BAC Information

Click to search

BAC

Clone NameB6Ng01-165A15
Chromosome3 (Build37)
Map Location 100,730,541 - 100,882,759
singlet/doubletdoublet
Overlap geneTrim45, Ttf2, Igsf2, Ptgfrn
Upstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1
Downstream geneLOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165A15.bB6Ng01-165A15.g
ACCDH957204DH957205
length4641,153
definitionDH957204|Mus musculus domesticus DNA, BAC clone: B6Ng01-165A15, 5' end.DH957205|Mus musculus domesticus DNA, BAC clone: B6Ng01-165A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,730,541 - 100,731,010)(100,881,607 - 100,882,759)
sequence
ctaattctttgggagtcacagatcactctgagactcttctttcccagaag
tagccactaagttgggcacagtgtttcgggagtttcctaacaccctcccc
ccaccctcatcccccagtgtacctctgtacaacacctggtagttcacaaa
ctaggcttgagaaacccagctttgtcttcatgctggcccataggctatgg
caccctggcgttagcttctgagtggcagaggttctcacaacagggaagtt
gcaagctggacttcagtatctttcacctcttctaggaggacccagggctt
atagaagatagttttgagggtccagtctcatacaagcctaaaggctgtct
ttgggttttgcagttgccttgaggctgaagttaagatgcagagttctatg
tgatcccagagcagctgttgctgagccacttagcccaggcctgggggagg
ggagggggaaggtg
gaattcagtggtagagtgatcacctctatatgcatggtcctagttgactt
gtagagccggggacgaagaaatcctgacttttgaaaagatttcccataag
acacttttgcactgagttaaacagtacaacggacacccccctttcaggtc
agatacactctagtgatttattgtgagaaggcaaaggatgacacaagagt
ccccagccctccccccatctcctggcttcttgactagtctttgagggcca
gagaagcagggaagcttttcttggctcaggagagcaggatgcatgagaga
ggctggctggctgcccaggtggagactctggcaggagctagaggtggtcc
agcatctgtctggccttcaccttcatggttcttaaatctgtccatccttt
tctcctcagtgaggagctggccttgagaatgaagccatgctagctgtcct
cacatactgaggtgtgtcctagaagggccactatattcattttgtagaag
agatgggcccatgggaggtggtgttctagaggagaaccggtttctgttat
ctggagtaacccctttctgagtgtgtgatcaaggaaaccgccaaggagac
gatggattgtgatgcttgaaggtccacatatgtagctcctgataaacttg
gcagattttcccagcctttggtagacagcctgactaccagatcaccagta
tctgtcaccgtccattctgagcccacccctttcctagactgttgaagtgg
tggctttttccagaaagtgctaagagtttagaagcagaacccccagtaat
tcttgtccccttcctgtgctgtggctatgctctacccaggacgtgagcca
caggcacctcctgccatccatcgtctcatgagccacaggcaccttctgcc
atccatcgtctctccctggggatcttgactcttggcagctcccgtgtctc
taaattgcagcttccctcctccagctccgtgttctcaaccagaggattgc
ttggcatcatacatgggcactgactcggcactgctgggctcccctattga
ctcttgaagtgagtacaggcataatccctttctatgaaaacgaagggaca
gtaaggcacatatacgtctctcctgtgtacgagagcccccctcaacccat
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_100730541_100731010
seq2: B6Ng01-165A15.b_47_516

seq1  GAATTCCTAATTCTTTGGGAGTCACAGATCACTCTGAGACTCTTCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATTCTTTGGGAGTCACAGATCACTCTGAGACTCTTCTTTCC  50

seq1  CAGAAGTAGCCACTAAGTTGGGCACAGTGTTTCGGGAGTTTCCTAACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAGCCACTAAGTTGGGCACAGTGTTTCGGGAGTTTCCTAACACC  100

seq1  CTCCCCCCACCCTCATCCCCCAGTGTACCTCTGTACAACACCTGGTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCACCCTCATCCCCCAGTGTACCTCTGTACAACACCTGGTAGTT  150

seq1  CACAAACTAGGCTTGAGAAACCCAGCTTTGTCTTCATGCTGGCCCATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTAGGCTTGAGAAACCCAGCTTTGTCTTCATGCTGGCCCATAGG  200

seq1  CTATGGCACCCTGGCGTTAGCTTCTGAGTGGCAGAGGTTCTCACAACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCACCCTGGCGTTAGCTTCTGAGTGGCAGAGGTTCTCACAACAGG  250

seq1  GAAGTTGCAAGCTGGACTTCAGTATCTTTCACCTCTTCTAGGAGGACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGCAAGCTGGACTTCAGTATCTTTCACCTCTTCTAGGAGGACCCA  300

seq1  GGGCTTATAGAAGATAGTTTTGAGGGTCCAGTCTCATACAAGCCTAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATAGAAGATAGTTTTGAGGGTCCAGTCTCATACAAGCCTAAAGG  350

seq1  CTGTCTTTGGGTTTTGCAGTTGCCTTGAGGCTGAAGTTAAGATGCAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTGGGTTTTGCAGTTGCCTTGAGGCTGAAGTTAAGATGCAGAGT  400

seq1  TCTATGTGATCCCAGAGCAGCTGTTGCTGAGCCACTTAGCCCAGGCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGATCCCAGAGCAGCTGTTGCTGAGCCACTTAGCCCAGGCCTGG  450

seq1  GGGAGGGGAGGGGGAAGGTG  470
      ||||||||||||||||||||
seq2  GGGAGGGGAGGGGGAAGGTG  470

seq1: chr3_100881607_100882759
seq2: B6Ng01-165A15.g_68_1220 (reverse)

