BAC Information

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BAC

Clone NameB6Ng01-166B03
Chromosome3 (Build37)
Map Location 63,872,826 - 64,008,561
singlet/doubletdoublet
Overlap geneEG56544, 4930518C23Rik, LOC380739
Upstream geneLOC666967, Mme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032
Downstream geneEG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166B03.bB6Ng01-166B03.g
ACCDH957951DH957952
length1,0001,115
definitionDH957951|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B03, 5' end.DH957952|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,872,826 - 63,873,441)(64,007,440 - 64,008,561)
sequence
gaattctttctgttgtaacaacaataaactcatgaaagttccagaaataa
tgcatgacagcaattgtaacccagttattcatcagtgttggccattaaac
tgaaaacagaaaagctactaagaaacttgaagtttttatcatacagatct
cttacttccttagcatcatgccaaggtattttattttatttgtgactatt
gtgaagggtgttgtttctctaatttctttctcagcctgtttatccttagt
gtagagaaaggccattgacttgtttgagttaattttatatccagctactt
cactgaagctgtttatcaggtttaggagttctctggtagaatttttaggg
tcacttacatatactatcatatcatgtgcaaaaagtgatattttgacttc
ttcctttccagcttgtatccccttcatttccttttgttgttgagttgctc
tggctaggacttcaaatactatgttgaataggtatgaagaaagtaggcag
ccttgtctagtccctgattttagtgggattgcttccagcttctcaccatt
tactttgatgttggctactggtttgctgtagattgcttttatcatgttta
tgtatgggcctcgaattcctgatctttccaagacttttatcatgaatggg
tgatagatttttgtcaaatgctttctaggcatctaatgagatgatcatat
ggtttttgcccttgagtttgtttatatagtggattacgttgatggatttc
cgtatactaaaccatccttgcatccctgggatgaaacctacttggtcagg
atggatgattgttttgaagtgttcttgttcggttagcgataattttattg
agtatttttgcatcgatattcatgaggaaaattgttctgaagttctctat
ttttgttgggtctttctgtggtttaggtatcagagtattatggcttcata
gaatgagttgggtaggagtaccttctgcttttattttgtggataagtttg

gaattcagattttaaaaaaaggaaaagaagaggagggctttttgttgttt
catgtagaatgccttgaaaacaatgtggtgttatgctacaggggcaatag
gtccctttgtaataaatgacaaacaaaaagtaagaagttaatatttatgt
ttttacatgagaacagcaagaagacaacttccgttaaacaactcaaaaat
aagttgtattgtgtaattgaagcataaaatgcagaaatttaaatgctgac
tttaataacttctactacaaggatttaatgtattaatattatttttattg
ttataattaatattcaaagcaaaaaaggcccagaatgatagaatatttat
gtttccaggcacattcaattaagtaagaaggcctgttctaagggattgtt
aggtgtgactagttaagaaaattgtcagtagatgaacaattttgaaaaga
aataacaagaaatttccaaatgtagtagcataaaagacatatatagggca
acaaagtataaaatagtcacataaagacttaaaagtttgacacatacaga
aagacgagacacctgctgttccttcagaaaatgctgtaatcactcattta
actgaaacttcttccctgaaaagcttcctctttcctaacccacttagggg
ccactggttcatgaacgcttttcttttccaggtttaatttctggggtttc
cactggatgaaaatcatgatccacaccatcaaggagattaatgagattca
ttccaaaacttaagaggtagaggcagatgaatctctatgcacgcatagct
agcctatttaacaaagtgagtgccaagagagtcagagctgttgtaaatgg
taattctttctcaaaaagatagaaagaaaacacagagagagagagagaga
aatacaaagatgtatagaaatattgcaaatatctatgagtccagagatgc
tttactaagctaaagaagagaagatagaatgggaccaggtctccaatact
ctgttcaactaagccctggaaatgtgacccactgtcctatttagaaagca
ctaaaatgctcaattactggagcatcatggctttcatggatttaacatgt
cactggacctcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63872826_63873441
seq2: B6Ng01-166B03.b_44_659

