BAC Information

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BAC

Clone NameB6Ng01-162N21
Chromosome3 (Build37)X (Build37)
Map Location 41,059,427 - 41,060,07180,334,413 - 80,335,016
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N21.bB6Ng01-162N21.g
ACCDH955597DH955598
length979972
definitionDH955597|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N21, 5' end.DH955598|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,427 - 41,060,071)(80,334,413 - 80,335,016)
sequence
gaattctcagtctggtagactttacttttttgttatttcttgtaaattat
caatccttctttcaaatagtccattatgtttgcccttttaagttcatgat
ggatgctgtacaattaacattatcatggcaactgaaatgcagaagcaatg
ggtctgcacagtaattgcaataatacagtcatggcatttctcaagcatgg
aagcagaaaaaaaaatattatctgagcatgttatttttcttctctttaat
ctttacttaaatttatttttactattaaaatttttctttatgtgtccttc
ttaccggttggagcatcttctggatatatgcccaggagaggtattgcagg
atcctccggtggtactatgtccaattttctgaggaaccgccagactgatt
tccagagtggttgtacaagtttgcaatcccaccaacaatggaggagtgtt
cctctttctccacatcctcaccagcatctgctgtcacctgaattttttat
cttagccattctgactggtgtgagatggaatctcaggtttgttttgattt
gaatttccctgatgattaaggatgctgaatattttttcaggtgcttctca
gccattcggtattcctcaggtgagaattcttttttagctctgagccccat
tttttaatggggttatttgattttctggagtccaccttcttgagttcttt
atatatattggatattagtcccctatctgatttaggatacttaaagattt
tttccaaatctattggtagcctttttgtcttattgatggtgtcttttgcc
ttgcagaagatttgcaattttatgaagtcccatttgtcgattctcgatct
tacagcacaaggcattgctgttctattcaggaatttttcccctgtaccca
tatcttcgaggtttttccctactttctcctctatagagaggcccattggt
cgtgcaaactttatatgcctcagtacagg
gaattccaaggctattaacaattaaaagccttcaaaatctttatcagctt
tcactgccaaaaattatgccagtgcttatgaagtgaacttcaagaactta
gtaaaacattgtttattttttttacgatttgtttttttatttagttgttt
gtttatttttattagatattttatttatatacatttattttattttttaa
tttttatttatttatttttattaggtattttcttcatttacatttccaat
gctatcccaaaagtcccccatatcctcccccccactcccctacataacca
ctcccacttcttggccctggtgttcccctgtactgaggcatataaagttt
gcaagaccgatgggcctctctttccaatgatggccggctaggccatcttc
tgatacatatgcagctagagacatgagctctgggggtactggttaggtca
tattgttgttccacctatagggttgcagatccctttagctccctggttac
tttctctagctcctccattggaggccctgtgatccatccaatagctgact
gtgaacatccacttctgtgtttgctaggccccggcgtagcctcaaaagag
gcagctatatcagtgtcctttcagcaaaatcttgctagagtgtgcaatgg
tgtcagcatttggaggctgattatgggatggatccctgggtatggcagtc
tctagatggtccatcctttcatttcagctccaaactttgtctctgtaact
ccttccatgggtgttttgttcccaattctaagaagggtcaaagtgtccac
actttggtcttcgttcttcttgatttcatgtgttttgcaaattgtatctt
gtatcttggtattctaagtttctgggctaatagccacttatcagtgagta
aatatcatgtgagttcttttgtgattgggttacctcactcagatgatgcc
ctcaagttcatccatttgccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059427_41060071
seq2: B6Ng01-162N21.b_336_981 (reverse)

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAA  50
      ||||||||||||||| ||||||| ||| ||||||||||  ||||||||||
seq2  TATAGAGGAGAAAGTAGGGAAAAACCTCGAAGATATGGGTACAGGGGAAA  50

seq1  AATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGAC  100
      |||||||| |||||||||||||| ||||||||||||||| |||||| |||
seq2  AATTCCTGAATAGAACAGCAATGCCTTGTGCTGTAAGATCGAGAATCGAC  100

seq1  AAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGT  150
      ||||||||| |||| ||| |||||| |||||||||||||||||||||| |
seq2  AAATGGGACTTCATAAAATTGCAAATCTTCTGCAAGGCAAAAGACACCAT  150

