BAC Information

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BAC

Clone NameB6Ng01-168A07
Chromosome3 (Build37)
Map Location 142,984,241 - 143,124,314
singlet/doubletdoublet
Overlap gene1700001N15Rik
Upstream genePdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
Downstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168A07.bB6Ng01-168A07.g
ACCDH959365DH959366
length1,001801
definitionDH959365|Mus musculus domesticus DNA, BAC clone: B6Ng01-168A07, 5' end.DH959366|Mus musculus domesticus DNA, BAC clone: B6Ng01-168A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,984,241 - 142,985,169)(143,123,538 - 143,124,314)
sequence
gaattccttttttttctgttttattaggattgaggggggtggcatttccc
atgctctacccaaagtcccccataccctcccatcctaaactggggagtga
tctgaacccccatgaatccccttttctccccctggcctaatatgggtgga
taagggacttccattagaggtgacttaactagtaatttaggatgagaatc
atggataattttttagcaaacaaggcatgagaaatagacaccaaatgttt
ttatttagttatatctattgatattattatgccccctccccagccccaag
actcacagggcaacctggatgagggatttgatgttgtcattctgtaaacc
gtataatcatgcattagctcgtttatggatgttcaagtaactttatggac
catgtttaggttaatgatgagcagaaatgccattaaaatgggatctgatt
atttaattcaccagtgacatgcattattgatatttgaaaagcaatctcag
tcgcaacttttgtgggttttgttcatgcatttgttaagatttcaggcgat
ctccttctccctcatcctcagcaaacgaaacaagtccctttaaaatgcca
ggtgacatattcaagaaggctttctgttatcagaacacaagcgccttgtg
ctttctaaagctaatgctgttactttgaaatttcaagtgcgctatgtggc
caagctcctctgatgaaatagagattgcagcatttactgaaagatgaatc
atgattccatcatttacttagggatccagggttgggagtaaaatacaccc
aataggagattgttaaaaatgattagattacatctgaagggttcttccct
gccatatttgactggacgttcgacaaaattgactagttcctcatgggggg
catggacagaaaagaacaatcaatgcctcttaggaatattatgttgaggg
tggaaagtggccaaaaggcacatgcatgatagtctgtatcttgaggctgt
a
gaattccataatctcttagaaacgatagcctccccgacacaccttgatgc
agcagaaagagtacccgagatctgtggaatgtggcatatctcctaggaca
gccagctcaatccatgcatttcaacctttagcatataggatcctggactc
ctggttcgtaactattcaaaattgcttttctggagtaaagccacagatag
gaaaacgttctagatgctacagagatcaaaaatgagttcttgagttgttt
ggttaaagtgaaacaaaatctctctaaaacatggtcatttaaaacagaat
ctgagcttcatttcatgtctgtaagggaatgactagctgccttaattgaa
atggaaagacccaccccaaatgtgggggtgccgttccatgacttgttgtg
gtctgaataaaaaacaaaaaaattgagccccagcatttttctccttctac
tttttactgttaacacaatgagtccatatatgtcatggacctgcccctgt
gcctttcccataaaaacaaacaaacaaacaaactaacaaaccccatatct
gaaaagggtgtggtggctgattcctgtaatgccaaccttcaggatactga
agcatcagagtcatcagccagcccaagctacatggtgatatccagcctac
cctgacattcagaatgaagctgtggcaaaaaaatgtgtgagatctcagag
cttatctccacatgggtatctctggtggaatagagtcctctgaagagaac
actgttggtcatggaaagcagacagctcaagggtctgtctctacagagtg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142984241_142985169
seq2: B6Ng01-168A07.b_126_1044

seq1  TCCTAAACTGGGGAGTGATTTGAAGTATTATGAATCCCGTTTTCACTTAA  50
      ||||||||||||||||||| ||||     ||||||||| ||||| |    
seq2  TCCTAAACTGGGGAGTGATCTGAACCCCCATGAATCCCCTTTTCTCCCCC  50

seq1  GGGCAGAATATGGGTGGATAAGGGACTTCCATTAGAGGTGACATAACTAG  100
       |||  |||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGCCTAATATGGGTGGATAAGGGACTTCCATTAGAGGTGACTTAACTAG  100

seq1  TAATTTAGGATGAGAATCATGGATAATTTTTTAGCAAACAAGGCATGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAATTTAGGATGAGAATCATGGATAATTTTTTAGCAAACAAGGCATGAGA  150