seq1  GAATTCTTTCTGTTGTAACAACAATAAACTCATGAAAGTTCCAGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTTGTAACAACAATAAACTCATGAAAGTTCCAGAAATAA  50

seq1  TGCATGACAGCAATTGTAACCCAGTTATTCATCAGTGTTGGCCATTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACAGCAATTGTAACCCAGTTATTCATCAGTGTTGGCCATTAAAC  100

seq1  TGAAAACAGAAAAGCTACTAAGAAACTTGAAGTTTTTATCATACAGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGAAAAGCTACTAAGAAACTTGAAGTTTTTATCATACAGATCT  150

seq1  CTTACTTCCTTAGCATCATGCCAAGGTATTTTATTTTATTTGTGACTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCCTTAGCATCATGCCAAGGTATTTTATTTTATTTGTGACTATT  200

seq1  GTGAAGGGTGTTGTTTCTCTAATTTCTTTCTCAGCCTGTTTATCCTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGTGTTGTTTCTCTAATTTCTTTCTCAGCCTGTTTATCCTTAGT  250

seq1  GTAGAGAAAGGCCATTGACTTGTTTGAGTTAATTTTATATCCAGCTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAAGGCCATTGACTTGTTTGAGTTAATTTTATATCCAGCTACTT  300

seq1  CACTGAAGCTGTTTATCAGGTTTAGGAGTTCTCTGGTAGAATTTTTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGCTGTTTATCAGGTTTAGGAGTTCTCTGGTAGAATTTTTAGGG  350

seq1  TCACTTACATATACTATCATATCATGTGCAAAAAGTGATATTTTGACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACATATACTATCATATCATGTGCAAAAAGTGATATTTTGACTTC  400

seq1  TTCCTTTCCAGCTTGTATCCCCTTCATTTCCTTTTGTTGTTGAGTTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCCAGCTTGTATCCCCTTCATTTCCTTTTGTTGTTGAGTTGCTC  450

seq1  TGGCTAGGACTTCAAATACTATGTTGAATAGGTATGAAGAAAGTAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGGACTTCAAATACTATGTTGAATAGGTATGAAGAAAGTAGGCAG  500

seq1  CCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCACCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCACCATT  550

seq1  TACTTTGATGTTGGCTACTGGTTTGCTGTAGATTGCTTTTATCATGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGATGTTGGCTACTGGTTTGCTGTAGATTGCTTTTATCATGTTTA  600

seq1  TGTATGGGCCTCGAAT  616
      ||||||||||||||||
seq2  TGTATGGGCCTCGAAT  616

seq1: chr3_64007440_64008561
seq2: B6Ng01-166B03.g_68_1182 (reverse)

seq1  CTCTGA-GTCCAGTGACCATGTT-AATCAATGAAAG-CATGATGCTCCAG  47
      |||||| ||||||||| |||||| |||| ||||||| |||||||||||||
seq2  CTCTGAGGTCCAGTGA-CATGTTAAATCCATGAAAGCCATGATGCTCCAG  49

seq1  TAATTTGAGCATTTTTAAGTGCTTTCTAAATA-GACAGTGGGTCACATTT  96
      ||| |||||||||||  ||||||||||||||| |||||||||||||||||
seq2  TAA-TTGAGCATTTT--AGTGCTTTCTAAATAGGACAGTGGGTCACATTT  96

seq1  CCAGGGCTTAGTTGAACAGAGTAATTGGGAGAACCTGGTCCCATTCTATC  146
      |||||||||||||||||||||||  | |||| ||||||||||||||||||
seq2  CCAGGGCTTAGTTGAACAGAGTA--TTGGAG-ACCTGGTCCCATTCTATC  143

seq1  TTCTC-TCTGTAGCTTAGTAAAGCATCTCTGGACCTCATAGATATTTGCA  195
      ||||| ||| ||||||||||||||||||||||| ||||||||||||||||
seq2  TTCTCTTCTTTAGCTTAGTAAAGCATCTCTGGA-CTCATAGATATTTGCA  192

