BAC Information

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BAC

Clone NameB6Ng01-166J08
Chromosome3 (Build37)
Map Location 41,059,226 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166J08.bB6Ng01-166J08.g
ACCDH958322DH958323
length8451,186
definitionDH958322|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J08, 5' end.DH958323|Mus musculus domesticus DNA, BAC clone: B6Ng01-166J08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccacattcttctgttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatttgttggtggcct
ttttgtcttattgacggtatcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatctttgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgatcttagtacaaggagatagaaatggatcaattcgc
atttttctacatgataccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagttcccttgtcaaagatcaagtg
accataggtgtgtaggttcatttctgggttcaattctatttatttttcga
gacagggtttctttgtatagccctggaactcactctgtagattaggctcg
cctcaaactcagaaatctgcctgcctctgcctcccgagtgctgggattaa
agttgtgtgccaccaagcccagcttgatcattcttttaaatacatttttt
ccttgaatgatcatactcactcctaccttcagttacaaaatattatgttg
acagttgatgcatctacagtacaaaccctgtccctaaggctcacagtgta
ttgtcaaaaatggaagaaatatagcaccgggtatgttgtgtctgc
gaattcctcagttgagaatgatttgtttagctcagtatcccactttttta
atagggttagttgattctctgggatctaacttcttgagttatttgtatat
attggatattagccctctatcaaatgtaagattggcaaagatcttttccc
atctgtgtgttgctgttatgtcctattgagaatgtcctttgccttataga
agctttgcaattttatgaggcccatttgtcagttcttgatcttagagcat
aagttattggtactctcttcaggaacttttcccatgtgcccatgtcctca
aggctcttccccaatcttttctactagtttctgtgtatctggttttatat
ggaggtctttgatcctgttggatttgagcattgtagaaggaagtaagaat
ggataaattttcattcttctatatgctaactgccagttgaaccaacatta
tttgtggataatgctgtctttttccccactggatggttttaagtactttt
tcaaatatcaggtgaccataggtgtgtgggttcattcttgggtcttcaat
tctgttccattgatctaactgcctgtcactgtaccaatatcaagcagttt
ttatgactattgctcagtagtatggctgaaggtcagtgatggtgattctg
ccaaaagttcttttattgttgagaatagttttcactatcctgtttgttgt
tgttattgttgttattccagatgaatatgcaaattgttctttctaactct
atgaagaattgagttggaattttggtaggggttgcattgaatctgtagat
tgcttttggcaagatggccattttttttttttattatattaatcccgcag
aatcatgcgtgtggaagatctttctatcttctgagatcttcattgatttc
tttcttcagaggcttgaagttctgccattcagatctttcccttacttaat
tagagtcacacaaatatagtttatattatttgtggcttttatgaaagtgt
tgtttccctactttctttttcagttctgttttctttttgtgtgggagaaa
gggcattgagatatgtgttgagaatgttttatccacgcactctcactgaa
ggtgtgtatcagcttaagagatatttgcgggagatatgggcctcggaacc
tatcactcgaaagataagttgtaacgtcctccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059226_41059737
seq2: B6Ng01-166J08.b_45_556 (reverse)

seq1  ACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGT  50
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  ACACACCTATGGTCACTTGATCTTTGACAAGGGAACTAAAACCATCCAGT  50

seq1  GGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||  | ||
seq2  GGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGG-CGGTA  99

seq1  TCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGT  150
      |||||||||| |||||||||||||||| | |||||||||||||||||| |
seq2  TCATGTAGAAAAATGCGAATTGATCCATTTCTATCTCCTTGTACTAAGAT  149

seq1  CAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAAC  200
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  CAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAAC  199

seq1  TTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAA  250
      |||||||||||||||| |||||||||||  |||||||||  |||||||||
seq2  TTATAGAGGAGAAAGTAGGGAAAAGCCTCAAAGATATGGGTACAGGGGAA  249

seq1  AAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGA  300
      ||||||||| |||||||||||||||||||||||||||||| |||||| ||
seq2  AAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGA  299

seq1  CAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCG  350
       |||||||||||||| ||| |||||||||||||||| |||||||| ||||
seq2  TAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGATACCG  349

seq1  TCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTAT  399
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TCAATAAGACAAAAAGGCCACCAACAAATTGGGAAAGGATCTTTACCTAT  399

seq1  CCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAA  449
      || ||||| ||||||||||||||||||||||||||| ||||||  |||||
seq2  CCCAAATCGGATAGGGGACTAATATCCAATATATATAAAGAACAGAAGAA  449

seq1  GGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGC  499
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGC  499

seq1  TAAACAAAGAATT  512
      |||||||||||||
seq2  TAAACAAAGAATT  512