BAC Information

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BAC

Clone NameB6Ng01-159K04
Chromosome3 (Build37)
Map Location 46,825,411 - 46,939,703
singlet/doubletdoublet
Overlap geneLOC545517, LOC383849
Upstream geneEG241989
Downstream geneLOC383850, LOC100039426, LOC666202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159K04.bB6Ng01-159K04.g
ACCDH953243DH953244
length1,0801,050
definitionDH953243|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K04, 5' end.DH953244|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,825,411 - 46,826,506)(46,938,639 - 46,939,703)
sequence
gaattcagtctttcaactacagatacattaacaagtcttggtcttaaaag
tttaggatatttatgtttatattctgtggttcctaagatccaatccatta
atggcaaggtagaggctgagctcaatgttaagtctctttttattcatgtt
gctggttccatttctaaaattgttgcatcaggtgcattaattttaaattt
cttttatggcaaagtcaactcagtattaactaaggatgatatagtttgga
aaggcaagagaaaagaagcaagcagtgtatattttctggaaaagaaacaa
tgcggatcacacacacacacacacacacacacacacacacacacacacaa
ctttagtgaaaaaatagtgacaataagtataaagtctgtatctatcattt
tgtttgtccgtatttgcacatggaacattcatcatatcaaggaagtttat
tatgtttacttttttacttatgataggaattttcttgccatttttaaggc
ctttcagcattatttatttttcttattagaagataaattgagatggcata
aatatgagatttcattttttaattatgtacttgttcaatgaaagtaactg
aaacaattgattcttttggttttactaaaaaacattctaagtgttatgcc
actaaatatcaatatggtatactaaaaatcattcctcttttcatcaggct
aatgaaaagtaaaatatgtacagaatgaaatagaagatgatagcatagct
cataatacatgactgtaggcatgggacaaacaagttgtaaaatcaaatgt
accggattgagtgaacaagtgatttctcagttagacttcactaaaaatta
cgtctgtgaaaagactgtcaagagctagccacagactggtggaaaatatt
gaaataaccatattcaatggaagactttatctgtaataaacgcaccaaaa
agaaacactgaaatgaaatggctgaaatttctaagacatctcaggaaaac
aatataaagtctcaaatagcattagaacctatcccctggattatcactgg
aagtacgtaaacatgagatactgtctatac
gaattcaaagatctttcatgttctttctctgctctactgtggactccacc
aactactctttacttcaactcaagtaatcctctcaatatcctgaatcttc
tgacttcttctttccctgactcagtaaaggagtaaacattggtgattagg
ccttatccttgcatcctggtttcaaggccttggtggtcagggttcagatg
gatatttggcccttaacctaagataataaaagaacaaaagagtgggccag
atttatgtagttaattaaggcatgacaggcattggttttataacttgtgt
accttaatttagataacaggcaattttttttctttacattcttttgtgat
ttactagtgaacagacaaacaagaaacattggaagaaatatggtaagagt
tggtcccaccaactcagtttgaagctgtcagcaggatggagaagttgtcg
ctaagatggctgaactcagacaagtgtctccttacaagatagtgccttta
tcacccttgagccatgtttctatgctgtttgattttttcctaatggatgc
caatgggctacccctgatacactaatacaagaagatttctgtctttaaat
tttcttaaattaatttacctttgagatttgataatagatacttagttcca
tgacatgtgccaattttattacttagataattcccctcttttgactgttt
ttttctctcttctccctcagtcctgctgtgggttctgctggctcttatgc
tcaccatagatcagtgggggaaaaataaactgtttcagaatgttcattga
aaatagtttgtaagggactcatcatggaacaaaatgattaaactcttttt
agttgatccattaaactgttatcttcttctatctgtttcatttaaattaa
agcacaaataatgttttggtatcttttattgcttaaaatatgttaactta
attgaaaatagttttaatgtatatattctatatatgatttcctccataaa
cttcccttgatcctccatcttcgtccactaattccctctcctccttagat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46825411_46826506
seq2: B6Ng01-159K04.b_46_1125

seq1  GAATTCAGTCTTTCAACTACAGATACATTAACAAGTCTTGGTCTTAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTTCAACTACAGATACATTAACAAGTCTTGGTCTTAAAAG  50

seq1  TTTAGGATATTTATGTTTATATTCTGTGGTTCCTAAGATCCAATCCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATATTTATGTTTATATTCTGTGGTTCCTAAGATCCAATCCATTA  100

seq1  ATGGCAAGGTAGAGGCTGAGCTCAATGTTAAGTCTCTTTTTATTCATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGGTAGAGGCTGAGCTCAATGTTAAGTCTCTTTTTATTCATGTT  150

