BAC Information

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BAC

Clone NameB6Ng01-160P18
Chromosome3 (Build37)
Map Location 126,156,969 - 126,297,369
singlet/doubletdoublet
Overlap genenone
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P18.bB6Ng01-160P18.g
ACCDH954220DH954221
length8641,137
definitionDH954220|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P18, 5' end.DH954221|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,296,836 - 126,297,369)(126,156,969 - 126,158,119)
sequence
gaattcacaattattcctaaagttagggcttccttaagataataatcaga
ttgattatttttggttgtgagactagcctttaatggttgaaccatctctc
cagccttaattataattctcttagttctatttcattattttaggaatacc
tgcaaaatagttaaattttttaaaaggcatacttgtaaacagagtgacta
gaatttagtgtcaaatgtatttgcctttagtcaaatgtccttatctgact
attgcagtgaaccaagaggaatgaaagagtaataaagaaaggagactctt
aatagttattcaggaagggctggagagatggctcagcagttaagagcact
gactgttcttccagaggtcatgagttcaattcccagcaaccacatggtag
ctcacaaccatctgtaatgggatctgatgccttcttctggtgtgtctgag
gacagctacagcatactcacataaataacaaataaataaatcttttggaa
aaaaaaaagaattattcatggaacttgcttaaaatggtaagacagatttt
attctaactggaccatggtgacaggaacagtttgtaacttcatctttctc
aactccgactcaaaagaggacaagcaaagattgacaacaaaggaacgtat
ggggggacagggggtgtagcacggactgaacagtttcttcctcttgtccc
gttttgctacttggaactaagagtttcagaactttagtattctcactcag
aatggacacgagtctaacattacatggttatactaagccttaaccgtgac
tttccttcagacaaaccttccaggaaacacagcactgacctccaagggta
gaagagttccactc
gaattctctgaagcttttctaagtgaatgcaacgcaatcaaatcgccatg
atattgtcactcacccaaccttcccctcgtttcagaacagatgttgtcta
tgaattcctaaagtactcaaattaagccaatatatttgaatgttttttat
gactgcatgggaaaataaataatgaatgtcagtgacatgagatacataag
agatcgataattttgtttgctccttttgtctaagtccaacaaacataatt
ggtattggtaggaggaaagacatgtaccaaaaggcattctgtgctcacat
acatctgcagagcacacgaaagtacaggtattttattggttagatccagc
attgttgttctttttgtttttaatatgagaaaaaacaaatactttgtgag
aaagccgtgtgttcttacactagacatttgtagctagtgtaactttgcat
gagtacgactgagatgccaaacaagcagcaacttaagggaggaggggctc
cttttgtccatcttttgagatgaaacagtctaccaaggatggaaaggcct
ggtggcttttcatctgtgagaaggaaaatgttggagtcaattgaagcatt
tcaacaaaggacaaaattgattctttgcaagtcatggtatccaaaaatag
atgctaccagcctttcatccagacacagcctctctcttacctggctattg
cctcatcctagggctatacaggttagcagagcttaacctctctcaaaccc
cataatacttagcctccaatttgaaaagagttggagccaaggagtagttt
tatgcctactgactcatcaaacaatataaagtggtatgtattgggaccct
gatgcggaaggtcacactccaccacatcctcttccagtagaatgtcacat
agccttgatgagagattacaaggttcagctttcctttctccctaataaga
acttgtcaaggaaactggagtcctggaatgcctctccatgcagtgagaca
tcctcaaatttctaactccagccaaaacactacccacctggaattcctta
ccttgtttcaaacctatataaccttgaatcacacaataagcttgactgct
tctctgaagcctatctgaagtcctcatttctgctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126296836_126297369
seq2: B6Ng01-160P18.b_42_575 (reverse)

seq1  TTTTAAGCAAGTTCCATGAATAATTCTTTTTTTTTTCCAAAAGATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCAAGTTCCATGAATAATTCTTTTTTTTTTCCAAAAGATTTATT  50

