BAC Information

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BAC

Clone NameB6Ng01-166J03
Chromosome3 (Build37)
Map Location 59,618,297 - 59,619,444
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407
Downstream geneLOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166J03.bB6Ng01-166J03.g
ACCDH958314DH958315
length1,2561,150
definitionDH958314|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J03, 5' end.DH958315|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatattatcacgaaccagtatgcacagttctgagtcctgtgcagc
tcccaaaggaggattgtcaacctcagattcagcaaggtctctgtgggctg
tacccataagaattataccaattgtaacaccacaatttgtggctcttagg
ctatattaggagctggaggtcaccttcctcatctctattgtctccatggc
ttgaggaaccaagaggactctgaatttgcagcaagggcagaaaactggag
gccagcagctgctctttctctatctgtggaagggagatcttcatctgagt
ctagaatatccagttgatggtagtgaattgcaactggcttgcttaaagca
gcttcaatctgtgatttaacaaaacttgttaatctattaaaggcccaagg
gacaaaagacaaaagcagtaaaatacccatgaaaggtcccaaaaggctgg
gaagtagggtagtgagccaagtagaagtagaaaaccaattttgataccaa
tattcttgtttctctctgttgcgttttctctcttctaaactaattctaac
gttgtctgtgctatcttaaactaagccagtattatcagaataaaaacaac
attcttctaatatctgaaatttctgtctttgtagccttaatatttgttat
accctgccttatttttgagaccactacttctaagacattaacctttgctt
ccaaatttatctataataaattgctctgacaaagtcatggaaatattctt
atgcatatcattaacaaaatgagcagtatgtagctgctgatctaaagctg
tggtagatattgaagttaaaattgcaattaaagcagtaaatcttaaaatg
agaccttttccaagtatgcattcccggatttttaaaccaaggatcatttc
ctaactctaacagcagcaaacataagcaggtctctttaacaaaatcataa
catcagattccttatctaattagatctacacattaattaattgacagatt
acaatgatataaaaagacttgtcagattggtgatctaactcttaaatttt
ttaacacatagcaatatagcaagtacaaaaacttaacagcttataaggga
gtttgtctgaatgggcaaacagtgtcttctgatggaaatcatgctaaaca
cactggagcagttcctctggctaacgagcatcatttagtgtcaaagttga
acccagtcagacctctctcgctcgagagtgatccctcacgtagcgaagag
aatatg
gaattccccagagtctgagataattctttcatctaatccactgccacaga
ataaagtagaatttaaaaaggtaaatattatcaaaagtaagcaattttta
ctcttgcaaaacccagttttgccctgcaactgctaatgctgcccatcatt
accttcctcagagaactggtgtttgatactgtggctggttcacagccata
ctggaaattaaaacctcaataaatcaaatgcaaagctcttattagtggta
tttactatgtgagagtgaaagcctagtagatgagaaaacataatcaaact
ttggcagaagttaatgatatataagttggaaaatatgcaaagatttagta
aaattaaaagctcattctttgaaaaggtcaacaatattaatgacaaatta
gtacattgccaaattagtacataaaatgcagatagaggaaccattttaag
aaaattagaaatgaaaagtgagacattaaaatatccagaaataaaattca
gaaacttctaaggatatatattatgcaaacatatattcatcaatttggaa
acactaacagaaattaatgaattctgacatgaatacaatctactaatgtt
aaacaaagatgaaataaataacttaaaaatccacatagaacaatggcaat
aaagcagtaataaaataatgcctggctaaataaatctcagggcaagggtg
gatttagtgcagatttctaccaaaacttctaacagaatataatattttta
ttccataaaataaaacagaaaggaaagtttacaagctcctttttgaaggc
agtattaccatattatcaaaatcagataaggacttcagaaaagaaaatta
cagaatagtcttgatgtacacagattcaaaaatcctccataaaacacata
gggatcatgttcaatagtaaatcaaaagatctcccatcttgactagattg
gctttaaacagtgattggacttacagtaacagtaagggaatatttcaaag
ctcttttggaaacaataatgattctacttaataatcaaatgctatagaac
atgaattgtaaaaaaattttagaacaaggtaatagtgattttgggtaaca
ataattatgctgtagaaatgaatgtgtggaaatgtttgtagacaaatgaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59618297_59619444
seq2: B6Ng01-166J03.g_66_1215

seq1  GAATTCCCCAGAGTCTGAGATAATTCTTTCATCTAATCCACTGCCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGAGTCTGAGATAATTCTTTCATCTAATCCACTGCCACAGA  50

seq1  ATAAAGTAGAATTTAAAAAGGTAAATATTATCAAAAGTAAGCAATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAGAATTTAAAAAGGTAAATATTATCAAAAGTAAGCAATTTTTA  100

