BAC Information

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BAC

Clone NameB6Ng01-161I19
Chromosome3 (Build37)19 (Build37)
Map Location 41,059,400 - 41,059,73713,788,505 - 13,789,366
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161I19.bB6Ng01-161I19.g
ACCDH954632DH954633
length956936
definitionDH954632|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I19, 5' end.DH954633|Mus musculus domesticus DNA, BAC clone: B6Ng01-161I19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,400 - 41,059,737)(13,788,505 - 13,789,366)
sequence
gaattcttggtttagctctgtaccccattcttttttaatagggttatttg
attttctggagtccaccttcttgagttctttatatatatattggatatta
gtcccctatctgatttaggattggtagttcttttcccaatcggttggtgg
cctttttgtcttattgacagtgtcttttggccttacagaagctttgcaat
tttatgaggtcccatttgtcgattctcgatcttacagtacaagccattgc
tgttctgttcaggaattttccccctgtgcccatatgttcgaggctttccc
ccacttcctcctctataagtttcagtgtctctggttttatgtggagcaca
gtgattccaccagaggttcttttatcattgagaagagtttttgctatcct
agggtttttgttattccagataaatttgaaaattgccgttttctaactct
gtgaattgagttggaattttggtctttgtaagtccctaggagtacaggtt
agttgactctgtaagtctttattattattattattattattattattatt
attattattattaaattttctttacatttcaattgctatcccctttccta
gtttcccctccaaaaacccctatcacctccgacttttccgctcaccatct
cacccactcccatttatatggtgtccttgactcttccagttcacttactt
ctatccccactcttctacaagactcctacagctctgcctaatgtttggct
gtgggtttctgcatctgttttaatcaattgctgtgtgaaacctctcagta
gagagttacactagattcctgtctggaagaatggcagaatatcattaata
ataccagggcttgggttctctatccaggtttatccctgtgcatattgtag
cagacaaagtttagtgtaagtttttgtgatgggtaatgttccccttcttt
ctctgg
gaattcagaggacttaagacaagcatagagaattttctgtggaaatacac
acaaacacacacacaatcattttttggaaaagctaacatcatattaagta
gttaaagattgagtataaatccattctttcttttctttttcttttgattg
catgttttgttttattgaatagtcataatctgggtgtgttctgttcatgt
gactggaaaatggtcatagaattggtcatttgaaaggtatttcatatctt
atttaattccttcatgctagaaaacatatcaaacccttactgagttctta
ggaagcatacacggactagacaaagctgacaggaggtaggtgtcttatag
aaaatatatgtttcattgacctagagctaatataaaaatctctcctctga
ggatgaattttcatggtaccgaagggcactatacaggagtcaaaagtagg
aaggcaaccaacagtcctacccagatgtgacacttatgaacgcaataacc
aggatggcgcattatactaagactgcagcaatgacacatatactctcatg
gtaaatcattctctaattggactgattattaattattggactgatcaaca
acaaggaaatcatttctggtgctggaaatctagcctactacccatgacta
atgaagtcattgcagaagataatataaattacaactttactaaaccagca
taacccccatccacattctaaactcaagtgccagacccacagaaaactgc
agtctatactcttcatcgtggaaactcctttttgcagcaaatagagatta
ttatatgaaacaacaaccaattaaaatatctagagattgaggagctcatt
gtgagagtgtgtgtctaggaatgtaagagacacacccagaaagtctcaca
acatgactgcctaaatgtgagctgaacgagacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059400_41059737
seq2: B6Ng01-161I19.b_44_386 (reverse)

seq1  CCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAA  50
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  CCACATAAAACCAGAGACACTGAAACTTATAGAGGAGGAAGTGGGGGAAA  50

seq1  GCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATG  100
      |||| ||| |||||| |||||||| |||||||||| | ||||||||||||
seq2  GCCTCGAACATATGGGCACAGGGGGAAAATTCCTGAACAGAACAGCAATG  100

seq1  GCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCA  150
      |||||| ||||||||| |||||| ||||||||||||||||| ||| ||||
seq2  GCTTGTACTGTAAGATCGAGAATCGACAAATGGGACCTCATAAAATTGCA  150

seq1  AAGCTTCTGCAAGG-CAAAAGACACCGTCAATAAGACAAAAAGG-CACCA  198
      ||||||||| |||| |||||||||| |||||||||||||||||| |||||
seq2  AAGCTTCTGTAAGGCCAAAAGACACTGTCAATAAGACAAAAAGGCCACCA  200

