BAC Information

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BAC

Clone NameB6Ng01-169M08
Chromosome3 (Build37)18 (Build37)
Map Location 41,059,222 - 41,059,73771,836,570 - 71,837,539
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169M08.bB6Ng01-169M08.g
ACCDH960657DH960658
length975970
definitionDH960657|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M08, 5' end.DH960658|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,222 - 41,059,737)(71,836,570 - 71,837,539)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatgttagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtgccctt
tttgtcttattgatggtgtcttttgccttacagaagctttgcaattttat
gaggtcccatttgttgattctcgatcttacagcacaatccattgctgttc
tattcaggaattttcccccagtgcccatatcttcgaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtggagctccttaat
ccacttagatttgaccttagtgcaaggagataggcatggatcaattcaca
ttcttctacatgataactgccagttgtgccagcaccatttgttgaaaatg
ctgtctttttttccactggaaggttttagctcccttgtcaaagatcaatt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcgctataccagtaccatgcagttttatttatcgcaat
tgctctgaagtacagctttaggtcaggtatggtgattccaccagaggttc
ttttatccttgagaagagtttttgctatcctaggttttatgttatggcag
atgaatttggagattgccttttccaattcattgaagaattttgatgggga
ttgcattgaatctgtagattgcatttggcaagatagccatttttactata
ttgatcctgccaatccatgagcatgggagatctttccatcttctgagatc
ttatttaatttctttctttagagacttaaagttcttatcatacagatctt
tcacttccttagagtcatgccaaggtattttatattatttgtgactattg
agaatgctgttgtttccctaatttc
gaattcagatgaaatggtatgaaatgaagagggaaatcccaaaacatgaa
agaatatcactatgaatctcttctattccccacatacgtgatgcattgct
tttttcctgcctcctgaatctggtcctcaaataatggcactctaattctt
cagagatgtagtgtgggctgtgtgcacagatggtggggaggccaactata
aatatgaattaagcagtgaggttgaccatggtgtgaataacataaccctc
tctatttaaatttaaacaataaatggtcaacacacattttgagccacatt
gtgaccctgcgtagcacagctgttcagcttttgagtactcatagacctgt
ggctcagagttacccttggcaaccatagcagtttgcttcttcctcaaatg
aagacagtaacctgtttatcccagattccatttccataagcctcaagaag
tttcttcattctcttatctatagttatctgatgcttgtcttttctttttc
cattggggaataaaaggggattgcagtaataattcaattaaagatatgtt
gttttttatagaaaaacaaatttggcgaaaatgattaaaatgtatttatt
gtaaaatatgaaatatatgtgcgattttcactagatcaagatcccgtggg
tagcattttaaaaaatcattatagcattttgaggctccgttaataaaggt
acttgggtaacactggtacatatgcatggggcacactgcaggatttagac
caatcatatgtattcctatggacaaaggatgaaccttggctatttaagag
tttggtgaacaccaggaatacatagctacatcatgtaaacagtggcctat
acaaattaaatacaactctttaagtgcattaataatctctcctcagagct
gatgacagagatatatatcttttgttactgtttgtttcaattaatttgag
agtggggtgggggttgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059222_41059737
seq2: B6Ng01-169M08.b_46_562 (reverse)

seq1  ATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      | ||||||||||||||||| |||||||| |||||||||||||||||| ||
seq2  ACCCACACACCTATGGTCAATTGATCTTTGACAAGGGAGCTAAAACCTTC  50

seq1  CAGTGG-AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGT  99
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTGGAAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGC  100

seq1  TGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACT  149
       ||||||||||||||||||| |||||||||||  |||||||||||| |||
seq2  AGTTATCATGTAGAAGAATGTGAATTGATCCATGCCTATCTCCTTGCACT  150

seq1  AAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACT  199
      |||||||||||||||||||| ||||| | |||||||||||||||||||||
seq2  AAGGTCAAATCTAAGTGGATTAAGGAGCTCCACATAAAACCAGAGACACT  200

seq1  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAG  249
      ||||||||||||||||||||||||||||||||| |||||||||| ||| |
seq2  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACTG  250

seq1  GGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGA  299
      ||| |||||||||| ||||||||||||||| |||||||||||||| ||||
seq2  GGGGAAAATTCCTGAATAGAACAGCAATGGATTGTGCTGTAAGATCGAGA  300

seq1  ATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGA  349
      ||  |||||||||||||||| ||| ||||||||||||| |||||||||||
seq2  ATCAACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGA  350

seq1  CACCGTCAATAAGACAAAAA-GGCACCAACAGATTGGGAAAGGATCTTTA  398
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACCATCAATAAGACAAAAAGGGCACCAACAGATTGGGAAAGGATCTTTA  400