seq1  GCTGGTTCCATTTCTAAAATTGTTGCATCAGGTGCATTAATTTTAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTCCATTTCTAAAATTGTTGCATCAGGTGCATTAATTTTAAATTT  200

seq1  CTTTTATGGCAAAGTCAACTCAGTATTAACTAAGGATGATATAGTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGGCAAAGTCAACTCAGTATTAACTAAGGATGATATAGTTTGGA  250

seq1  AAGGCAAGAGAAAAGAAGCAAGCAGTGTATATTTTCTGGAAAAGAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGAGAAAAGAAGCAAGCAGTGTATATTTTCTGGAAAAGAAACAA  300

seq1  TGCGGATCACACACACACACACACACACACACACACACACACACACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGATCACACACACACACACACACACACACACACACACACACACACAA  350

seq1  CTTTAGTGAAAAAATAGTGACAATAAGTATAAAGTCTGTATCTATCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGAAAAAATAGTGACAATAAGTATAAAGTCTGTATCTATCATTT  400

seq1  TGTTTGTCCGTATTTGCACATGGAACATTCATCATATCAAGGAAGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCCGTATTTGCACATGGAACATTCATCATATCAAGGAAGTTTAT  450

seq1  TATGTTTACTTTTTTACTTATGATAGGAATTTTCTTGCCATTTTTAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTACTTTTTTACTTATGATAGGAATTTTCTTGCCATTTTTAAGGC  500

seq1  CTTTCAGCATTATTTATTTTTCTTATTAGAAGATAAATTGAGATGGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCATTATTTATTTTTCTTATTAGAAGATAAATTGAGATGGCATA  550

seq1  AATATGAGATTTCATTTTTTAATTATGTACTTGTTCAATGAAAGTAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGATTTCATTTTTTAATTATGTACTTGTTCAATGAAAGTAACTG  600

seq1  AAACAATTGATTCTTTTGGTTTTACTAAAAAACATTCTAAGTGTTATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTGATTCTTTTGGTTTTACTAAAAAACATTCTAAGTGTTATGCC  650

seq1  ACTAAATATCAATATGGTATACTAAAAATCATTCCTCTTTTCATCAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATATCAATATGGTATACTAAAAATCATTCCTCTTTTCATCAGGCT  700

seq1  AATGAAAAGTAAAATATGTACAGAATGAAATAGAAGATGATAGCATAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGTAAAATATGTACAGAATGAAATAGAAGATGATAGCATAGCT  750

seq1  CATAATACATGACTGTAGGCATGGGACAAACAAGTTGTAAAATCAAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATACATGACTGTAGGCATGGGACAAACAAGTTGTAAAATCAAATGT  800

seq1  ACCGGATTGAGTGAACAAGTGATTTCTCAGTTAGACTTCACTAAAAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGATTGAGTGAACAAGTGATTTCTCAGTTAGACTTCACTAAAAATTA  850

seq1  CGTCTGTGAAAAGACTGTCAAGAGCTAGCCACAGACTGGTGGAAAATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTGAAAAGACTGTCAAGAGCTAGCCACAGACTGGTGGAAAATATT  900

seq1  GAAATAACCATATTCAATGGAAGACTTTTATCTGTAATAAAACGCACCAA  950
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  GAAATAACCATATTCAATGGAAGAC-TTTATCTGTAAT-AAACGCACCAA  948

seq1  AAAGAAAACAACTGAAATGGAAATGGCTGAAATTTCTAAAGACCATCTCA  1000
      |||||||   |||||||| |||||||||||||||||| |||| |||||||
seq2  AAAGAAA--CACTGAAAT-GAAATGGCTGAAATTTCT-AAGA-CATCTCA  993

seq1  GGAAAACAAATATAAAAGTCTCAAATAGCATATAGAACCTATCCCCCTGT  1050
      ||||||| ||||| ||||||||||||||||| |||||||||| |||||| 
seq2  GGAAAAC-AATAT-AAAGTCTCAAATAGCAT-TAGAACCTAT-CCCCTGG  1039

seq1  ATATATCACTGAGAAGTAACATTAAAACAATGAGATACTGTC-ATAC  1096
      || |||||||| ||||| || |  |||| ||||||||||||| ||||
seq2  AT-TATCACTG-GAAGT-ACGT--AAAC-ATGAGATACTGTCTATAC  1080

seq1: chr3_46938639_46939703
seq2: B6Ng01-159K04.g_67_1116 (reverse)

seq1  ATCTATAGGAGAGAGAGGGGAATTAGGTGGGAAGGGAAGATTGGAGGATC  50
      ||||| ||||| |||| |||||||| ||||     ||||| |||||||||
seq2  ATCTA-AGGAG-GAGA-GGGAATTA-GTGG---ACGAAGA-TGGAGGATC  42

