BAC Information

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BAC

Clone NameB6Ng01-165H08
Chromosome3 (Build37)
Map Location 132,108,743 - 132,235,336
singlet/doubletdoublet
Overlap genenone
Upstream genePapss1, Olfr375-ps1, Dkk2, LOC100039018
Downstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165H08.bB6Ng01-165H08.g
ACCDH957511DH957512
length1,0981,147
definitionDH957511|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H08, 5' end.DH957512|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,234,279 - 132,235,336)(132,108,743 - 132,109,906)
sequence
gaattcagactaggtcatttagcaattactgtcacacagcactgtggtat
ccagagatgggcaactttcctcatgcacagaccaacctaagacacggggc
ccggtggtgatagggttaccctatgacgggtaaggctgtgacattagagg
aacgacctaaaacaggagccgtggtggatggacataattgcacaggccta
gtccagcatcattttattaaaataaaaagggggagatgtgggaagccgca
aatgccattacaagatggcgctggctaccactggccaccgcccatgatta
tgggtaaacaaccaatgtgcacatgtgcttaagagtttttgctgagtcac
tgcctggcctgacgcatattaatgaggtactggtagcataaccaatcagg
tatggacacatcattcctaggcctatataagcagcaccatttctgggttc
agggtctttcgcctatgcagtcaatgctttcctaataaatgtgtgcagaa
ggatcctatcgtggtgtcattcttgctggcgagtcgggcgtctcacaccc
atggaactactatgtggagtaagctagagataataaatattcaatatccc
ctccatctgaatcaattggtgaaacccaacctaaagctagaaggtgacct
ataactttttttacacaaacagaggaagagtagctcttagccattagctt
gtgctcttccataccattaccaagcatataaataaagaaggggaagggtg
gatctgaaaacccaaattaaatgtagatagaacacataataagatctaaa
agtatattttttctctatattatattattactaacaaggaaaatgtaatc
tttattaatctgggcaaaattaaactttttatttaaagataactacatgt
ttatttaattcactttagtagttcttgaatcaaaatatcaaagtattcca
cagggatcacattttcatccacacatctctgtctcagagcctggcatact
ttgtgcagagtacagtgacatttcttgcactgctgcagtatgggtgactt
attcccaggtagggacaataaagttgaagagaataaatatgcagaaag
gaattcataaggaagcatttgcgaagggcagatttgctgaatgttttctt
ggcattgattgaggggattcgcgaactgtctcttgggtcccttgcagctt
gttagtgataactcttcgggttggcagtggtaagtaagaagcaaaagaaa
actggctgtgaaatctgtcagtttgttaacagggaaagaaggctccatgt
caccctcccccgaatgatgattttaggtagccttgacttaagtttcctct
atcaaaatctttctcccctcagccttctgttgtatttagtggtgtaacta
catatccagctactgaagactgactatgagccattttttttacttcttct
caatcctccttctcaatcacattcaattaatcatgaagtctaattgatgc
tacccactcatgactgaatccacactagctctccatcttccagtgatcct
cgtccagatcttccccatcaccttctcgctgcctctgtaactcctccatg
catctcctaacaccactcttcccatagcttattagtcacactattttttc
taaagaacaaatttcaatgatgcctgtcctgtgatttaagatctcagttg
gctccgtgcatcctaaggaaccaaatcaaagctttggagcatgacacgca
aaaactttcatgtccctaaatgagttgctggcctcagtccctccacagcc
cttccaaacaccctgtatcctagccacagggaaaataatcacggtttcct
agctgttctggtatcctttcgtgcttcataatattacagtggattctgtt
ttccctttttggccctcctctctctttcctatctcttgaattcctaggca
cttcctttgggttctcaaaattcatgtcagatgttaaaaacagaatacac
ataaaactcacttacaaaaccaggttataagctgtctttcatctgtctgg
gtaacatcccagcatttaactgtaagcacttagggaaaaaaaagcatgta
ttgctctgttttatgtttgtatcatcagaactacaatgatggaagtcgat
agaatgatcttcaagtaagtctccattgaccaagatctactgatgttgta
ccactagattgtggacatggactgttgttcaggttccatttggcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132234279_132235336
seq2: B6Ng01-165H08.b_98_1145 (reverse)

seq1  CTTTCTGCATAATTTTTTTCTCTTCAACTTTA-TGTCCCTACTTGGGAAA  49
      |||||||||||  ||| ||||||||||||||| ||||||||| |||||| 
seq2  CTTTCTGCATA--TTTATTCTCTTCAACTTTATTGTCCCTACCTGGGAAT  48

seq1  TAGTCCACCCATACTGCAGCAGTGCAAGAAATGTCACTGTTACTCCTGGC  99
       ||| |||||||||||||||||||||||||||||||||| |||||   ||
seq2  AAGT-CACCCATACTGCAGCAGTGCAAGAAATGTCACTG-TACTC--TGC  94