seq1  CAATAAGACAAAAAGGC-ACCAACAGATTGGGAAAGGATCTTTACCTATC  199
      ||||||||||||||||| ||||| ||||| |||||  |||||||  ||||
seq2  CAATAAGACAAAAAGGCTACCAATAGATTTGGAAAAAATCTTTAAGTATC  200

seq1  CTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAG  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAG  250

seq1  GTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCT  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCT  300

seq1  AAACAAAGAATTATCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGA  349
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAA-AAAGAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGA  349

seq1  AAAAATGCTCAGCATCC-TAATCATCAAAGATATGCAAATCAAAACAACC  398
      ||||||  ||||||||| |||||||||  || || ||||||||||||| |
seq2  AAAAATATTCAGCATCCTTAATCATCAGGGAAATTCAAATCAAAACAAAC  399

seq1  CTGAGATTCAATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG  448
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  CTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGG  449

seq1  TGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACCTCTTCATT  498
      |||||||||||||||| ||||||||||||||||||||||||  || ||||
seq2  TGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATT  499

seq1  TTTGTTGGGATTGCAAGCTTATACAACCACTCTGGAAATCAGTCTGGCGG  548
       ||| ||||||||||| ||| |||||||||||||||||||||||||||||
seq2  GTTGGTGGGATTGCAAACTTGTACAACCACTCTGGAAATCAGTCTGGCGG  549

seq1  TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCT  598
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  TTCCTCAGAAAATTGGACATAGTACCACCGGAGGATCCTGCAATACCTCT  599

seq1  CCTGGGTATATATTCAGAAGATGTCCCAACCGGTAAGAAGGACACAT  645
      |||||| |||||| |||||||||  ||||||||||||||||||||||
seq2  CCTGGGCATATATCCAGAAGATGCTCCAACCGGTAAGAAGGACACAT  646

seq1: chrX_80334413_80335016
seq2: B6Ng01-162N21.g_69_672

seq1  GAATTCCAAGGCTATTAACAATTAAAAGCCTTCAAAATCTTTATCAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGCTATTAACAATTAAAAGCCTTCAAAATCTTTATCAGCTT  50

seq1  TCACTGCCAAAAATTATGCCAGTGCTTATGAAGTGAACTTCAAGAACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCAAAAATTATGCCAGTGCTTATGAAGTGAACTTCAAGAACTTA  100

seq1  GTAAAACATTGTTTATTTTTTTTACGATTTGTTTTTTTATTTAGTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACATTGTTTATTTTTTTTACGATTTGTTTTTTTATTTAGTTGTTT  150

seq1  GTTTATTTTTATTAGATATTTTATTTATATACATTTATTTTATTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTTATTAGATATTTTATTTATATACATTTATTTTATTTTTTAA  200

seq1  TTTTTATTTATTTATTTTTATTAGGTATTTTCTTCATTTACATTTCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTATTTATTTTTATTAGGTATTTTCTTCATTTACATTTCCAAT  250

seq1  GCTATCCCAAAAGTCCCCCATATCCTCCCCCCCACTCCCCTACATAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCCAAAAGTCCCCCATATCCTCCCCCCCACTCCCCTACATAACCA  300

seq1  CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTT  350

seq1  GCAAGACCGATGGGCCTCTCTTTCCAATGATGGCCGGCTAGGCCATCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACCGATGGGCCTCTCTTTCCAATGATGGCCGGCTAGGCCATCTTC  400

seq1  TGATACATATGCAGCTAGAGACATGAGCTCTGGGGGTACTGGTTAGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATATGCAGCTAGAGACATGAGCTCTGGGGGTACTGGTTAGGTCA  450

seq1  TATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCCTGGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCCTGGTTAC  500

seq1  TTTCTCTAGCTCCTCCATTGGAGGCCCTGTGATCCATCCAATAGCTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGCTCCTCCATTGGAGGCCCTGTGATCCATCCAATAGCTGACT  550

seq1  GTGAACATCCACTTCTGTGTTTGCTAGGCCCCGGCGTAGCCTCAAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATCCACTTCTGTGTTTGCTAGGCCCCGGCGTAGCCTCAAAAGAG  600

seq1  GCAG  604
      ||||
seq2  GCAG  604