BAC Information

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BAC

Clone NameB6Ng01-164O21
Chromosome3 (Build37)
Map Location 119,878,888 - 120,088,530
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164O21.bB6Ng01-164O21.g
ACCDH957127DH957128
length1,091992
definitionDH957127|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O21, 5' end.DH957128|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,878,888 - 119,879,991)(120,087,218 - 120,088,530)
sequence
gaattctttctgcacccttgcctgtcatcattttgcagtttcagctgctc
aactccgagctggaagaggctgtctgagcttctgctccatgtactggtag
tacctccaaacacttgaggcctgatactggcagaatgagagccagtcatt
tcttgacatttagtactcagaaagcggtgtcaatttgcttttacatgaca
aagtaggatacatttgttctttttcaaaagtccatcttgtttggtagcaa
aatgattgacactttttaattatgcaaattggcaattttatacctctgta
tacatgaaactctagcaggtcaagcctggattttatatttcattttatat
atactctttacatggcctagaactctctaagggctacttttatcacacaa
agagaggcagccctttcttgtatgtggccccaactcctattccaataaag
atcaaatgttaacaatgaacttaacagaaacataaggaacatcttgcatt
gttttcttatatattatgttgcatcttatatacataatattgtataaaat
attatattgtatattatgttttctaacatgaaatggaaatggaaattccc
tctggtaattttttcttgaaacaaattgtattgggtgaatcagaatcaaa
atttaagggttttgggggaagcaggcatgagaaattaggtcagggtacag
ttgctgtaaattgtgggagaaaaatatcttgattgctcagctcacgtttg
ggctgtaaatctcttgctagcttcttagcctgcctgtgatgtggtgtgtc
ctggcaggtggttcaccacagggactcatctaggaacattcaattgcaca
gagggctactaatccctgggggctaatggtactgattgaagtgattgtct
taccttactcactgtgatggggaacactgggacccagaccagctcacagg
atggagatgggacaggaggtctgtcactaaccttgagctcaaggccatgc
aaaagaactaaataacgctgcagctaagcgagaaaggcttactgaatcta
tcttaatgctaagaacaccacccacgcatgagaaagctttc
gaattcaggattgactatattcattcataagacacagaaatttaatccca
gactccagtctatgggttgacagtggaaatcaactgtttccaactaacca
tgtgatgattctaaagcatggctcttaggggcaacattaattttcttatt
tgtagctgtctgaggagaatactaacttattattttaagttgttaataaa
ataatacaatggagacagtttttaattaaatggactcacaacaaatttgc
ttcttttaagcaaaactatagaagcttgaacatgagtaaatattttaaaa
tttcacacaatagcatgataatatgtgttcttaacattatattgttattt
gtctagtatggaacactgaatgcttaaaactcctttttaacataatgaaa
cttaatctcattcataacagcttcaacagtgtgacatagctatgcttgtg
tttggaaattatagaaacatttggttacatagaatctttgttctcactat
caattggatgtggactctgtagataagaatgataatgtgatctgatatat
aggatgccattctttaatacaacataatcaaaagttttatactatcatta
aggacagagaacattatgatccaatcattccttattcccctaatttgcct
cttctttttcttataataaccttctaagctcattttctccctcattataa
atgagatgtgatattttctcaaggttgtcatgaataacactttcagagat
taagacgcttcataggcaggaatttcacattacagattttagtctgaatc
tgtcccctttgtacctctgtctctttctatctattggtctctcaagttca
ccatgccagtcataggcttatcacttggtagctggctaaacaattgctct
attttggaattttcagccttaattatcagtattagaattaatagttttgc
ttcactgaccaaattcctcccttcttttcctcctttcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119878888_119879991
seq2: B6Ng01-164O21.b_47_1137

seq1  GAATTCTTTCTGCACCCTTGCCTGTCATCATTTTGCAGTTTCAGCTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGCACCCTTGCCTGTCATCATTTTGCAGTTTCAGCTGCTC  50

seq1  AACTCCGAGCTGGAAGAGGCTGTCTGAGCTTCTGCTCCATGTACTGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCGAGCTGGAAGAGGCTGTCTGAGCTTCTGCTCCATGTACTGGTAG  100

seq1  TACCTCCAAACACTTGAGGCCTGATACTGGCAGAATGAGAGCCAGTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCAAACACTTGAGGCCTGATACTGGCAGAATGAGAGCCAGTCATT  150

seq1  TCTTGACATTTAGTACTCAGAAAGCGGTGTCAATTTGCTTTTACATGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACATTTAGTACTCAGAAAGCGGTGTCAATTTGCTTTTACATGACA  200

seq1  AAGTAGGATACATTTGTTCTTTTTCAAAAGTCCATCTTGTTTGGTAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGATACATTTGTTCTTTTTCAAAAGTCCATCTTGTTTGGTAGCAA  250