seq1  ATAATTTCTATACATTCTTTGTATTTCTCTCTCTCTCTCTCTGTGTTTTC  245
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AT-ATTTCTATACA-TCTTTGTATTTCTCTCTCTCTCTCTCTGTGTTTTC  240

seq1  TTTCTTATCTTTTTTGAGAAAGAATTACCATTTACAACAGCTCTGACTCT  295
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTC-TATC-TTTTTGAGAAAGAATTACCATTTACAACAGCTCTGACTCT  288

seq1  CTTGGCACTCACTTTGTTAAATAGGCTAGCTATGCGTGCATAGAGATTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCACTCACTTTGTTAAATAGGCTAGCTATGCGTGCATAGAGATTCA  338

seq1  TCTGCCTCTACCTCTTAAGTTTTGGAATGAATCTCATTAATCTCCTTGAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTACCTCTTAAGTTTTGGAATGAATCTCATTAATCTCCTTGAT  388

seq1  GGTGTGGATCATGATTTTCATCCAGTGGAAACCCCAGAAATTAAACCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGATCATGATTTTCATCCAGTGGAAACCCCAGAAATTAAACCTGG  438

seq1  AAAAGAAAAGCGTTCATGAACCAGTGGCCCCTAAGTGGGTTAGGAAAGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGCGTTCATGAACCAGTGGCCCCTAAGTGGGTTAGGAAAGAG  488

seq1  GAAGCTTTTCAGGGAAGAAGTTTCAGTTAAATGAGTGATTACAGCATTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTTCAGGGAAGAAGTTTCAGTTAAATGAGTGATTACAGCATTTT  538

seq1  CTGAAGGAACAGCAGGTGTCTCGTCTTTCTGTATGTGTCAAACTTTTAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAACAGCAGGTGTCTCGTCTTTCTGTATGTGTCAAACTTTTAAG  588

seq1  TCTTTATGTGACTATTTTATACTTTGTTGCCCTATATATGTCTTTTATGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTGACTATTTTATACTTTGTTGCCCTATATATGTCTTTTATGC  638

seq1  TACTACATTTGGAAATTTCTTGTTATTTCTTTTCAAAATTGTTCATCTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATTTGGAAATTTCTTGTTATTTCTTTTCAAAATTGTTCATCTAC  688

seq1  TGACAATTTTCTTAACTAGTCACACCTAACAATCCCTTAGAACAGGCCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATTTTCTTAACTAGTCACACCTAACAATCCCTTAGAACAGGCCTT  738

seq1  CTTACTTAATTGAATGTGCCTGGAAACATAAATATTCTATCATTCTGGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTAATTGAATGTGCCTGGAAACATAAATATTCTATCATTCTGGGC  788

seq1  CTTTTTTGCTTTGAATATTAATTATAACAATAAAAATAATATTAATACAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGCTTTGAATATTAATTATAACAATAAAAATAATATTAATACAT  838

seq1  TAAATCCTTGTAGTAGAAGTTATTAAAGTCAGCATTTAAATTTCTGCATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTTGTAGTAGAAGTTATTAAAGTCAGCATTTAAATTTCTGCATT  888

seq1  TTATGCTTCAATTACACAATACAACTTATTTTTGAGTTGTTTAACGGAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTCAATTACACAATACAACTTATTTTTGAGTTGTTTAACGGAAG  938

seq1  TTGTCTTCTTGCTGTTCTCATGTAAAAACATAAATATTAACTTCTTACTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCTTGCTGTTCTCATGTAAAAACATAAATATTAACTTCTTACTT  988

seq1  TTTGTTTGTCATTTATTACAAAGGGACCTATTGCCCCTGTAGCATAACAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTCATTTATTACAAAGGGACCTATTGCCCCTGTAGCATAACAC  1038

seq1  CACATTGTTTTCAAGGCATTCTACATGAAACAACAAAAAGCCCTCCTCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTTTTCAAGGCATTCTACATGAAACAACAAAAAGCCCTCCTCTT  1088

seq1  CTTTTCCTTTTTTTAAAATCTGAATTC  1122
      |||||||||||||||||||||||||||
seq2  CTTTTCCTTTTTTTAAAATCTGAATTC  1115