seq1  ACAAAGTATGCCAGGCTTCTGAGACAGAGATTGTTGTGGATTGAAAATGT  149
      |||||||||||||||| ||||||||||||||   |||||| |||||||||
seq2  ACAAAGTATGCCAGGC-TCTGAGACAGAGAT--GTGTGGA-TGAAAATGT  140

seq1  GATCCCTGTGGAATACTTTTGATATTTTGATTCAAGAACTACTAAAGTGA  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATCCCTGTGGAATAC-TTTGATATTTTGATTCAAGAACTACTAAAGTGA  189

seq1  ATTAAATAAACATGTAGTTATCTTTAAATAAAAAGTTTAATTTTGCCCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAACATGTAGTTATCTTTAAATAAAAAGTTTAATTTTGCCCAG  239

seq1  ATTAATAAAGATTACATTTTCCTTGTTAGTAATAATATAATATAGAGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAAGATTACATTTTCCTTGTTAGTAATAATATAATATAGAGAAA  289

seq1  AAATATACTTTTAGATCTTATTATGTGTTCTATCTACATTTAATTTGGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACTTTTAGATCTTATTATGTGTTCTATCTACATTTAATTTGGGT  339

seq1  TTTCAGATCCACCCTTCCCCTTCTTTATTTATATGCTTGGTAATGGTATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATCCACCCTTCCCCTTCTTTATTTATATGCTTGGTAATGGTATG  389

seq1  GAAGAGCACAAGCTAATGGCTAAGAGCTACTCTTCCTCTGTTTGTGTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCACAAGCTAATGGCTAAGAGCTACTCTTCCTCTGTTTGTGTAAA  439

seq1  AAAAGTTATAGGTCACCTTCTAGCTTTAGGTTGGGTTTCACCAATTGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATAGGTCACCTTCTAGCTTTAGGTTGGGTTTCACCAATTGATT  489

seq1  CAGATGGAGGGGATATTGAATATTTATTATCTCTAGCTTACTCCACATAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGAGGGGATATTGAATATTTATTATCTCTAGCTTACTCCACATAG  539

seq1  TAGTTCCATGGGTGTGAGACGCCCGACTCGCCAGCAAGAATGACACCACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCATGGGTGTGAGACGCCCGACTCGCCAGCAAGAATGACACCACG  589

seq1  ATAGGATCCTTCTGCACACATTTATTAGGAAAGCATTGACTGCATAGGCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCCTTCTGCACACATTTATTAGGAAAGCATTGACTGCATAGGCG  639

seq1  AAAGACCCTGAACCCAGAAATGGTGCTGCTTATATAGGCCTAGGAATGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCTGAACCCAGAAATGGTGCTGCTTATATAGGCCTAGGAATGAT  689

seq1  GTGTCCATACCTGATTGGTTATGCTACCAGTACCTCATTAATATGCGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATACCTGATTGGTTATGCTACCAGTACCTCATTAATATGCGTCA  739

seq1  GGCCAGGCAGTGACTCAGCAAAAACTCTTAAGCACATGTGCACATTGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCAGTGACTCAGCAAAAACTCTTAAGCACATGTGCACATTGGTT  789

seq1  GTTTACCCATAATCATGGGCGGTGGCCAGTGGTAGCCAGCGCCATCTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCCATAATCATGGGCGGTGGCCAGTGGTAGCCAGCGCCATCTTGT  839

seq1  AATGGCATTTGCGGCTTCCCACATCTCCCCCTTTTTATTTTAATAAAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATTTGCGGCTTCCCACATCTCCCCCTTTTTATTTTAATAAAATG  889

seq1  ATGCTGGACTAGGCCTGTGCAATTATGTCCATCCACCACGGCTCCTGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGACTAGGCCTGTGCAATTATGTCCATCCACCACGGCTCCTGTTT  939

seq1  TAGGTCGTTCCTCTAATGTCACAGCCTTACCCGTCATAGGGTAACCCTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCGTTCCTCTAATGTCACAGCCTTACCCGTCATAGGGTAACCCTAT  989

seq1  CACCACCGGGCCCCGTGTCTTAGGTTGGTCTGTGCATGAGGAAAGTTGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCGGGCCCCGTGTCTTAGGTTGGTCTGTGCATGAGGAAAGTTGCC  1039

seq1  CATCTCTGG  1058
      |||||||||
seq2  CATCTCTGG  1048

seq1: chr3_132108743_132109906
seq2: B6Ng01-165H08.g_68_1214

seq1  GAATTCATAAGGAAGCATTTGCGAAGGGCAGATTTGCTGAATGTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGGAAGCATTTGCGAAGGGCAGATTTGCTGAATGTTTTCTT  50

seq1  GGCATTGATTGAGGGGATTCGCGAACTGTCTCTTGGGTCCCTTGCAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGATTGAGGGGATTCGCGAACTGTCTCTTGGGTCCCTTGCAGCTT  100

seq1  GTTAGTGATAACTCTTCGGGTTGGCAGTGGTAAGTAAGAAGCAAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGATAACTCTTCGGGTTGGCAGTGGTAAGTAAGAAGCAAAAGAAA  150