seq1  CTCTTGCAAAACCCAGTTTTGCCCTGCAACTGCTAATGCTGCCCATCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAAAACCCAGTTTTGCCCTGCAACTGCTAATGCTGCCCATCATT  150

seq1  ACCTTCCTCAGAGAACTGGTGTTTGATACTGTGGCTGGTTCACAGCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTCAGAGAACTGGTGTTTGATACTGTGGCTGGTTCACAGCCATA  200

seq1  CTGGAAATTAAAACCTCAATAAATCAAATGCAAAGCTCTTATTAGTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATTAAAACCTCAATAAATCAAATGCAAAGCTCTTATTAGTGGTA  250

seq1  TTTACTATGTGAGAGTGAAAGCCTAGTAGATGAGAAAACATAATCAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATGTGAGAGTGAAAGCCTAGTAGATGAGAAAACATAATCAAACT  300

seq1  TTGGCAGAAGTTAATGATATATAAGTTGGAAAATATGCAAAGATTTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGAAGTTAATGATATATAAGTTGGAAAATATGCAAAGATTTAGTA  350

seq1  AAATTAAAAGCTCATTCTTTGAAAAGGTCAACAATATTAATGACAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAGCTCATTCTTTGAAAAGGTCAACAATATTAATGACAAATTA  400

seq1  GTACATTGCCAAATTAGTACATAAAATGCAGATAGAGGAACCATTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTGCCAAATTAGTACATAAAATGCAGATAGAGGAACCATTTTAAG  450

seq1  AAAATTAGAAATGAAAAGTGAGACATTAAAATATCCAGAAATAAAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGAAATGAAAAGTGAGACATTAAAATATCCAGAAATAAAATTCA  500

seq1  GAAACTTCTAAGGATATATATTATGCAAACATATATTCATCAATTTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCTAAGGATATATATTATGCAAACATATATTCATCAATTTGGAA  550

seq1  ACACTAACAGAAATTAATGAATTCTGACATGAATACAATCTACTAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACAGAAATTAATGAATTCTGACATGAATACAATCTACTAATGTT  600

seq1  AAACAAAGATGAAATAAATAACTTAAAAATCCACATAGAACAATGGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGATGAAATAAATAACTTAAAAATCCACATAGAACAATGGCAAT  650

seq1  AAAGCAGTAATAAAATAATGCCTGGCTAAATAAATCTCAGGGCAAGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTAATAAAATAATGCCTGGCTAAATAAATCTCAGGGCAAGGGTG  700

seq1  GATTTAGTGCAGATTTCTACCAAAACTTCTAACAGAATATAATATTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGTGCAGATTTCTACCAAAACTTCTAACAGAATATAATATTTTTA  750

seq1  TTCCATAAAATAAAACAGAAAGGAAAGTTTACAAGCTCCTTTTTGAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAAATAAAACAGAAAGGAAAGTTTACAAGCTCCTTTTTGAAGGC  800

seq1  AGTATTACCATATTATCAAAATCAGATAAGGACTTCAGAAAAGAAAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTACCATATTATCAAAATCAGATAAGGACTTCAGAAAAGAAAATTA  850

seq1  CAGAATAGTCTTGATGTACACAGATTCAAAAATCCTCCATAAAACACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGTCTTGATGTACACAGATTCAAAAATCCTCCATAAAACACATA  900

seq1  GGGATCATGTTCAATAGTAAATCAAAAGATCTCCCATCTTGACTAGATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCATGTTCAATAGTAAATCAAAAGATCTCCCATCTTGACTAGATTG  950

seq1  GCTTTAAACAGTGATTGGACTTACAGTAACAGTAGGGGAATAATTTCAAA  1000
      |||||||||||||||||||||||||||||||||| |||||| ||||| ||
seq2  GCTTTAAACAGTGATTGGACTTACAGTAACAGTAAGGGAAT-ATTTC-AA  998

seq1  AGCTCTTTTGAAAACAATAATGATTCTACTTAATAATCATATGCTATAG-  1049
      |||||||||| |||||||||||||||||||||||||||| ||||||||| 
seq2  AGCTCTTTTGGAAACAATAATGATTCTACTTAATAATCAAATGCTATAGA  1048

seq1  ACATGAATTGTAGAAAAATTTTAG-ACAAGTTAATAGTGATTTTGGTTAA  1098
      |||||||||||| ||||||||||| ||||| ||||||||||||||| |||
seq2  ACATGAATTGTAAAAAAATTTTAGAACAAGGTAATAGTGATTTTGGGTAA  1098

seq1  CAATAA-TATGCTGTAGAAATGAAT-TGTTGAAAATGTTGTAGACAAATG  1146
      |||||| |||||||||||||||||| ||| ||||   |||||||||||||
seq2  CAATAATTATGCTGTAGAAATGAATGTGTGGAAATGTTTGTAGACAAATG  1148

seq1  AA  1148
      ||
seq2  AA  1150