BAC Information

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BAC

Clone NameB6Ng01-164B10
Chromosome3 (Build37)
Map Location 125,602,369 - 125,809,615
singlet/doubletdoublet
Overlap geneUgt8a
Upstream geneLOC668820, Ndst4
Downstream geneArsj, Camk2d, Ank2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164B10.bB6Ng01-164B10.g
ACCDH956509DH956510
length1,1911,116
definitionDH956509|Mus musculus domesticus DNA, BAC clone: B6Ng01-164B10, 5' end.DH956510|Mus musculus domesticus DNA, BAC clone: B6Ng01-164B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,808,406 - 125,809,615)(125,602,369 - 125,603,477)
sequence
gaattcccagagattctcttgtcttggcctcaccatcactgcattctatt
tatgaagtcattgaaagtgcaaatatttgatagttctactccccactctc
catcaaatcaatggcctctttttttcattgttactgcattcatatatgtc
tatctacatagatatgttcttaatataacctgttgagtttgttatatata
tgagtaattgacacaattggtgtgtttctgggtaggacaacctctctgtt
ctcacctttactaagttgcctatagtttttgcgtagggttgtaatcttgt
gagtctttattctgtccaatttggcatgtgcattggttattaaagaagaa
tatgtgagcgctaatcaactaagcccacctataagttttttcagtgtttt
ctggaggattcttggctttgggtttggtgaacactagtagtctgctaaga
aaatattttaaaggtcttatctgaaagtataaaggatattcagtaggcac
tgaatgactaagggcgctaaagaaagctcaaggtgacttacctttctgta
gctgtaacatttcaactctgcaaagttctaaccaatgggagttacagagt
cttcacattagtatatgttactttgggggaaatgtggttatagtctccat
tcttaggtctgagtgaaataagaaacagaaggcaactgagtaaatagaat
cttactctagcccttgttagactgctatgtgtgtatgtcttcagttatca
aattattttatcacagatgaatagaacaggagagaaaaatgatacttcta
tgaatattattttccaatgtcctcacaatgtatctgatttcaaatgcaaa
tatcatttcactaaattctagaagaactatcaacatgtgtagaaaaatct
ggttaccatagagatgactgtgatttttttctactagctgtcactttcta
taaattgacctcattacatttttttattttaaattctagtacctgattaa
ataattataacttcaggctaaagtgattacaattttaaaattgatataag
ttttttttatggctgtcatctctcctctactaaatgcattgaactaaaaa
tgacaaggaaactcaaactggaggtgcattcatgaattcagacactaggc
ttgctgtaggctcaacaaaattaagatacaggaaaacatct
gaattccattagatgacaatttttaaagtgtttaaatttattcctaagca
gatctagtgtaatgaaccatattatttatattcaaacatcattattgctt
tgaaaaataagagcaggtgtttggggcattcagctgaaagagggaaaagg
ccacatatgtgctagtacagaagtgagttcttttatctctacctttcttc
tttgtaatggttaccacatctcagctgttaaaaatagcatctttacagca
gcaagtggttccaaattacacatcacattaattactattctaaaaatgaa
aaaaatctcatagacaagctttttacttaaaactgagtataaataactac
aagaaaataaaatatgcatctgaaatttaccaaaataaaataaaattgta
aaaaatattgaagcatttccctatattctgaaatttagcttaaaagtaaa
aatgtgaatattttacaaaatcttattttaaaaggcctctatcatacaaa
gatgagatacaatttaatttttaaaaattaaatttcatgtgtttttctgt
gtgttagaattctcttttaagaagattgatctttatttttatttatttgt
agatctgtgtgtctttgtgagtatacagaatatgtgtacccttgaagacc
agaagacactgaagtcatgggctgttttactaagtgggcgctggaaatca
tttggagtagtactcatgcataaccgctgagatatctccagctcctcgaa
aactttgtttaagatgacatttcaagaaaaactcatgaacactcctttgt
gttatacaaatataaaaattttttccttgattactcctttgtcacatctc
taattcggtactttgttctgcatctctgggtttgtgaaactactaggtag
tagttcttaaccttcctactgctgcaaccttttaatacagttcctcatgt
tgtgatgacccccaatcataaaatattttgttgttacttcataacgtaat
tgttgcaactgataaggagcatgatgtggatattctgatattgcaggaag
ccaccaagcctgggagcagtataactaagggattcttttagctgtgtgat
cttctttaattgcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125808406_125809615
seq2: B6Ng01-164B10.b_45_1235 (reverse)

