BAC Information

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BAC

Clone NameB6Ng01-165N15
Chromosome3 (Build37)14 (Build37)
Map Location 41,059,224 - 41,059,75198,836,890 - 98,838,011
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165N15.bB6Ng01-165N15.g
ACCDH957796DH957797
length9511,103
definitionDH957796|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N15, 5' end.DH957797|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,751)(98,836,890 - 98,838,011)
sequence
gaattcttcaggtgataattctttgttcagctctgagccccatttttaat
ggggttatttgattttctggagtccaccttcttgagttctttatatatat
attagatattagtcccctatcttatttaggatagataaagatcctttcca
atctgttgttggcctttttgtcttattgatggtgtcttttgccttgcaga
agctttgcaactttatgaggtcccatttatcaattctcaaacttacagca
caagccattgctgttctattcaggaattttttcccctgtactcatatctt
caaggcgtttccctactttctcctctataagtttcagtgtctctggtttt
atgtggagttccttaatccacttagatttgacctcagtacaaggagatag
gaatggatcaattcacattcttctacatgataaccaccagttgtgccagc
accatttgttgaaaatgctgtcttttttccactggatggttttagctccc
ttgtcaaagatcaagtgagaccataggtgtgtgggttcatctctgggtct
tcaattctcttccattggtctatttgtctgtcgctctactagtaccatgc
agttttgttttttcgtttttttttttttatcacaattactctgtagtaaa
gctttaggtcaggcatggtgattccaccagaggttcttttatccttgaga
agagtttttgctatcctaggtcttttgttattccagatgaatctgctgat
tgccttttctaattcgtcgaagaattgagttggaattttgatggggattg
cattgaatctgtagattgcttttggcaagatagctatttttactatattg
atcctgccaatccatgagcatcgagatctttccatcttctgagatctact
ttaatttctttcttcagagacttgaagttctatcataaagatcttcactt
c
gaattctgggccaacaagacagttttgtgggtaaaggaacttactaccaa
ggctgaagatctgagttcagttctggagtctataagtgggaaaggtaaaa
aaccaactcatgagggacatcctctgactgccacacacacacattttggc
atttgtacacacacacagagacacatacacacacacacacacatacacat
acacacacacacaaatacacacacacacatatgccccccacaaaataaat
aaatcaacataaaattatattacagtctaataccatttattgactttaga
agtttagatattactgcaagactttaagtattacaaaaccccaaaagtag
gacagaaattatcacatgatccacatactctctttttcactttcatgaaa
gtgacagaaacttaaattttacgttgagaattcaaaaaatatttcaatag
gataaaatgattttcttgattttatgatggaacataaaaacagaccttga
accatcttttactctcttctcacataattaaagcagactactgttaatct
tttaaatcttttttataacccataagatatcttttcattggcttaccaca
cacacacacacattgagtgcctaaaaaacatgtcaggtactctgctatgc
actgtgtttaaaatagtaaggaaaacagtttagtcctgctctccagctaa
taaagaaagaatatatgtgtaaatggaggtgcttgataaaagcaggtcat
gagtgttgatgggaaatgctacttaaatactgtgggtaggtaatcagaga
agatgatgttgatgtagtgacatgtggacagactgcagagacaggggaga
gagtggacagctctttttagtaaccttttgaagcagagtaaacagtatat
acaggcaaataagttaaaatctatttgaactttttgcctgttaatgttat
gaattaagaaccaagtctttgctcaattggcataaaatttaagaagatgc
ttctgtcctcttcttctccctctgtttcttctctcttctcccccctcctc
tctctcttcatttcattctgtttggtgctgattgaacctgagccttgtaa
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059751
seq2: B6Ng01-165N15.b_48_579 (reverse)

seq1  CCACACACCTATGG--TCACTTGATCTTCGACAAGGGAGCTAAAACCATC  48
      ||||||||||||||  |||||||||||| |||||||||||||||||||||
seq2  CCACACACCTATGGTCTCACTTGATCTTTGACAAGGGAGCTAAAACCATC  50

seq1  CAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTG  100

seq1  GTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTA  148
      ||||||||||||||||||| ||||||||||| ||||||||||||||||| 
seq2  GTTATCATGTAGAAGAATGTGAATTGATCCATTCCTATCTCCTTGTACTG  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTG  198
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGG  248
      |||||||||||||||||||| |||||| ||||||||||||||   |||||
seq2  AAACTTATAGAGGAGAAAGTAGGGAAACGCCTTGAAGATATGAGTACAGG  250

seq1  GG-AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGA  297
      || ||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  GGAAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGTTTGAGA  300

seq1  ATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGA  347
      || || |||||||||||||| ||  |||||||||||||||||||||||||
seq2  ATTGATAAATGGGACCTCATAAAGTTGCAAAGCTTCTGCAAGGCAAAAGA  350

seq1  CACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTA  396
      |||| ||||||||||||||||| || ||||||||| ||||||||||||||
seq2  CACCATCAATAAGACAAAAAGGCCAACAACAGATT-GGAAAGGATCTTTA  399