seq1  TATTTGTTATTTATGTGAGTATGCTGTAGCTGTCCTCAGACACACCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTATTTATGTGAGTATGCTGTAGCTGTCCTCAGACACACCAGAA  100

seq1  GAAGGCATCAGATCCCATTACAGATGGTTGTGAGCTACCATGTGGTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATCAGATCCCATTACAGATGGTTGTGAGCTACCATGTGGTTGCT  150

seq1  GGGAATTGAACTCATGACCTCTGGAAGAACAGTCAGTGCTCTTAACTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGAACTCATGACCTCTGGAAGAACAGTCAGTGCTCTTAACTGCT  200

seq1  GAGCCATCTCTCCAGCCCTTCCTGAATAACTATTAAGAGTCTCCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCTCCAGCCCTTCCTGAATAACTATTAAGAGTCTCCTTTCTT  250

seq1  TATTACTCTTTCATTCCTCTTGGTTCACTGCAATAGTCAGATAAGGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTCTTTCATTCCTCTTGGTTCACTGCAATAGTCAGATAAGGACAT  300

seq1  TTGACTAAAGGCAAATACATTTGACACTAAATTCTAGTCACTCTGTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAAAGGCAAATACATTTGACACTAAATTCTAGTCACTCTGTTTAC  350

seq1  AAGTATGCCTTTTAAAAAATTTAACTATTTTGCAGGTATTCCTAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCCTTTTAAAAAATTTAACTATTTTGCAGGTATTCCTAAAATAA  400

seq1  TGAAATAGAACTAAGAGAATTATAATTAAGGCTGGAGAGATGGTTCAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGAACTAAGAGAATTATAATTAAGGCTGGAGAGATGGTTCAACC  450

seq1  ATTAAAGGCTAGTCTCACAACCAAAAATAATCAATCTGATTATTATCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCTAGTCTCACAACCAAAAATAATCAATCTGATTATTATCTTA  500

seq1  AGGAAGCCCTAACTTTAGGAATAATTGTGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCCTAACTTTAGGAATAATTGTGAATTC  534

seq1: chr3_126156969_126158119
seq2: B6Ng01-160P18.g_69_1205

seq1  GAATTCTCTGAAGCTTTTCTAAGTGAATGCAACGCAATCAAATCGCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAGCTTTTCTAAGTGAATGCAACGCAATCAAATCGCCATG  50

seq1  ATATTGTCACTCACCCAACCTTCCCCTCGTTTCAGAACAGATGTTGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCACTCACCCAACCTTCCCCTCGTTTCAGAACAGATGTTGTCTA  100

seq1  TGAATTCCTAAAGTACTCAAATTAAGCCAATATATTTGAATGTTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCTAAAGTACTCAAATTAAGCCAATATATTTGAATGTTTTTTAT  150

seq1  GACTGCATGGGAAAATAAATAATGAATGTCAGTGACATGAGATACATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATGGGAAAATAAATAATGAATGTCAGTGACATGAGATACATAAG  200

seq1  AGATCGATAATTTTGTTTGCTCCTTTTGTCTAAGTCCAACAAACATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGATAATTTTGTTTGCTCCTTTTGTCTAAGTCCAACAAACATAATT  250

seq1  GGTATTGGTAGGAGGAAAGACATGTACCAAAAGGCATTCTGTGCTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGGTAGGAGGAAAGACATGTACCAAAAGGCATTCTGTGCTCACAT  300

seq1  ACATCTGCAGAGCACACGAAAGTACAGGTATTTTATTGGTTAGATCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCAGAGCACACGAAAGTACAGGTATTTTATTGGTTAGATCCAGC  350

seq1  ATTGTTGTTCTTTTTGTTTTTAATATGAGAAAAAACAAATACTTTGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTCTTTTTGTTTTTAATATGAGAAAAAACAAATACTTTGTGAG  400

