAAGCTGTTCCTTGTTAAGACCTTCTCATAACTAAAATGTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAGCTGTTCCTTGTTAAGACCTTCTCATAACTAAAATGTGAGT  800

seq1  CACTCCCAAACTGTAATGGAAGTTGGCCCTGCAGCATGATAAACCAACTG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACTCCCAAACTGTAATGGAAGTTGGCTCTGCAGCATGATAAACCAACTG  850

seq1  CTCAGAACACAGGGTAAGCTTTGCCCAGAC-TCATGACAACAGAATTCCC  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCAGAACACAGGGTAAGCTTTGCCCAGACTTCATGACAACAGAATTCCC  900

seq1  AGTGGTCGCCCCAAATAGGGAAAGGCCCGAGGAACAAACTGAAAGCAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCGCCCCAAATAGGGAAAGGCCCGAGGAACAAACTGAAAGCAGTC  950

seq1  GGGTGGATCCTGGCACCATCCTTTACAGCAGCATCGTTTTTCCTTTTAAG  999
      |||| |||||||||||||| |||||||||||||||| |||||||||||  
seq2  GGGT-GATCCTGGCACCAT-CTTTACAGCAGCATCG-TTTTCCTTTTA--  995

seq1  AAATGAAAATTCGCAGAGGCCAGAGCCTAACAGTACAGCGTGGAACAGGG  1049
       |||| ||||||||||||| ||||| || |||||||||||||| |||  |
seq2  GAATG-AAATTCGCAGAGG-CAGAG-CTTACAGTACAGCGTGG-ACA--G  1039

seq1  GTTGGGTGTTTGTTACACTTATGATAAGTTTTAAGTTTCTATTTGA-GAT  1098
      |||||||||||| ||||| |||||||   |||||| |||||||||| |||
seq2  GTTGGGTGTTTG-TACAC-TATGATA--GTTTAAG-TTCTATTTGAGGAT  1084

seq1  GTTAACCTGGAGTCAGTCATG  1119
      ||| | |||||||||||||||
seq2  GTTGA-CTGGAGTCAGTCATG  1104