seq1  AGATGTTTTCCTGGTTACTTAATTTTGTTGTAGCCTACAGCAAGCCTGAT  50
      |||||||||||| ||  ||||||||||||| ||||||||||||||||  |
seq2  AGATGTTTTCCT-GTATCTTAATTTTGTTG-AGCCTACAGCAAGCCTAGT  48

seq1  G-CTGGATTCATGAATGCAACCTCAGATTTGGAGTTTCCTTGCTCATTTT  99
      | ||| ||||||||||||| |  |||  || ||||||||||| |||||||
seq2  GTCTGAATTCATGAATGCACCTCCAG--TTTGAGTTTCCTTG-TCATTTT  95

seq1  CTAGTTCAAATGCATTTAGTAAGAGGAGAGAATGACAGCCAATTAAAAAA  149
       |||||| |||||||||||| ||||||||| ||||||||||  |||||||
seq2  -TAGTTC-AATGCATTTAGT-AGAGGAGAG-ATGACAGCCA--TAAAAAA  139

seq1  AAACTATAATCAATTTTTAAAATTGTAATCACTTTTAGCCTGGAGTTATA  199
      ||  ||| ||||| |||||||||||||||||| ||||||||| |||||| 
seq2  AACTTAT-ATCAA-TTTTAAAATTGTAATCAC-TTTAGCCTGAAGTTAT-  185

seq1  AATTATTTAATCAGGTAACTAGAATTTTAAAATAAAAAAAATGTAATGAG  249
      |||||||||||||||| ||||||| |||||||| ||||||||||||||||
seq2  AATTATTTAATCAGGT-ACTAGAA-TTTAAAAT-AAAAAAATGTAATGAG  232

seq1  GTCAATTTATAGAAAGGTGACAGCTAGTAGAAAAAAAATCACAGTCATCT  299
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  GTCAATTTATAGAAA-GTGACAGCTAGTAG-AAAAAAATCACAGTCATCT  280

seq1  CTATGGTAACCAGATTTTTCTACACATGTTGATAGTTCTTCTAGAATTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTAACCAGATTTTTCTACACATGTTGATAGTTCTTCTAGAATTTA  330

seq1  GTGAAATGATATTTGCATTTGAAATCAGATACATTGTGAGGACATTGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGATATTTGCATTTGAAATCAGATACATTGTGAGGACATTGGAA  380

seq1  AATAATATTCATAGAAGTATCATTTTTCTCTCCTGTTCTATTCATCTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTCATAGAAGTATCATTTTTCTCTCCTGTTCTATTCATCTGTG  430

seq1  ATAAAATAATTTGATAACTGAAGACATACACACATAGCAGTCTAACAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATTTGATAACTGAAGACATACACACATAGCAGTCTAACAAGG  480

seq1  GCTAGAGTAAGATTCTATTTACTCAGTTGCCTTCTGTTTCTTATTTCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTAAGATTCTATTTACTCAGTTGCCTTCTGTTTCTTATTTCACT  530

seq1  CAGACCTAAGAATGGAGACTATAACCACATTTCCCCCAAAGTAACATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTAAGAATGGAGACTATAACCACATTTCCCCCAAAGTAACATATA  580

seq1  CTAATGTGAAGACTCTGTAACTCCCATTGGTTAGAACTTTGCAGAGTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTGAAGACTCTGTAACTCCCATTGGTTAGAACTTTGCAGAGTTGA  630

