BAC Information

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BAC

Clone NameB6Ng01-166H11
Chromosome3 (Build37)7 (Build37)
Map Location 41,059,196 - 41,059,73710,339,828 - 10,340,999
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166H11.bB6Ng01-166H11.g
ACCDH958239DH958240
length1,0101,169
definitionDH958239|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H11, 5' end.DH958240|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,196 - 41,059,737)(10,339,828 - 10,340,999)
sequence
gaattctttgcttacctctgagccccattttttaatggggttatttgaat
tttctggagtctaccttcttgattgtttatatatattggatattagtccc
ctatcctatttaggatagttaaagattctttcccgacctgttggtggcct
ttttgtctcattgacagtgtctttttccccgcaaaagctttgcattttcc
tgaggtcccatttgtcaattctcaaccttacagaactagccattgctttt
ctattcaagaatttttcccctgtgctcatatctttgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgttgagctcgttga
tccacttagatttgaccttagtccaaggagataggaatcgatcaattcgc
attcttctacatccagtggtgccagccccatttgttgaaaatgctgtctt
ttttccactggatggtttttgctcccttgtcaaagatcaagtgaacatag
atgtgtgggttcgtttctgggtcttcaattctattccaatggtctacttg
tctgttgatataccagtaccatgcagtttttatcacaattgctctctagt
acagctttaggtaaggcatggtgattccaccagaggttcttttatccttg
agaagggtttttgctatcctaggttttttgttattccagatgaatctggc
aattgccctttctaattcattgaagaattgagttggaattttgatgggga
ttgcactgaatctgtagtttgcttttggcaacatagccatttttacaata
ttgatcctggcaatccatgagcattggagacctttccttcttctgagttc
ttctttaattacttcatcagagacttaaagttcttatcatagagatcttt
cacttccttatttagggtcatgtgaagtatattacattatttgtgactat
tgagaaggtgttgttccctaatttctttctcagcctttttattctttgta
tagagcaagg
gaattctctttaatagggacggggtttcgttttctctctctcttgcttct
tgctctcttgcttcttgcactctggctcctgaagatgtaagcaataaagc
tttgccgcagaagattctggtctgtggtgttcttcctggccggtcgtgag
aacgcgtctaataacacatgaccttgcccttggtgctgtggtagacaggg
aggaaggtgacccagacactgaagaacactagcatgctgaaggtcaagaa
cttggcttcattgaatgtgtcaggcagattcttggccaagaaagccaaag
tgaagcttcccagtgccaggcaggccaagtatccaaggacacagtagaat
gcagtaactgagcccttgttgcacacaatgatgatgtggccatggagagt
gtgttcatcaatatcaacaaagggaggagaaactgctagccagattgcac
atagaacacactggagtagggaacatatggggataatgtagttgggtgtc
cctgataccacgaagtttctcaatcttctccctgggtctgtgactttgaa
agcaagaaccacagtgactgttttggccagaactgtggaaacagccacag
tgaatacaattccaaatgtgatttgttgtaagacacaggtggctctgtta
ggatgaccaatgaagaaaaatgagcacagaaaacaggacatgagtgatat
caataatatgtagctgaggattctgttattggccttcacaataggagtgt
catgatgcttcacaaagacacaaagtaccacagctgtgaatgcagagaaa
cagaaggccattaaagcaagtgccatccccaaagggtcttcatagctaag
gaaggtgacaccttttctgaatacatttgttctgttctgtattggcatat
tggtattctggacattcacacattgatccatatctgattttccaaaggaa
agcttagttaggtctgatttagaaatttattgacaggtatttcaagtaag
ggtaatgaagagaaacatttgcaatgcttgtctttgatgctgaagaatgt
aatgtgaagatattgctgctgagcattgtctttcaatcatatatagtcat
aagaaattaagggaattaaagagcaattatcttggctagttaacattttg
tatcattcataatgttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059196_41059737
seq2: B6Ng01-166H11.b_46_580 (reverse)

seq1  GAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGA  50
      |||||||||||||||| |||||||||| ||||||| ||||| ||||||||
seq2  GAATAGAATTGAAGACCCAGAAACGAACCCACACATCTATGTTCACTTGA  50

seq1  TCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTC  100
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTTTGACAAGGGAGCAAAAACCATCCAGTGGAAAAAAGACAGCATTTTC  100

seq1  AACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAAT  150
      ||||||||| |||||||| |||||        ||||||||||||||||||
seq2  AACAAATGGGGCTGGCACCACTGG--------ATGTAGAAGAATGCGAAT  142

seq1  TGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  200
      ||||| | ||||||||||||| |||||||||||||||||||||||||| |
seq2  TGATCGATTCCTATCTCCTTGGACTAAGGTCAAATCTAAGTGGATCAACG  192

seq1  AACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGG  250
      | | | ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGG  242

seq1  AAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGC  300
      ||||||||  ||||||||  |||||||||||||||| || |||||| |||
seq2  AAAAGCCTCAAAGATATGAGCACAGGGGAAAAATTCTTGAATAGAAAAGC  292

seq1  AATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAAC  350
      ||||||| || ||||||| |||||||| |||||||||||||||| |||| 
seq2  AATGGCTAGTTCTGTAAGGTTGAGAATTGACAAATGGGACCTCAGGAAAA  342

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CA  399
      |||||||||| |||  || ||||||||| |||||| ||||||||||| ||
seq2  TGCAAAGCTTTTGCGGGGAAAAAGACACTGTCAATGAGACAAAAAGGCCA  392