seq1  AATGATTGACACTTTTTAATTATGCAAATTGGCAATTTTATACCTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGACACTTTTTAATTATGCAAATTGGCAATTTTATACCTCTGTA  300

seq1  TACATGAAACTCTAGCAGGTCAAGCCTGGATTTTATATTTCATTTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAACTCTAGCAGGTCAAGCCTGGATTTTATATTTCATTTTATAT  350

seq1  ATACTCTTTACATGGCCTAGAACTCTCTAAGGGCTACTTTTATCACACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTTACATGGCCTAGAACTCTCTAAGGGCTACTTTTATCACACAA  400

seq1  AGAGAGGCAGCCCTTTCTTGTATGTGGCCCCAACTCCTATTCCAATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCAGCCCTTTCTTGTATGTGGCCCCAACTCCTATTCCAATAAAG  450

seq1  ATCAAATGTTAACAATGAACTTAACAGAAACATAAGGAACATCTTGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTTAACAATGAACTTAACAGAAACATAAGGAACATCTTGCATT  500

seq1  GTTTTCTTATATATTATGTTGCATCTTATATACATAATATTGTATAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTATATATTATGTTGCATCTTATATACATAATATTGTATAAAAT  550

seq1  ATTATATTGTATATTATGTTTTCTAACATGAAATGGAAATGGAAATTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTGTATATTATGTTTTCTAACATGAAATGGAAATGGAAATTCCC  600

seq1  TCTGGTAATTTTTTCTTGAAACAAATTGTATTGGGTGAATCAGAATCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAATTTTTTCTTGAAACAAATTGTATTGGGTGAATCAGAATCAAA  650

seq1  ATTTAAGGGTTTTGGGGGAAGCAGGCATGAGAAATTAGGTCAGGGTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGGTTTTGGGGGAAGCAGGCATGAGAAATTAGGTCAGGGTACAG  700

seq1  TTGCTGTAAATTGTGGGAGAAAAATATCTTGATTGCTCAGCTCAGGTTTG  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGCTGTAAATTGTGGGAGAAAAATATCTTGATTGCTCAGCTCACGTTTG  750

seq1  GGCTGTAAATCTCTTGCTAGCTTCTTAGCCTGCCTGTGATGTGGTGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAAATCTCTTGCTAGCTTCTTAGCCTGCCTGTGATGTGGTGTGTC  800

seq1  CTGGCAGGTGGTTCACCACAGGGACTCATCTAGGAACATTCAATTGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGTGGTTCACCACAGGGACTCATCTAGGAACATTCAATTGCACA  850

seq1  GAGGGCTACTAATCCCTGGGGGCTAATGGTACTGATTGAAGTGATTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTACTAATCCCTGGGGGCTAATGGTACTGATTGAAGTGATTGTCT  900

seq1  TACCTTACTCACTGTGATGGGGAACACTGGGACCCAAGACCAGCTCAACA  950
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TACCTTACTCACTGTGATGGGGAACACTGGGACCC-AGACCAGCTC-ACA  948

seq1  GGATGGAGATGGGACAGGAGGTCTTGTCACTAACCTTGAGCTCCAGAGGC  1000
      ||||||||||||||||||||||| |||||||||||||||||||   ||||
seq2  GGATGGAGATGGGACAGGAGGTC-TGTCACTAACCTTGAGCTC--AAGGC  995

seq1  CATGCAAAAGAACTAAATAAAGGCTGCAGCTAAAAGCGAGAAGGGGCTAC  1050
      |||||||||||||||||| || |||||||||  ||||||||| ||  |||
seq2  CATGCAAAAGAACTAAAT-AACGCTGCAGCT--AAGCGAGAAAGGCTTAC  1042

seq1  TGAACCCATCCTTAAATGCTAAAGAACAACCACCCACGCATGAGGAAAGC  1100
      |||| | |||  | |||||| |||||| ||||||||||||||| ||||||
seq2  TGAATCTATC--TTAATGCT-AAGAAC-ACCACCCACGCATGA-GAAAGC  1087

seq1  TTTC  1104
      ||||
seq2  TTTC  1091

seq1: chr3_120087218_120088530
seq2: B6Ng01-164O21.g_67_1053 (reverse)

