BAC Information

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BAC

Clone NameB6Ng01-156F17
Chromosome3 (Build37)2 (Build37)
Map Location 129,684,293 - 129,684,440127,563,188 - 127,564,078
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b
Downstream geneSec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156F17.bB6Ng01-156F17.g
ACCDH950882DH950883
length1,045895
definitionDH950882|Mus musculus domesticus DNA, BAC clone: B6Ng01-156F17, 5' end.DH950883|Mus musculus domesticus DNA, BAC clone: B6Ng01-156F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,684,293 - 129,684,440)(127,563,188 - 127,564,078)
sequence
gaattctccctttcttcttctttttctctctggctcacaaagagttaaca
aagtcctagcctctcacctggccgggaggggcccttgggccagagagaaa
ccaagccttttctctaattctgctgctaacagcttttagccacagaatag
caagagagggttaagtttcctgaggccatcagcttgtggcccccagaaca
gtaagagagagtcacaaggccagagatcatcagcctttggcctcagtcca
atgctgtttctcacctcagtacctgacccctgccagggctggtctcccaa
tactgacacaatggcattaatcttttgatggatgctataatggctagtct
tggttgcatttggaactgacaagaacccaagcatctaggcacacctgtga
gggaattttctcagttaaatcatctgaagtgtgacgattcaccttccatc
tgggccacaccttctggttggtctggtggcagcctatacaaaggacatgg
aagaaagaagcttttgctctttgcctgcttgctctcactggcaagcccat
ccattccttcactggcactggagcgcactttaggatcccagcacataatg
aagaccagctgagacatcgagcctggtggactgagcaactactggattct
tggacttgtcgttaatagacagccattgttggactagctggagcgcaccc
tgtaagccattctgatgaaccccttatatacagagacatccattctacca
gttctgtccctctagagagagccctgactaatacaggagcagagtcttca
aagtctaatcacctatactagaagccccgcctctcaaatgactgtggtgg
accttaactttcaacacagacatttggagggatacattcaaaaaaaaaaa
aatcattcgctgggcagtggtggagcacacctttaatcccagcacttgag
aggcagaggcaaacggatttctgagctcaagccagcctggtctacagagt
gagttcaggatagccaggctacacagagaaacctgttcccaaaaa
gaattccaggaaggtcaaggccaggtagccttgtataacagagcagagaa
caagagaccctccccaaataatatggtcaagcaaagccttccttccagtt
gcttctgttagggagtttgttgcagctttgcactctctctctctgaggtt
gtcctctgaacatcacatacactctctaaatgagcatcactcacacacac
acacaccacacacacacacacacacacacacacacacacacacacacaca
cacacacacacattctaaaaggtagtaataaagaggctaggcatctggat
ctggggaagaatagccttgtgatttcgtttctatggttctgatgtaggga
gtctcctcacctgccaggtaggcccctgtggggaaggcttctcctgcctg
cccttacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacagacacacacacgcacacacacacaccaggactgtttcc
aggatgcttttggctccttgacaaccctttcctgttttggaagctaaaag
gtgacatttaaaaagccagagaggttttgctgaaaaaacaagattccact
gactgaaaggaaggaaaagtttctcacaggcagggttatgccaccacatg
gcgctatcccctctagtcaggccaactccctgtgtccctctctttctggc
tcagcatcacctaaactgtggcagtcttttgaactttttccatgtgtcca
taagaacagggaagacagcctgaaagctctgaaaagtggctctttctcct
gttcctgcatccactaaaagacctcgccagcatttatttaattcacaaat
gcctggtggccagtcacaaataaagccacgaggtaaaacaacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_129684293_129684440
seq2: B6Ng01-156F17.b_932_1077 (reverse)

seq1  GGTTTCTCTGTGTATCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGG  50
      ||||||||||||||  ||||||| |||| |||||||||||||||||||||
seq2  GGTTTCTCTGTGTA-GCCTGGCTATCCT-GAACTCACTCTGTAGACCAGG  48

seq1  CTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGGGCTGGGA  100
      |||| ||  | |||||||||| |  |||||||||||| |||| |||||||
seq2  CTGG-CTTGAGCTCAGAAATCCGTTTGCCTCTGCCTCTCAAGTGCTGGGA  97