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  449
      ||||||| | ||||||| ||||||| |||||||||||  |||||||||||
seq2  CCAACAGGTCGGGAAAGAATCTTTAACTATCCTAAATAGGATAGGGGACT  442

seq1  AATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA-TCA  498
      |||||||||||||||| || || |||||||||| || ||||||||| |||
seq2  AATATCCAATATATATAAACAA-TCAAGAAGGTAGACTCCAGAAAATTCA  491

seq1  AATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  542
      |||||||||||||||||||||||||||||| ||| |||||||||
seq2  AATAACCCCATTAAAAAATGGGGCTCAGAGGTAAGCAAAGAATT  535

seq1: chr7_10339828_10340999
seq2: B6Ng01-166H11.g_68_1236

seq1  GAATTCTCTTTAATAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAATAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCT  50

seq1  TGCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGC  100

seq1  TTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAG  150

seq1  AACGCGTCTAATAACACATGACCTTGCCCTTGGTGCTGTGGTAGACAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCGTCTAATAACACATGACCTTGCCCTTGGTGCTGTGGTAGACAGGG  200

seq1  AGGAAGGTGACCCAGACACTGAAGAACACTAGCATGCTGAAGGTCAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTGACCCAGACACTGAAGAACACTAGCATGCTGAAGGTCAAGAA  250

seq1  CTTGGCTTCATTGAATGTGTCAGGCAGATTCTTGGCCAAGAAAGCCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTCATTGAATGTGTCAGGCAGATTCTTGGCCAAGAAAGCCAAAG  300

seq1  TGAAGCTTCCCAGTGCCAGGCAGGCCAAGTATCCAAGGACACAGTAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTCCCAGTGCCAGGCAGGCCAAGTATCCAAGGACACAGTAGAAT  350

seq1  GCAGTAACTGAGCCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAACTGAGCCCTTGTTGCACACAATGATGATGTGGCCATGGAGAGT  400

seq1  GTGTTCATCAATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATCAATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCAC  450

seq1  ATAGAACACACTGGAGTAGGGAACATATGGGGATAATGTAGTTGGGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACACACTGGAGTAGGGAACATATGGGGATAATGTAGTTGGGTGTC  500

seq1  CCTGATACCACGAAGTTTCTCAATCTTCTCCCTGGGTCTGTGACTTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATACCACGAAGTTTCTCAATCTTCTCCCTGGGTCTGTGACTTTGAA  550

seq1  AGCAAGAACCACAGTGACTGTTTTGGCCAGAACTGTGGAAACAGCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAACCACAGTGACTGTTTTGGCCAGAACTGTGGAAACAGCCACAG  600

seq1  TGAATACAATTCCAAATGTGATTTGTTGTAAGACACAGGTGGCTCTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACAATTCCAAATGTGATTTGTTGTAAGACACAGGTGGCTCTGTTA  650

seq1  GGATGACCAATGAAGAAAAATGAGCACAGAAAACAGGACATGAGTGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACCAATGAAGAAAAATGAGCACAGAAAACAGGACATGAGTGATAT  700

seq1  CAATAATATGTAGCTGAGGATTCTGTTATTGGCCTTCACAATAGGAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATGTAGCTGAGGATTCTGTTATTGGCCTTCACAATAGGAGTGT  750

seq1  CATGATGCTTCACAAAGACACAAAGTACCACAGCTGTGAATGCAGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGCTTCACAAAGACACAAAGTACCACAGCTGTGAATGCAGAGAAA  800

seq1  CAGAAGGCCATTAAGGCAAGTGCCATCCCCAAAGGGTCTTCATAGCTAAG  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCCATTAAAGCAAGTGCCATCCCCAAAGGGTCTTCATAGCTAAG  850

seq1  GAAGGTGACACC-TTTCTGAATACATTTGTTCTGTTCTGTATTGGCATAT  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGACACCTTTTCTGAATACATTTGTTCTGTTCTGTATTGGCATAT  900

seq1  TGGTATTCTGGACAATTCACACATTGATCCATATCTGA-TTTCCAAAGGA  948
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TGGTATTCTGGAC-ATTCACACATTGATCCATATCTGATTTTCCAAAGGA  949

seq1  AAGCTTAGTTAGGTCTGATTTAGAAATTTTATTGACAAGGTATTTCAAGT  998
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  AAGCTTAGTTAGGTCTGATTTAGAAA-TTTATTGAC-AGGTATTTCAAGT  997

seq1  AAGGGTAATG-AGAGAAACA-TTGCAATGC-TGTCTTTGATGCTG-AGAA  1044
      |||||||||| ||||||||| ||||||||| |||||||||||||| ||||
seq2  AAGGGTAATGAAGAGAAACATTTGCAATGCTTGTCTTTGATGCTGAAGAA  1047

seq1  TGTAATGTGAAGGATATTGCTGCTGAGCATTG-CTTTCAATCCATA-ATG  1092
      ||||||||||| |||||||||||||||||||| |||||||| |||| || 
seq2  TGTAATGTGAA-GATATTGCTGCTGAGCATTGTCTTTCAAT-CATATATA  1095

seq1  TCCATAAAGATTTAAAGGAAATAAAACCAAGCAATTTTTTCTTTGTCTAG  1142
        |||||  | |||| |||| ||||    ||||||| |    ||| ||||
seq2  GTCATAAGAAATTAAGGGAATTAAA---GAGCAATTAT---CTTGGCTAG  1139

seq1  TTAACATTTTGTATCATTTATGATGTTATT  1172
      |||||||||||||||||| || ||||||||
seq2  TTAACATTTTGTATCATTCATAATGTTATT  1169