seq1  AGAATGGGTTTGTGGGTGCTTCCGTCACCATGATGAG-CGTTATTGTGCC  49
      ||||||||||   ||| |||  |||   || || ||| |||   ||||||
seq2  AGAATGGGTTGAGGGGGGCTCTCGTACACAGGA-GAGACGTATATGTGCC  49

seq1  CT-CTGTGCC-TCAGTTTCCTAGAAAAGGGGATAATGACTGTACCCACTT  97
       | |||| || ||  |||| ||||||  ||||| ||| |||||| |||||
seq2  TTACTGTCCCTTCGTTTTCATAGAAA--GGGATTATGCCTGTACTCACTT  97

seq1  CATAGAGTCAATAGGGGAGCCCAGCAGGTGCCAGGTCAGTGCCCA-GTAT  146
      || ||||||||||||||||||||||| |||||  ||||||||||| ||||
seq2  CA-AGAGTCAATAGGGGAGCCCAGCA-GTGCCGAGTCAGTGCCCATGTAT  145

seq1  GACTGCCAAGCAATCCTCTGGTT-AGAACACGGAGCTGGAGGAGGGAGCC  195
      || |||||||||||||||||||| |||||||||||||||||||||||  |
seq2  GA-TGCCAAGCAATCCTCTGGTTGAGAACACGGAGCTGGAGGAGGGAAGC  194

seq1  TGCAATTTAGAGACACGGGAGCTGCCAAGAGTCAAGATCCCCAGGGAGAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTAGAGACACGGGAGCTGCCAAGAGTCAAGATCCCCAGGGAGAG  244

seq1  ACGATGGATGGCAGAAGGTGCCTGTGGCTCATGAGACGATGGATGGCAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGATGGCAGAAGGTGCCTGTGGCTCATGAGACGATGGATGGCAGG  294

seq1  AGGTGCCTGTGGCTCACGTCCTGGGTAGAGCATAGCCACAGCACAGGAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCTGTGGCTCACGTCCTGGGTAGAGCATAGCCACAGCACAGGAAG  344

seq1  GGGACAAGAATTACTGGGGGTTCTGCTTCT-AACTCTTAGCACCTTCTGG  394
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GGGACAAGAATTACTGGGGGTTCTGCTTCTAAACTCTTAGCACTTTCTGG  394

seq1  AAAAAGCCACCACTTCAACAGTCTAGGAAAGGGGTGGGCTCAGAATGGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCACCACTTCAACAGTCTAGGAAAGGGGTGGGCTCAGAATGGAC  444

seq1  GGTGACAGATACTGGTGATCTGGTAGTCAGGCTGTCTACCAAAGGCTGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGATACTGGTGATCTGGTAGTCAGGCTGTCTACCAAAGGCTGGG  494

seq1  AAAATCTGCCAAGTTTATCAGGAGCTACATATGTGGACCTTCAAGCATCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGCCAAGTTTATCAGGAGCTACATATGTGGACCTTCAAGCATCA  544

seq1  CAATCCATCGTCTCCTTGGCGGTTTCCTTGATCACACACTCAGAAAGGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCATCGTCTCCTTGGCGGTTTCCTTGATCACACACTCAGAAAGGGG  594

seq1  TTACTCCAGATAACAGAAACCGGTTCTCCTCTAGAACACCACCTCCCATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCAGATAACAGAAACCGGTTCTCCTCTAGAACACCACCTCCCATG  644

seq1  GGCCCATCTCTTCTACAAAATGAATATAGTGGCCCTTCTAGGACACACCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATCTCTTCTACAAAATGAATATAGTGGCCCTTCTAGGACACACCT  694

seq1  CAGTATGTGAGGACAGCTAGCATGGCTTCATTCTCAAGGCCAGCTCCTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTGAGGACAGCTAGCATGGCTTCATTCTCAAGGCCAGCTCCTCA  744

seq1  CTGAGGAGAAAAGGATGGACAGATTTAAGAACCATGAAGGTGAAGGCCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGAAAAGGATGGACAGATTTAAGAACCATGAAGGTGAAGGCCAG  794

seq1  ACAGATGCTGGACCACCTCTAGCTCCTGCCAGAGTCTCCACCTGGGCAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCTGGACCACCTCTAGCTCCTGCCAGAGTCTCCACCTGGGCAGC  844

seq1  CAGCCAGCCTCTCTCATGCATCCTGCTCTCCTGAGCCAAGAAAAGCTTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCCTCTCTCATGCATCCTGCTCTCCTGAGCCAAGAAAAGCTTCC  894

seq1  CTGCTTCTCTGGCCCTCAAAGACTAGTCAAGAAGCCAGGAGATGGGGGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTCTGGCCCTCAAAGACTAGTCAAGAAGCCAGGAGATGGGGGGA  944

seq1  GGGCTGGGGACTCTTGTGTCATCCTTTGCCTTCTCACAATAAATCACTAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGACTCTTGTGTCATCCTTTGCCTTCTCACAATAAATCACTAG  994

seq1  AGTGTATCTGACCTGAAAGGGGGGTGTCCGTTGTACTGTTTAACTCAGTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATCTGACCTGAAAGGGGGGTGTCCGTTGTACTGTTTAACTCAGTG  1044

seq1  CAAAAGTGTCTTATGGGAAATCTTTTCAAAAGTCAGGATTTCTTCGTCCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGTCTTATGGGAAATCTTTTCAAAAGTCAGGATTTCTTCGTCCC  1094

seq1  CGGCTCTACAAGTCAACTAGGACCATGCATATAGAGGTGATCACTCTACC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTACAAGTCAACTAGGACCATGCATATAGAGGTGATCACTCTACC  1144

seq1  ACTGAATTC  1153
      |||||||||
seq2  ACTGAATTC  1153