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCA--ATATATATCAAGAAC  444
       ||||||||||| |||||||||||||||||| |  |||||||| ||||||
seq2  TCTATCCTAAATAAGATAGGGGACTAATATCTAATATATATATAAAGAAC  449

seq1  TCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGC  494
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGC  498

seq1  TCAGAGCTAAACAAAGAATTATCACCTGAGGAAT  528
      |||||||| |||||||||||||||||||| ||||
seq2  TCAGAGCTGAACAAAGAATTATCACCTGAAGAAT  532

seq1: chr14_98836890_98838011
seq2: B6Ng01-165N15.g_68_1170 (reverse)

seq1  ACATATACAAGGCTCCAGGTTTCAATCCCAGCACCAAACAGAAGAGGAAA  50
      |||| ||||||||| |||| ||||||  ||||||||||||||  | ||||
seq2  ACAT-TACAAGGCT-CAGG-TTCAAT--CAGCACCAAACAGA--ATGAAA  43

seq1  TGGAGGAAGGAGAAGGAGGAGGGGGAGAAAGAGAGAAGAAACAGGAGGGA  100
      ||     | ||||  ||||||||||   ||||||||||||||| ||||||
seq2  TG-----AAGAGAGAGAGGAGGGGGGAGAAGAGAGAAGAAACA-GAGGGA  87

seq1  GAAGGAAGAGGAACAGAAGCATCTTCTTAAATTTTTATGCCAATTGAAGC  150
      ||| ||||||| ||||||||||||||||||| |||||||||||||| |||
seq2  GAA-GAAGAGG-ACAGAAGCATCTTCTTAAA-TTTTATGCCAATTG-AGC  133

seq1  AAAGACTTGGTTCTTTAATTCATAACATTAACAGGCAAAAAAGTTCAAAT  200
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  AAAGACTTGGTTC-TTAATTCATAACATTAACAGGC-AAAAAGTTCAAAT  181

seq1  AGATTTTAACTTATTTGCCTGTATATACTGTTTACTCTGCTTCAAAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAACTTATTTGCCTGTATATACTGTTTACTCTGCTTCAAAAGGT  231

seq1  TACTAAAAAGAGCTGTCCACTCTCTCCCCTGTCTCTGCAGTCTGTCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAAAGAGCTGTCCACTCTCTCCCCTGTCTCTGCAGTCTGTCCACA  281

seq1  TGTCACTACATCAACATCATCTTCTCTGATTACCTACCAACAGTATTTAA  350
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTCACTACATCAACATCATCTTCTCTGATTACCTACCCACAGTATTTAA  331

seq1  GTAGCATTTCCCATCAACACTCATGACCTGCTTTTATCAAGCACCTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTTCCCATCAACACTCATGACCTGCTTTTATCAAGCACCTCCAT  381

seq1  TTACACATATATTCTTTCTTTATTAGCTGGAGAGCAGGACTAAACTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATATATTCTTTCTTTATTAGCTGGAGAGCAGGACTAAACTGTTT  431

seq1  TCCTTACTATTTTAAACACAGTGCATAGCAGAGTACCTGACATGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTATTTTAAACACAGTGCATAGCAGAGTACCTGACATGTTTTTT  481

seq1  AGGCACTCAATGTGTGTGTGTGTGTGGTAAGCCAATGAAAAGATATCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTCAATGTGTGTGTGTGTGTGGTAAGCCAATGAAAAGATATCTTA  531

seq1  TGGGTTATAAAAAAGATTTAAAAGATTAACAGTAGTCTGCTTTAATTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTATAAAAAAGATTTAAAAGATTAACAGTAGTCTGCTTTAATTATG  581

seq1  TGAGAAGAGAGTAAAAGATGGTTCAAGGTCTGTTTTTATGTTCCATCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAGAGTAAAAGATGGTTCAAGGTCTGTTTTTATGTTCCATCATA  631

seq1  AAATCAAGAAAATCATTTTATCCTATTGAAATATTTTTTGAATTCTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAAAATCATTTTATCCTATTGAAATATTTTTTGAATTCTCAAC  681

seq1  GTAAAATTTAAGTTTCTGTCACTTTCATGAAAGTGAAAAAGAGAGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTAAGTTTCTGTCACTTTCATGAAAGTGAAAAAGAGAGTATGT  731

seq1  GGATCATGTGATAATTTCTGTCCTACTTTTGGGGTTTTGTAATACTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGTGATAATTTCTGTCCTACTTTTGGGGTTTTGTAATACTTAAA  781

seq1  GTCTTGCAGTAATATCTAAACTTCTAAAGTCAATAAATGGTATTAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAGTAATATCTAAACTTCTAAAGTCAATAAATGGTATTAGACTG  831

seq1  TAATATAATTTTATGTTGATTTATTTATTTTGTGGGGGGCATATGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATTTTATGTTGATTTATTTATTTTGTGGGGGGCATATGTGTGT  881

seq1  GTGTGTATTTGTGTGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTTGTGTGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTATGT  931

seq1  GTCTCTGTGTGTGTGTACAAATGCCAAAATGTGTGTGTGTGGCAGTCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGTGTGTGTACAAATGCCAAAATGTGTGTGTGTGGCAGTCAGA  981

seq1  GGATGTCCCTCATGAGTTGGTTTTTTACCTTTCCCACTTATAGACTCCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCCCTCATGAGTTGGTTTTTTACCTTTCCCACTTATAGACTCCAG  1031

seq1  AACTGAACTCAGATCTTCAGCCTTGGTAGTAAGTTCCTTTACCCACAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACTCAGATCTTCAGCCTTGGTAGTAAGTTCCTTTACCCACAAAA  1081

seq1  CTGTCTTGTTGGCCCAGAATTC  1122
      ||||||||||||||||||||||
seq2  CTGTCTTGTTGGCCCAGAATTC  1103