seq1  AATAGACACAAAATGTTTTTAGTTAATTATATCTATTGATATTATTATGC  200
      ||||||||| ||||||||||| ||| ||||||||||||||||||||||||
seq2  AATAGACACCAAATGTTTTTATTTAGTTATATCTATTGATATTATTATGC  200

seq1  CCAGTCCCCAGCCCCAAGACTCACAGGGCAACCTGGATGAGGGATTTGAT  250
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCAGCCCCAAGACTCACAGGGCAACCTGGATGAGGGATTTGAT  250

seq1  GTTGTCATTCTGTAAACCGTATAATCATGCATTAGCTCGTTTATGGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATTCTGTAAACCGTATAATCATGCATTAGCTCGTTTATGGATGT  300

seq1  TCAAGTAACTTTATGGACCATGTTTAGGTTAATGATGAGCAGAAATGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAACTTTATGGACCATGTTTAGGTTAATGATGAGCAGAAATGCCA  350

seq1  TTAAAATGGGATCTGATTATTTAATTCACCAGTGACATGCATTATTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGGGATCTGATTATTTAATTCACCAGTGACATGCATTATTGATA  400

seq1  TTTGAAAAGCAGTCGCAGTCGCAACTTTTGTGGGTTTTGTTCATGCATTT  450
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGCAATCTCAGTCGCAACTTTTGTGGGTTTTGTTCATGCATTT  450

seq1  GTTAAGATTTCAGGCGATCTCCTTCTCCCTCATCCTCAGCAAACGAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATTTCAGGCGATCTCCTTCTCCCTCATCCTCAGCAAACGAAACA  500

seq1  AGTCCCTTTAAAATGCCAGGTGACATATTCAAGAAGGCTTTCTGTTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTTAAAATGCCAGGTGACATATTCAAGAAGGCTTTCTGTTATCA  550

seq1  GAACACAAGCGCCTTGTGCTTTCTAAAGCTAATGCTGTTACTTTGAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAGCGCCTTGTGCTTTCTAAAGCTAATGCTGTTACTTTGAAATT  600

seq1  TCAAGTGCGCTATGTGGCCAAGCTCCTCGGATGAAATAGAGATTGCAGCA  650
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAAGTGCGCTATGTGGCCAAGCTCCTCTGATGAAATAGAGATTGCAGCA  650

seq1  TTTACTGAAAGATGAATCATGATTCCATCATTTACTTAGGGATCCAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAAAGATGAATCATGATTCCATCATTTACTTAGGGATCCAGGGT  700

seq1  TGGGAGTAGAAGTACAGCCAAGAGGAGATTGTTCAAAAATGATTAGATTA  750
      |||||||| || |||| |||| ||||||||||| ||||||||||||||||
seq2  TGGGAGTA-AAATACACCCAATAGGAGATTGTT-AAAAATGATTAGATTA  748

seq1  CATCTGAAGGGTTCTTCCCTGTCATATTTGACTGGTCTTTTGACAAAAAT  800
      ||||||||||||||||||||| ||||||||||||| | || ||| |||||
seq2  CATCTGAAGGGTTCTTCCCTGCCATATTTGACTGGACGTTCGAC-AAAAT  797

seq1  TGACTAGTTCCATCATGGGGGGCATGGTCAGAAAAGAACAATCAATTGCC  850
      ||||||||||| ||||||||||||||| ||||||||||||||||| ||||
seq2  TGACTAGTTCC-TCATGGGGGGCATGGACAGAAAAGAACAATCAA-TGCC  845

seq1  TCTTAGGAATATTTATGTTTGAAGGCTGGAAAGTGAGCCAAAAGGGACAT  900
      ||||||||||| |||||||   ||| ||||||||| ||||||||| ||||
seq2  TCTTAGGAATA-TTATGTT--GAGGGTGGAAAGTG-GCCAAAAGGCACAT  891

seq1  GCATGATAGTCCTTTATTTTGAGGCTGTA  929
      |||||||||| || ||| |||||||||||
seq2  GCATGATAGT-CTGTATCTTGAGGCTGTA  919

seq1: chr3_143123538_143124314
seq2: B6Ng01-168A07.g_92_866 (reverse)