seq1  AAGGGAAAGTTTATGGAGGAAAATCATATATAGAATATATTACATTAAAA  100
      ||||| ||||||||||||| ||||||||||||||||||| |||||| |||
seq2  AAGGG-AAGTTTATGGAGG-AAATCATATATAGAATATA-TACATT-AAA  88

seq1  ACTATTTTCAATTAAGTTAACATATTTTTAAGCAATAAAAGATACCAAAA  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTATTTTCAATTAAGTTAACATA-TTTTAAGCAATAAAAGATACCAAAA  137

seq1  CATTATTTTGTGCTTTTAATTTAAATGAAACAGATAGAAGAAAGATAACA  200
      ||||| ||||||| |||||||||||||||||||||||||| |||||||||
seq2  CATTA-TTTGTGC-TTTAATTTAAATGAAACAGATAGAAG-AAGATAACA  184

seq1  GTTTAATGGATCAACTAAAAAGAGTTTAATCATTTTGTTCCATGATGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGGATCAACTAAAAAGAGTTTAATCATTTTGTTCCATGATGAGT  234

seq1  CCCTTACAAACTATTTTCAATGAACATTCTG-AACAGTTTATTTTTCCCC  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCTTACAAACTATTTTCAATGAACATTCTGAAACAGTTTATTTTTCCCC  284

seq1  CACTGATCTATGGTGAGCATAAGAGCCAGCAGAACCCACAGCAGGACTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATCTATGGTGAGCATAAGAGCCAGCAGAACCCACAGCAGGACTGA  334

seq1  GGGAGAAGAGAGAAAAAAACAGTCAAAAGAGGGGAATTATCTAAGTAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGAGAGAAAAAAACAGTCAAAAGAGGGGAATTATCTAAGTAATA  384

seq1  AAATTGGCACATGTCATGGAACTAAGTATCTATTATCAAATCTCAAAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCACATGTCATGGAACTAAGTATCTATTATCAAATCTCAAAGGT  434

seq1  AAATTAATTTAAGAAAATTTAAAGACAGAAATCTTCTTGTATTAGTGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTTAAGAAAATTTAAAGACAGAAATCTTCTTGTATTAGTGTAT  484

seq1  CAGGGGTAGCCCATTGGCATCCATTAGGAAAAAATCAAACAGCATAGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTAGCCCATTGGCATCCATTAGGAAAAAATCAAACAGCATAGAAA  534

seq1  CATGGCTCAAGGGTGATAAAGGCACTATCTTGTAAGGAGACACTTGTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTCAAGGGTGATAAAGGCACTATCTTGTAAGGAGACACTTGTCTG  584

seq1  AGTTCAGCCATCTTAGCGACAACTTCTCCATCCTGCTGACAGCTTCAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCCATCTTAGCGACAACTTCTCCATCCTGCTGACAGCTTCAAAC  634

seq1  TGAGTTGGTGGGACCAACTCTTACCATATTTCTTCCAATGTTTCTTGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGTGGGACCAACTCTTACCATATTTCTTCCAATGTTTCTTGTTT  684

seq1  GTCTGTTCACTAGTAAATCACAAAAGAATGTAAAGAAAAAAAATTGCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCACTAGTAAATCACAAAAGAATGTAAAGAAAAAAAATTGCCTG  734

seq1  TTATCTAAATTAAGGTACACAAGTTATAAAACCAATGCCTGTCATGCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAAATTAAGGTACACAAGTTATAAAACCAATGCCTGTCATGCCTT  784

seq1  AATTAACTACATAAATCTGGCCCACTCTTTTGTTCTTTTATTATCTTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTACATAAATCTGGCCCACTCTTTTGTTCTTTTATTATCTTAGG  834

seq1  TTAAGGGCCAAATATCCATCTGAACCCTGACCACCAAGGCCTTGAAACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCCAAATATCCATCTGAACCCTGACCACCAAGGCCTTGAAACCA  884

seq1  GGATGCAAGGATAAGGCCTAATCACCAATGTTTACTCCTTTACTGAGTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAAGGATAAGGCCTAATCACCAATGTTTACTCCTTTACTGAGTCA  934

seq1  GGGAAAGAAGAAGTCAGAAGATTCAGGATATTGAGAGGATTACTTGAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAAGAAGTCAGAAGATTCAGGATATTGAGAGGATTACTTGAGTT  984

seq1  GAAGTAAAGAGTAGTTGGTGGAGTCCACAGTAGAGCAGAGAAAGAACATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAGAGTAGTTGGTGGAGTCCACAGTAGAGCAGAGAAAGAACATG  1034

seq1  AAAGATCTTTGAATTC  1065
      ||||||||||||||||
seq2  AAAGATCTTTGAATTC  1050