seq1  AATGTTACAGCTACAGAAAGGTAAGTCACCTTGAGCTTTCTTTAGCGCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACAGCTACAGAAAGGTAAGTCACCTTGAGCTTTCTTTAGCGCCC  680

seq1  TTAGTCATTCAGTGCCTACTGAATATCCTTTATACTTTCAGATAAGACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATTCAGTGCCTACTGAATATCCTTTATACTTTCAGATAAGACCT  730

seq1  TTAAAATATTTTCTTAGCAGACTACTAGTGTTCACCAAACCCAAAGCCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATTTTCTTAGCAGACTACTAGTGTTCACCAAACCCAAAGCCAA  780

seq1  GAATCCTCCAGAAAACACTGAAAAAACTTATAGGTGGGCTTAGTTGATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTCCAGAAAACACTGAAAAAACTTATAGGTGGGCTTAGTTGATTA  830

seq1  GCGCTCACATATTCTTCTTTAATAACCAATGCACATGCCAAATTGGACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCACATATTCTTCTTTAATAACCAATGCACATGCCAAATTGGACAG  880

seq1  AATAAAGACTCACAAGATTACAACCCTACGCAAAAACTATAGGCAACTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGACTCACAAGATTACAACCCTACGCAAAAACTATAGGCAACTTA  930

seq1  GTAAAGGTGAGAACAGAGAGGTTGTCCTACCCAGAAACACACCAATTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTGAGAACAGAGAGGTTGTCCTACCCAGAAACACACCAATTGTG  980

seq1  TCAATTACTCATATATATAACAAACTCAACAGGTTATATTAAGAACATAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACTCATATATATAACAAACTCAACAGGTTATATTAAGAACATAT  1030

seq1  CTATGTAGATAGACATATATGAATGCAGTAACAATGAAAAAAAGAGGCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGATAGACATATATGAATGCAGTAACAATGAAAAAAAGAGGCCA  1080

seq1  TTGATTTGATGGAGAGTGGGGAGTAGAACTATCAAATATTTGCACTTTCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGATGGAGAGTGGGGAGTAGAACTATCAAATATTTGCACTTTCA  1130

seq1  ATGACTTCATAAATAGAATGCAGTGATGGTGAGGCCAAGACAAGAGAATC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCATAAATAGAATGCAGTGATGGTGAGGCCAAGACAAGAGAATC  1180

seq1  TCTGGGAATTC  1210
      |||||||||||
seq2  TCTGGGAATTC  1191

seq1: chr3_125602369_125603477
seq2: B6Ng01-164B10.g_70_1185

seq1  GAATTCCATTAGATGACAATTTTTAAAGTGTTTAAATTTATTCCTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAGATGACAATTTTTAAAGTGTTTAAATTTATTCCTAAGCA  50

seq1  GATCTAGTGTAATGAACCATATTATTTATATTCAAACATCATTATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGTGTAATGAACCATATTATTTATATTCAAACATCATTATTGCTT  100

seq1  TGAAAAATAAGAGCAGGTGTTTGGGGCATTCAGCTGAAAGAGGGAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATAAGAGCAGGTGTTTGGGGCATTCAGCTGAAAGAGGGAAAAGG  150

seq1  CCACATATGTGCTAGTACAGAAGTGAGTTCTTTTATCTCTACCTTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATGTGCTAGTACAGAAGTGAGTTCTTTTATCTCTACCTTTCTTC  200

seq1  TTTGTAATGGTTACCACATCTCAGCTGTTAAAAATAGCATCTTTACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATGGTTACCACATCTCAGCTGTTAAAAATAGCATCTTTACAGCA  250

seq1  GCAAGTGGTTCCAAATTACACATCACATTAATTACTATTCTAAAAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGGTTCCAAATTACACATCACATTAATTACTATTCTAAAAATGAA  300