seq1  ACTGGCTGTGAAATCTGTCAGTTTGTTAACAGGGAAAGAAGGCTCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGTGAAATCTGTCAGTTTGTTAACAGGGAAAGAAGGCTCCATGT  200

seq1  CACCCTCCCCCGAATGATGATTTTAGGTAGCCTTGACTTAAGTTTCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCCCCGAATGATGATTTTAGGTAGCCTTGACTTAAGTTTCCTCT  250

seq1  ATCAAAATCTTTCTCCCCTCAGCCTTCTGTTGTATTTAGTGGTGTAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCTTTCTCCCCTCAGCCTTCTGTTGTATTTAGTGGTGTAACTA  300

seq1  CATATCCAGCTACTGAAGACTGACTATGAGCCATTTTTTTTACTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCAGCTACTGAAGACTGACTATGAGCCATTTTTTTTACTTCTTCT  350

seq1  CAATCCTCCTTCTCAATCACATTCAATTAATCATGAAGTCTAATTGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCCTTCTCAATCACATTCAATTAATCATGAAGTCTAATTGATGC  400

seq1  TACCCACTCATGACTGAATCCACACTAGCTCTCCATCTTCCAGTGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACTCATGACTGAATCCACACTAGCTCTCCATCTTCCAGTGATCCT  450

seq1  CGTCCAGATCTTCCCCATCACCTTCTCGCTGCCTCTGTAACTCCTCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAGATCTTCCCCATCACCTTCTCGCTGCCTCTGTAACTCCTCCATG  500

seq1  CATCTCCTAACACCACTCTTCCCATAGCTTATTAGTCACACTATTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTAACACCACTCTTCCCATAGCTTATTAGTCACACTATTTTTTC  550

seq1  TAAAGAACAAATTTCAATGATGCCTGTCCTGTGATTTAAGATCTCAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACAAATTTCAATGATGCCTGTCCTGTGATTTAAGATCTCAGTTG  600

seq1  GCTCCGTGCATCCTAAGGAACCAAATCAAAGCTTTGGAGCATGACACGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGTGCATCCTAAGGAACCAAATCAAAGCTTTGGAGCATGACACGCA  650

seq1  AAAACTTTCATGTCCCTAAATGAGTTGCTGGCCTCAGTCCCTCCACAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTCATGTCCCTAAATGAGTTGCTGGCCTCAGTCCCTCCACAGCC  700

seq1  CTTCCAAACACCCTGTATCCTAGCCACAGGGAAAATAATCACGGTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAACACCCTGTATCCTAGCCACAGGGAAAATAATCACGGTTTCCT  750

seq1  AGCTGTTCTGGTATCCTTTCGTGCTTCATAATATTACAGTGGATTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCTGGTATCCTTTCGTGCTTCATAATATTACAGTGGATTCTGTT  800

seq1  TTCCCTTTTTGGCCCTCCTCTCTCTTTCCTATCTCTTGAATTCCTAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTTTGGCCCTCCTCTCTCTTTCCTATCTCTTGAATTCCTAGGCA  850

seq1  CTTCCTTTGGGTTCTCAAAATTCATGTCAGATGTTAAAAAACAGAATACA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTCCTTTGGGTTCTCAAAATTCATGTCAGATGTT-AAAAACAGAATACA  899

seq1  CATAAAACTCACTTACAAAAACCAGGTTATAAGCTGTCTTTCATCTGTCT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATAAAACTCACTTAC-AAAACCAGGTTATAAGCTGTCTTTCATCTGTCT  948

seq1  GGGTAACATCCCAGCATTTAAACTGTAAGCACTTAGGGGGAAAAAAAAAG  1000
      ||||||||||||||||||| ||||||||||||||||||   |||||||||
seq2  GGGTAACATCCCAGCATTT-AACTGTAAGCACTTAGGG---AAAAAAAAG  994

seq1  CATGTTATTTGCTCTGTTTTATGTTTGTATCATCAGGACCTACACATGAT  1050
      |||||   ||||||||||||||||||||||||||| || ||||| |||||
seq2  CATGT--ATTGCTCTGTTTTATGTTTGTATCATCA-GAACTACA-ATGAT  1040

seq1  GGGAAGTCGATAG-ATGATCCTTCAAAAGTAAGTCTTCCAATTTGACAAA  1099
       |||||||||||| ||||| ||||  ||||||||| ||||  ||||| ||
seq2  -GGAAGTCGATAGAATGAT-CTTC--AAGTAAGTC-TCCA--TTGACCAA  1083

seq1  GATCTACTGATGTTGTACCACTAGATGTGT-GACATGAGCCTGTTGTGTC  1148
      |||||||||||||||||||||||||| ||| |||||| | ||||||| ||
seq2  GATCTACTGATGTTGTACCACTAGAT-TGTGGACATG-GACTGTTGT-TC  1130

seq1  ATGTT-CATTTGGCATA  1164
      | ||| |||||||||||
seq2  AGGTTCCATTTGGCATA  1147