BAC Information

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BAC

Clone NameB6Ng01-162I10
Chromosome3 (Build37)
Map Location 5,886,305 - 5,887,224
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620283, Zfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162I10.bB6Ng01-162I10.g
ACCDH955344DH955345
length1,260921
definitionDH955344|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I10, 5' end.DH955345|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccaaagggctaagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcacatcaaaacacccctgagat
tccacttcacaccagtcagagtggctaggatcaaaaattcaggtgacagc
atatgctggcaaggatgtggagaaagaggaacactcctcctttgctggtg
ggattgcaagctggtacaaccactctgaaaatcagtctgggggttcctca
gaaaactgtacatagtactcctgctaggtccagcaatacctctccttggc
atatacccagaagatgttccaactgctaataaggacccatgcttcactat
gttcatagcagccctatttttaaaagccagaagctggaaagaacagagat
gtccttcaacaaaagactggatacagaaactgtggtacctttacacaatg
gaatactactcagctattaaaaacaatgaatttatgaaattctttggcaa
atggatgtatctggaggatagcatccttagtgaggtaacccaataacaaa
agaagtcacttaatatgtactcactgataagtggatattagcccagaaac
ctagaatacctaagatacaacttccaaaacaagaaaataaggaaggaaga
tcaacaggtggatacttcattcctctctagaatagggaataaaatatcca
tggaaggagttgcagagacaaagtttgtagctaagatgaaaggatggacc
atccagagactgccccaccctggagtccatcccataatcagccaccaaac
ccagacactattgctgcagactatccccttattgggtctcctatctgtgt
ggaatgggtctctggttgcaggtggacaaggagtcagagaatgacaaaca
gaagcgacacaggagatagtgcagaatctgaatgtaatttgtcaaattga
gcctcaaacttcttatacagagaaaatagggcagttgggtgacacactgg
caaggtacaaaataggtactggattcttacaccaagcagaggaatgcaac
acggagactgtcagatcaactgggataaattcatgttaaaactgggatca
aaaatagctcacctaaaattctgaacagaacagccatggctttgttactt
gttaggatcgagattgacattggacctaatggaactcaaggttctgcagc
aaagaacctgtctttagaacaaaagacactcaacaaacctggggaaagag
gactctttac
gaattctattgctgtagcaaaacatgttgaccaaagtaacctggaaagaa
agagtttcttcaactaactgcttataggttcatcatctggggaaactagg
caagaacccagtgcaggaaactggaggcaagaactgagacaggggccatg
gtggagtgctgcttgctgtcttgtttatcctacttttttatagctcccag
aactacccaaagtgaacatctatgtaagcatcaacaaagagaaggcacca
gagactttccaacaagtcaatatgggagagaaattttttcaattgcagtt
cctgcttccaaaatgactccagcttgtaccaagttgacttaaaattagtt
agcacactgatataatgatttcttttccaaaacaaaataccttataattg
ctataaatatactgctgaaatgctttaaagaaaaatgtcatacttttatg
tttattccagcttctaggtttttaagaattttaaatatactgagatattg
tctaattcatatacaaatctgaaaagtggttagtagtttaaaaataattt
cttttttctccaaattttattttcaaaataaaattttctcttaacctaaa
aataaaaaccaattaattttcaatcaaaatattcaagtagagtatatgaa
tatatataatttaaatttctgtaaatgaaatataaatgtagatctgtata
actaaaatttagaataactaaaagaattctataggtggaacaacaatatg
aactaaccagtacccgggagctcttgtctttagctgcatatgtatcaaaa
gatggcctagtcagtcatcactgcaaagagaggcccattggacttgcaaa
ctttatatgccccagtacaggggaacaccagggccaaaaaggggcagtgg
gtgggtagggggattgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5886305_5887224
seq2: B6Ng01-162I10.g_65_985

seq1  GAATTCTATTGCTGTAGCAAAACATGTTGACCAAAGTAACCTGGAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGCTGTAGCAAAACATGTTGACCAAAGTAACCTGGAAAGAA  50

seq1  AGAGTTTCTTCAACTAACTGCTTATAGGTTCATCATCTGGGGAAACTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCTTCAACTAACTGCTTATAGGTTCATCATCTGGGGAAACTAGG  100

seq1  CAAGAACCCAGTGCAGGAAACTGGAGGCAAGAACTGAGACAGGGGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCCAGTGCAGGAAACTGGAGGCAAGAACTGAGACAGGGGCCATG  150

seq1  GTGGAGTGCTGCTTGCTGTCTTGTTTATCCTACTTTTTTATAGCTCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTGCTGCTTGCTGTCTTGTTTATCCTACTTTTTTATAGCTCCCAG  200

seq1  AACTACCCAAAGTGAACATCTATGTAAGCATCAACAAAGAGAAGGCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCCAAAGTGAACATCTATGTAAGCATCAACAAAGAGAAGGCACCA  250

seq1  GAGACTTTCCAACAAGTCAATATGGGAGAGAAATTTTTTCAATTGCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTCCAACAAGTCAATATGGGAGAGAAATTTTTTCAATTGCAGTT  300

seq1  CCTGCTTCCAAAATGACTCCAGCTTGTACCAAGTTGACTTAAAATTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCCAAAATGACTCCAGCTTGTACCAAGTTGACTTAAAATTAGTT  350

seq1  AGCACACTGATATAATGATTTCTTTTCCAAAACAAAATACCTTATAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTGATATAATGATTTCTTTTCCAAAACAAAATACCTTATAATTG  400

seq1  CTATAAATATACTGCTGAAATGCTTTAAAGAAAAATGTCATACTTTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATATACTGCTGAAATGCTTTAAAGAAAAATGTCATACTTTTATG  450

seq1  TTTATTCCAGCTTCTAGGTTTTTAAGAATTTTAAATATACTGAGATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCAGCTTCTAGGTTTTTAAGAATTTTAAATATACTGAGATATTG  500

seq1  TCTAATTCATATACAAATCTGAAAAGTGGTTAGTAGTTTAAAAATAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCATATACAAATCTGAAAAGTGGTTAGTAGTTTAAAAATAATTT  550

seq1  CTTTTTTCTCCAAATTTTATTTTCAAAATAAAATTTTCTCTTAACCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTCCAAATTTTATTTTCAAAATAAAATTTTCTCTTAACCTAAA  600

seq1  AATAAAAACCAATTAATTTTCAATCAAAATATTCAAGTAGAGTATATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACCAATTAATTTTCAATCAAAATATTCAAGTAGAGTATATGAA  650

seq1  TATATATAATTTAAATTTCTGTAAATGAAATATAAATGTAGATCTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAATTTAAATTTCTGTAAATGAAATATAAATGTAGATCTGTATA  700

seq1  ACTAAAATTTAGAATAACTAAAAGAATTCTATAGGTGGAACAACAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTTAGAATAACTAAAAGAATTCTATAGGTGGAACAACAATATG  750

seq1  AACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCATATGTATCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCATATGTATCAAAA  800

seq1  GATGGCCTAGTCAGTCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCTAGTCAGTCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAA  850

seq1  CTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGCAGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGGCAGTGG  900

seq1  GTGGGTA-GGGGATTGGGGGG  920
      ||||||| |||||||||||||
seq2  GTGGGTAGGGGGATTGGGGGG  921