seq1  ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT  248
      || |||||||||| || |  |||| |||||||||||||||||||||||||
seq2  ACCGATTGGGAAAAGAAC--TACCAATCCTAAATCAGATAGGGGACTAAT  248

seq1  ATCCA--ATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAA  296
      |||||  |||||||| ||||||||||||||||||| ||||||||||||||
seq2  ATCCAATATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAA  298

seq1  TAACCCCATTAAAA---AATGGGGCTCAGAGCTAAACAAAGAATT  338
      |||||| |||||||   |||||||  ||||||||||| |||||||
seq2  TAACCCTATTAAAAAAGAATGGGGTACAGAGCTAAACCAAGAATT  343

seq1: chr19_13788505_13789366
seq2: B6Ng01-161I19.g_69_929

seq1  GAATTCAGAGGACTTAAGACAAGCATAGAGAATTTTCTGTGGAAATACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGACTTAAGACAAGCATAGAGAATTTTCTGTGGAAATACAC  50

seq1  ACAAACACACACACAATCATTTTTTGGAAAAGCTAACATCATATTAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACACACACAATCATTTTTTGGAAAAGCTAACATCATATTAAGTA  100

seq1  GTTAAAGATTGAGTATAAATCCATTCTTTCTTTTCTTTTTCTTTTGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGATTGAGTATAAATCCATTCTTTCTTTTCTTTTTCTTTTGATTG  150

seq1  CATGTTTTGTTTTATTGAATAGTCATAATCTGGGTGTGTTCTGTTCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTGTTTTATTGAATAGTCATAATCTGGGTGTGTTCTGTTCATGT  200

seq1  GACTGGAAAATGGTCATAGAATTGGTCATTTGAAAGGTATTTCATATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAAATGGTCATAGAATTGGTCATTTGAAAGGTATTTCATATCTT  250

seq1  ATTTAATTCCTTCATGCTAGAAAACATATCAAACCCTTACTGAGTTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCCTTCATGCTAGAAAACATATCAAACCCTTACTGAGTTCTTA  300

seq1  GGAAGCATACACGGACTAGACAAAGCTGACAGGAGGTAGGTGTCTTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATACACGGACTAGACAAAGCTGACAGGAGGTAGGTGTCTTATAG  350

seq1  AAAATATATGTTTCATTGACCTAGAGCTAATATAAAAATCTCTCCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATGTTTCATTGACCTAGAGCTAATATAAAAATCTCTCCTCTGA  400

seq1  GGATGAATTTTCATGGTACCGAAGGGCACTATACAGGAGTCAAAAGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATTTTCATGGTACCGAAGGGCACTATACAGGAGTCAAAAGTAGG  450

seq1  AAGGCAACCAACAGTCCTACCCAGATGTGACACTTATGAACGCAATAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACCAACAGTCCTACCCAGATGTGACACTTATGAACGCAATAACC  500

seq1  AGGATGGCGCATTATACTAAGACTGCAGCAATGACACATATACTCTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGCGCATTATACTAAGACTGCAGCAATGACACATATACTCTCATG  550

seq1  GTAAATCATTCTCTAATTGGACTGATTATTAATTATTGGACTGATCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCATTCTCTAATTGGACTGATTATTAATTATTGGACTGATCAACA  600

seq1  ACAAGGAAATCATTTCTGGTGCTGGAAATCTAGCCTACTACCCATGACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAATCATTTCTGGTGCTGGAAATCTAGCCTACTACCCATGACTA  650

seq1  ATGAAGTCATTGCAGAAGATAATATAAATTACAACTTTACTAAACCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCATTGCAGAAGATAATATAAATTACAACTTTACTAAACCAGCA  700

seq1  TAACCCCCATCCACATTCTAAACTCAAGTGCCAGACCCACAGAAAACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCCATCCACATTCTAAACTCAAGTGCCAGACCCACAGAAAACTGC  750

seq1  AGTCTATACTCTTCATCGTGGAAACTCCTTTTTGCAGCAAATAGAGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATACTCTTCATCGTGGAAACTCCTTTTTGCAGCAAATAGAGATTA  800

seq1  TTATATGAAACAACAACCAATTAAAATATCTAGAGGATTGAGGAGCTCAT  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTATATGAAACAACAACCAATTAAAATATCTAGA-GATTGAGGAGCTCAT  849

seq1  TGTGAGAGTGTG  862
      ||||||||||||
seq2  TGTGAGAGTGTG  861