seq1  GCACTCTGTAGACACAGACCCCTGAACCCTCTGCCTACCATGGCCCATAG  50
      |||||||||||| |||||||| ||| |  ||||| | ||||| || | ||
seq2  GCACTCTGTAGAGACAGACCCTTGAGCTGTCTGCTTTCCATGACCAACAG  50

seq1  TGTTCTCCACAGAGGCCTCTATTCCACCAGAGATACCCATGCTGAGATAA  100
      |||||||  |||||| |||||||||||||||||||||||||  |||||||
seq2  TGTTCTCTTCAGAGGACTCTATTCCACCAGAGATACCCATGTGGAGATAA  100

seq1  GCTCTGCTGTCTCACATTCTTTTTTTGCCACAGCTTCATTCTGAATGCCA  150
      ||||||   |||||||   |||||||||||||||||||||||||||| ||
seq2  GCTCTGAGATCTCACA-CATTTTTTTGCCACAGCTTCATTCTGAATGTCA  149

seq1  GGGTAGGCTGGAAATCACCATGTAGCTTGGGCTGGCTGATGACTCTCTTG  200
      |||||||||||| |||||||||||||||||||||||||||||||||  ||
seq2  GGGTAGGCTGGATATCACCATGTAGCTTGGGCTGGCTGATGACTCTGATG  199

seq1  CCTCAGTCTCCTGAAGGTTGGCACTACAGGACTCAGCCACCACACCCTTT  250
      | ||||| ||||||||||||||| ||||||| ||||||||||||||||||
seq2  CTTCAGTATCCTGAAGGTTGGCATTACAGGAATCAGCCACCACACCCTTT  249

seq1  TCAGATATGGGGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTATGGGAAAG  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAGATATGGGGTTTGTTAGTTTGTTTGTTTGTTTGTTTTTATGGGAAAG  299

seq1  GCACAGGGGCATGTACATGACATATATGGACACATTGTGTTAACAGTAAA  350
      ||||||||||| || |||||||||||||||| ||||||||||||||||||
seq2  GCACAGGGGCAGGTCCATGACATATATGGACTCATTGTGTTAACAGTAAA  349

seq1  AAGTAGAAGGAGAAAAATGCTGGGGCTCAATTTTTTTCTTTTTTATTCAG  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGTAGAAGGAGAAAAATGCTGGGGCTCAATTTTTTTGTTTTTTATTCAG  399

seq1  ACCAAAACAAGTCATGGAATGGCACCCCCACATTTGGGGTGGGTCTTTCC  450
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCACAACAAGTCATGGAACGGCACCCCCACATTTGGGGTGGGTCTTTCC  449

seq1  ATTTCAATTAAGGCAGCTAGTCATTCCCTTACAGACATGAAATGAAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATTAAGGCAGCTAGTCATTCCCTTACAGACATGAAATGAAGCTC  499

seq1  AGATTCTGTTTTAAATGACCATGTTTTAGAGAGATTTTGTTTTACTTTAA  550
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGATTCTGTTTTAAATGACCATGTTTTAGAGAGATTTTGTTTCACTTTAA  549

seq1  CCAAACAACTCAAGAACTCACTTCTGATCTCTGTAGCATCTAGAACGTTT  600
      |||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  CCAAACAACTCAAGAACTCATTTTTGATCTCTGTAGCATCTAGAACGTTT  599

seq1  TCCTATCTGTGGCTTTATTTGTTTACTTGCAATTTTGAATAGTTATGAAC  650
      |||||||||||||||||  |    |   ||||||||||||||||| ||||
seq2  TCCTATCTGTGGCTTTA-CTCCAGAAAAGCAATTTTGAATAGTTACGAAC  648

seq1  CAGGAGTCCTGGATCCTATATGATAAAGGTTGAAATGCATGGATTGAGCT  700
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CAGGAGTCCAGGATCCTATATGCTAAAGGTTGAAATGCATGGATTGAGCT  698

seq1  GGCTGTCCTAGGAGATATGCCACATTCCACAGCTCTCTGTTACTCTTTCT  750
      |||||||||||||||||||||||||||||||| |||| | ||||||||||
seq2  GGCTGTCCTAGGAGATATGCCACATTCCACAGATCTCGGGTACTCTTTCT  748

seq1  GCTCCATCATGGTGTCTCCTGGAGGCT  777
      ||| ||||| ||||| ||  |||||||
seq2  GCTGCATCAAGGTGTGTCGGGGAGGCT  775