seq1  AAAAATCTCATAGACAAGCTTTTTACTTAAAACTGAGTATAAATAACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTCATAGACAAGCTTTTTACTTAAAACTGAGTATAAATAACTAC  350

seq1  AAGAAAATAAAATATGCATCTGAAATTTACCAAAATAAAATAAAATTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAAAATATGCATCTGAAATTTACCAAAATAAAATAAAATTGTA  400

seq1  AAAAATATTGAAGCATTTCCCTATATTCTGAAATTTAGCTTAAAAGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTGAAGCATTTCCCTATATTCTGAAATTTAGCTTAAAAGTAAA  450

seq1  AATGTGAATATTTTACAAAATCTTATTTTAAAAGGCCTCTATCATACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAATATTTTACAAAATCTTATTTTAAAAGGCCTCTATCATACAAA  500

seq1  GATGAGATACAATTTAATTTTTAAAAATTAAATTTCATGTGTTTTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATACAATTTAATTTTTAAAAATTAAATTTCATGTGTTTTTCTGT  550

seq1  GTGTTAGAATTCTCTTTTAAGAAGATTGATCTTTATTTTTATTTATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAATTCTCTTTTAAGAAGATTGATCTTTATTTTTATTTATTTGT  600

seq1  AGATCTGTGTGTCTTTGTGAGTATACAGAATATGTGTACCCTTGAAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTGTGTCTTTGTGAGTATACAGAATATGTGTACCCTTGAAGACC  650

seq1  AGAAGACACTGAAGTCATGGGCTGTTTTACTAAGTGGGCGCTGGAAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACACTGAAGTCATGGGCTGTTTTACTAAGTGGGCGCTGGAAATCA  700

seq1  TTTGGAGTAGTACTCATGCATAACCGCTGAGATATCTCCAGCTCCTCGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTAGTACTCATGCATAACCGCTGAGATATCTCCAGCTCCTCGAA  750

seq1  AACTTTGTTTAAGATGACATTTCAAGAAAAACTCATGAACACTCCTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTTTAAGATGACATTTCAAGAAAAACTCATGAACACTCCTTTGT  800

seq1  GTTATACAAATATAAAAA-TTTTTCCTTGATTACTCCTTTGTCACATCTC  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTATACAAATATAAAAATTTTTTCCTTGATTACTCCTTTGTCACATCTC  850

seq1  TAATTCGGTACTTTGTTCTGCATCTCTGGGTTTGTGAAACTACTAGGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCGGTACTTTGTTCTGCATCTCTGGGTTTGTGAAACTACTAGGTAG  900

seq1  TAGTTCTTAACCTTCCTACTGCTGCAACCTTTTAATACAGTTCCTCATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTAACCTTCCTACTGCTGCAACCTTTTAATACAGTTCCTCATGT  950

seq1  TGTGATGACCCCCAATCATAAAATATTTTGTTGTTACTTCATAAACGTAA  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGATGACCCCCAATCATAAAATATTTTGTTGTTACTTCAT-AACGTAA  999

seq1  TTGTGGC-ACTGATAAGGAGCATGATGTAGATA-TCTGATA-TGCAGGAA  1046
      |||| || |||||||||||||||||||| |||| ||||||| ||||||||
seq2  TTGTTGCAACTGATAAGGAGCATGATGTGGATATTCTGATATTGCAGGAA  1049

seq1  GCCCACAGGCTGAGAAGCAGTAT-ACT-AGGGATTC-TTTAGCTGT-TGA  1092
      |||  || ||   | |||||||| ||| |||||||| ||||||||| |||
seq2  GCCACCAAGCCTGGGAGCAGTATAACTAAGGGATTCTTTTAGCTGTGTGA  1099

seq1  TCTTCTTTAATTGCATG  1109
      |||||||||||||||||
seq2  TCTTCTTTAATTGCATG  1116