seq1  TTAAAGGTGTGTGCCACCACTGCCCGGC-ATTTTTTTTTTTTTTTTTGA  148
      |||||||||||  |||||||||||| || | |  |||||||||||||||
seq2  TTAAAGGTGTGCTCCACCACTGCCCAGCGAATGATTTTTTTTTTTTTGA  146

seq1: chr2_127563188_127564078
seq2: B6Ng01-156F17.g_67_961

seq1  GAATTCCAGGAAGGTCAAGGCCAGGTAGCCTTGTATAACAGAGCAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAGGTCAAGGCCAGGTAGCCTTGTATAACAGAGCAGAGAA  50

seq1  CAAGAGACCCTCCCCAAATAATATGGTCAAGCAAAGCCTTCCTTCCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACCCTCCCCAAATAATATGGTCAAGCAAAGCCTTCCTTCCAGTT  100

seq1  GCTTCTGTTAGGGAGTTTGTTGCAGCTTTGCACTCTCTCTCTCTGAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTAGGGAGTTTGTTGCAGCTTTGCACTCTCTCTCTCTGAGGTT  150

seq1  GTCCTCTGAACATCACATACACTCTCTAAATGAGCATCACTCACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGAACATCACATACACTCTCTAAATGAGCATCACTCACACACAC  200

seq1  ACACACCACACACACACACACACACACACACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACACACACACACACACACACACACACACACACACACACACACA  250

seq1  CACACACACACATTCTAAAAGGTAGTAATAAAGAGGCTAGGCATCTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATTCTAAAAGGTAGTAATAAAGAGGCTAGGCATCTGGAT  300

seq1  CTGGGGAAGAATAGCCTTGTGATTTCGTTTCTATGGTTCTGATGTAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGAATAGCCTTGTGATTTCGTTTCTATGGTTCTGATGTAGGGA  350

seq1  GTCTCCTCACCTGCCAGGTAGGCCCCTGTGGGGAAGGCTTCTCCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCACCTGCCAGGTAGGCCCCTGTGGGGAAGGCTTCTCCTGCCTG  400

seq1  CCCTTACACACACACACACACACACACACACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACACACACACACACACACACACACACACACACACACACACACACA  450

seq1  CACACACACACAGACACACACACGCACACACACACACCAGGACTGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGACACACACACGCACACACACACACCAGGACTGTTTCC  500

seq1  AGGATGCTTTTGGCTCCTTGACAACCCTTTCCTGTTTTGGAAGCTAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTTTTGGCTCCTTGACAACCCTTTCCTGTTTTGGAAGCTAAAAG  550

seq1  GTGACATTTAAAAAGCCAGAGAGGTTTTGCTGAAAAAACAAGATTCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTAAAAAGCCAGAGAGGTTTTGCTGAAAAAACAAGATTCCACT  600

seq1  GACTGAAAGGAAGGAAAAGTTTCTCACAGGCAGGGTTATGCCACCACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAAGGAAGGAAAAGTTTCTCACAGGCAGGGTTATGCCACCACATG  650

seq1  GCGCTATCCCCTCTAGTCAGGCCAACTCCCTGTGTCCCTCTCTTTCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTATCCCCTCTAGTCAGGCCAACTCCCTGTGTCCCTCTCTTTCTGGC  700

seq1  TCAGCATCACCTAAACTGTGGCAGTC-TTTGAACTTTTTCCATGTGTCCA  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAGCATCACCTAAACTGTGGCAGTCTTTTGAACTTTTTCCATGTGTCCA  750

seq1  TAAGAACAGGGAAGACAGCCTGAAAGCTCTG-AAAGTGGCTCTTTCTCCT  798
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAGAACAGGGAAGACAGCCTGAAAGCTCTGAAAAGTGGCTCTTTCTCCT  800

seq1  GTTCCTGCATCCACTAAAAGGACCTCGCCAGCATTTATTTAATTCACAAA  848
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTCCTGCATCCACTAAAA-GACCTCGCCAGCATTTATTTAATTCACAAA  849

seq1  TGCCTGGT-GCCAGTCACAAATAAGCCAACGAGGTAAA--AACACA  891
      |||||||| |||||||||||||||  | ||||||||||  ||||||
seq2  TGCCTGGTGGCCAGTCACAAATAAAGCCACGAGGTAAAACAACACA  895