seq1  GAAAGGAGGAAAGAAAGAAAGAGAAGAAAAGAAAGAAAGAAAGAAAAAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGAGAAGAAAGAAAGAAAGAAAAAAGAAAGAGAAGAAAGAAAGGAGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGAAAGAAAGAGAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGAAAGAAAGAAAGAGAGAGAAAGAAAGAAGAAAGAGTGAGAGATAGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAGAGAAAGAAAGAAGAAAGAGAGAGGGGGAGGGAGGGAGGGAGGAAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGGGAGGGAGGAAGGAATGGAGGAAGGAAGGAAGGAAGGAAGGAAGGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAAGGAAGGAAGGAAGGAAAAAAGGAAAGAAGAAAAGAAGGAAGAAAT  350
                               | || || |||||||||| || |||
seq2  -------------------------GAAAGGAGGAAAAGAAGGGAGGAAT  25

seq1  TATGGTCAGTGAAGCAAAACTATTATATCTAATACTGATAATTAAGGCTG  400
      | |||||||||||||||||||||||  |||||||||||||||||||||||
seq2  T-TGGTCAGTGAAGCAAAACTATTAATTCTAATACTGATAATTAAGGCTG  74

seq1  AAAATTCCAAAATAGAGCAATTGTTTAGCCAGCTACCAAGTGATAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCAAAATAGAGCAATTGTTTAGCCAGCTACCAAGTGATAAGCCT  124

seq1  ATGACTGGCATGGTGAACTTGAGAGACCAATAGATAGAAAGAGACAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGCATGGTGAACTTGAGAGACCAATAGATAGAAAGAGACAGAGG  174

seq1  TACAAAGGGGACAGATTCAGACTAAAATCTGTAATGTGAAATTCCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGGGACAGATTCAGACTAAAATCTGTAATGTGAAATTCCTGCCT  224

seq1  ATGAAGCGTCTTAATCTCTGAAAGTGTTATTCATGACAACCTTGAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCGTCTTAATCTCTGAAAGTGTTATTCATGACAACCTTGAGAAAA  274

seq1  TATCACATCTCATTTATAATGAGGGAGAAAATGAGCTTAGAAGGTTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATCTCATTTATAATGAGGGAGAAAATGAGCTTAGAAGGTTATTA  324

seq1  TAAGAAAAAGAAGAGGCAAATTAGGGGAATAAGGAATGATTGGATCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAGAAGAGGCAAATTAGGGGAATAAGGAATGATTGGATCATAA  374

seq1  TGTTCTCTGTCCTTAATGATAGTATAAAACTTTTGATTATGTTGTATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGTCCTTAATGATAGTATAAAACTTTTGATTATGTTGTATTAA  424

seq1  AGAATGGCATCCTATATATCAGATCACATTATCATTCTTATCTACAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCATCCTATATATCAGATCACATTATCATTCTTATCTACAGAGT  474

seq1  CCACATCCAATTGATAGTGAGAACAAAGATTCTATGTAACCAAATGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCAATTGATAGTGAGAACAAAGATTCTATGTAACCAAATGTTTC  524

seq1  TATAATTTCCAAACACAAGCATAGCTATGTCACACTGTTGAAGCTGTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTCCAAACACAAGCATAGCTATGTCACACTGTTGAAGCTGTTAT  574

seq1  GAATGAGATTAAGTTTCATTATGTTAAAAAGGAGTTTTAAGCATTCAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGATTAAGTTTCATTATGTTAAAAAGGAGTTTTAAGCATTCAGTG  624

seq1  TTCCATACTAGACAAATAACAATATAATGTTAAGAACACATATTATCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATACTAGACAAATAACAATATAATGTTAAGAACACATATTATCATG  674

seq1  CTATTGTGTGAAATTTTAAAATATTTACTCATGTTCAAGCTTCTATAGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTGTGAAATTTTAAAATATTTACTCATGTTCAAGCTTCTATAGTT  724

seq1  TTGCTTAAAAGAAGCAAATTTGTTGTGAGTCCATTTAATTAAAAACTGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAAAAGAAGCAAATTTGTTGTGAGTCCATTTAATTAAAAACTGTC  774

seq1  TCCATTGTATTATTTTATTAACAACTTAAAATAATAAGTTAGTATTCTCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTATTATTTTATTAACAACTTAAAATAATAAGTTAGTATTCTCC  824

seq1  TCAGACAGCTACAAATAAGAAAATTAATGTTGCCCCTAAGAGCCATGCTT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGCTACAAATAAGAAAATTAATGTTGCCCCTAAGAGCCATGCTT  874

seq1  TAGAATCATCACATGGTTAGTTGGAAACAGTTGATTTCCACTGTCAACCC  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCATCACATGGTTAGTTGGAAACAGTTGATTTCCACTGTCAACCC  924

seq1  ATAGACTGGAGTCTGGGATTAAATTTCTGTGTCTTATGAATGAATATAGT  1300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGGAGTCTGGGATTAAATTTCTGTGTCTTATGAATGAATATAGT  974

seq1  CAATCCTGAATTC  1313
      |||||||||||||
seq2  CAATCCTGAATTC  987