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTC  448
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  CCTATCCTAAATCAGATAGGGGACTAACATCCAATATATATAAAGAACTC  450

seq1  AAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTC  498
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  AAGAAGGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTC  499

seq1  AGAGCTAAACAAAGAATT  516
      ||||||||||||||||||
seq2  AGAGCTAAACAAAGAATT  517

seq1: chr18_71836570_71837539
seq2: B6Ng01-169M08.g_69_1038 (reverse)

seq1  ACATCAA-CCCCACCCCACTCTCAAAATTAATTGAAACAAACAGTAACAA  49
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  ACATCAACCCCCACCCCACTCTC-AAATTAATTGAAACAAACAGTAACAA  49

seq1  AAGATATATATCTCTGTCATCAGCTCTGAGGAGAGATTATTAATGCACTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATATATCTCTGTCATCAGCTCTGAGGAGAGATTATTAATGCACTT  99

seq1  AAAGAGTTGTATTTAATTTGTATAGGCCACTGTTTACATGATGTAGCTAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTGTATTTAATTTGTATAGGCCACTGTTTACATGATGTAGCTAT  149

seq1  GTATTCCTGGTGTTCACCAAACTCTTAAATAGCCAAGGTTCATCCTTTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTGGTGTTCACCAAACTCTTAAATAGCCAAGGTTCATCCTTTGT  199

seq1  CCATAGGAATACATATGATTGGTCTAAATCCTGCAGTGTGCCCCATGCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGAATACATATGATTGGTCTAAATCCTGCAGTGTGCCCCATGCAT  249

seq1  ATGTACCAGTGTTACCCAAGTACCTTTATTAACGGAGCCTCAAAATGCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCAGTGTTACCCAAGTACCTTTATTAACGGAGCCTCAAAATGCTA  299

seq1  TAATGATTTTTTAAAATGCTACCCACGGGATCTTGATCTAGTGAAAATCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTTTTAAAATGCTACCCACGGGATCTTGATCTAGTGAAAATCG  349

seq1  CACATATATTTCATATTTTACAATAAATACATTTTAATCATTTTCGCCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATTTCATATTTTACAATAAATACATTTTAATCATTTTCGCCAA  399

seq1  ATTTGTTTTTCTATAAAAAACAACATATCTTTAATTGAATTATTACTGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTTCTATAAAAAACAACATATCTTTAATTGAATTATTACTGCA  449

seq1  ATCCCCTTTTATTCCCCAATGGAAAAAGAAAAGACAAGCATCAGATAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTTTATTCCCCAATGGAAAAAGAAAAGACAAGCATCAGATAACT  499

seq1  ATAGATAAGAGAATGAAGAAACTTCTTGAGGCTTATGGAAATGGAATCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAGAGAATGAAGAAACTTCTTGAGGCTTATGGAAATGGAATCTG  549

seq1  GGATAAACAGGTTACTGTCTTCATTTGAGGAAGAAGCAAACTGCTATGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAACAGGTTACTGTCTTCATTTGAGGAAGAAGCAAACTGCTATGGT  599

seq1  TGCCAAGGGTAACTCTGAGCCACAGGTCTATGAGTACTCAAAAGCTGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGGTAACTCTGAGCCACAGGTCTATGAGTACTCAAAAGCTGAAC  649

seq1  AGCTGTGCTACGCAGGGTCACAATGTGGCTCAAAATGTGTGTTGACCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCTACGCAGGGTCACAATGTGGCTCAAAATGTGTGTTGACCATT  699

seq1  TATTGTTTAAATTTAAATAGAGAGGGTTATGTTATTCACACCATGGTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTAAATTTAAATAGAGAGGGTTATGTTATTCACACCATGGTCAA  749

seq1  CCTCACTGCTTAATTCATATTTATAGTTGGCCTCCCCACCATCTGTGCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGCTTAATTCATATTTATAGTTGGCCTCCCCACCATCTGTGCAC  799

seq1  ACAGCCCACACTACATCTCTGAAGAATTAGAGTGCCATTATTTGAGGACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCACACTACATCTCTGAAGAATTAGAGTGCCATTATTTGAGGACC  849

seq1  AGATTCAGGAGGCAGGAAAAAAGCAATGCATCACGTATGTGGGGAATAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGGAGGCAGGAAAAAAGCAATGCATCACGTATGTGGGGAATAGA  899

seq1  AGAGATTCATAGTGATATTCTTTCATGTTTTGGGATTTCCCTCTTCATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCATAGTGATATTCTTTCATGTTTTGGGATTTCCCTCTTCATTT  949

seq1  CATACCATTTCATCTGAATTC  970
      |||||||||||||||||||||
seq2  CATACCATTTCATCTGAATTC  970