seq1  AAAGCCGTGTGTTCTTACACTAGACATTTGTAGCTAGTGTAACTTTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCGTGTGTTCTTACACTAGACATTTGTAGCTAGTGTAACTTTGCAT  450

seq1  GAGTACGACTGAGATGCCAAACAAGCAGCAACTTAAGGGAGGAGGGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACGACTGAGATGCCAAACAAGCAGCAACTTAAGGGAGGAGGGGCTC  500

seq1  CTTTTGTCCATCTTTTGAGATGAAACAGTCTACCAAGGATGGAAAGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCCATCTTTTGAGATGAAACAGTCTACCAAGGATGGAAAGGCCT  550

seq1  GGTGGCTTTTCATCTGTGAGAAGGAAAATGTTGGAGTCAATTGAAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTTTCATCTGTGAGAAGGAAAATGTTGGAGTCAATTGAAGCATT  600

seq1  TCAACAAAGGACAAAATTGATTCTTTGCAAGTCATGGTATCCAAAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAGGACAAAATTGATTCTTTGCAAGTCATGGTATCCAAAAATAG  650

seq1  ATGCTACCAGCCTTTCATCCAGACACAGCCTCTCTCTTACCTGGCTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACCAGCCTTTCATCCAGACACAGCCTCTCTCTTACCTGGCTATTG  700

seq1  CCTCATCCTAGGGCTATAACAGGTTAGCAGAGCTTAACCTCTCTCAAAAC  750
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  CCTCATCCTAGGGCTAT-ACAGGTTAGCAGAGCTTAACCTCTCTC-AAAC  748

seq1  CCCATAATACTTAGCCTCCAATTTGAAAAGAGTTGGAGCCAAGGAGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAATACTTAGCCTCCAATTTGAAAAGAGTTGGAGCCAAGGAGTAGT  798

seq1  TTTATGCCTACTGACTCATCAAACAATATAAAGTGGTATGTATT-GGACC  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTATGCCTACTGACTCATCAAACAATATAAAGTGGTATGTATTGGGACC  848

seq1  CTGATGCGGAAGGTCACACTCCACCACATCCTCTCCCAGTAGAATGTCAC  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGATGCGGAAGGTCACACTCCACCACATCCTCTTCCAGTAGAATGTCAC  898

seq1  ATAGCCTTGATGAGAAGATTAC-AGGTTCAGC-TTCCTTTCTCCCT-ATA  946
      |||||||||||||| ||||||| ||||||||| ||||||||||||| |||
seq2  ATAGCCTTGATGAG-AGATTACAAGGTTCAGCTTTCCTTTCTCCCTAATA  947

seq1  AGAACTTGTCAAGGAACCTGGAGTTCCTGGAATGCCTCTCCATGCAAGTG  996
      |||||||||||||||| |||||| ||||||||||||||||||||| ||||
seq2  AGAACTTGTCAAGGAAACTGGAG-TCCTGGAATGCCTCTCCATGC-AGTG  995

seq1  AGACATTCTTCATATTCTAAACTCCAGCCAAAAACACATACCCACCCTGG  1046
      ||||| || ||| |||   |||||||||| ||||||| |||||| |||||
seq2  AGACA-TCCTCAAATTTCTAACTCCAGCC-AAAACAC-TACCCA-CCTGG  1041

seq1  AAATCCCTACCCTGTTTCCAAAACCTATATAACCCTTGATTCACACCAAA  1096
      || ||| |||| ||||||  |||||||||||| |||||| ||||||  ||
seq2  AATTCCTTACCTTGTTTC--AAACCTATATAA-CCTTGAATCACAC--AA  1086

seq1  TAAAGCTGAGCTGCTTCTCTGAAGCTAATCCTGGAAGTCCCTCATTTCTG  1146
      | |||||   |||||||||||||||  |||   ||||| |||||||||||
seq2  T-AAGCTTGACTGCTTCTCTGAAGCCTATC--TGAAGT-CCTCATTTCTG  1132

seq1  CTGTA  1151
      |||||
seq2  CTGTA  1137