BAC Information

Click to search

BAC

Clone NameB6Ng01-171F14
Chromosome3 (Build37)
Map Location 149,276,999 - 149,404,109
singlet/doubletdoublet
Overlap geneLOC100040620
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171F14.bB6Ng01-171F14.g
ACCGA000260GA000261
length720980
definitionB6Ng01-171F14.b B6Ng01-171F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,403,392 - 149,404,109)(149,276,999 - 149,277,977)
sequence
gaattcaaactaacacaaatgttctcttgtaaccaactaaacaatactca
tctgatcaatactatgctcttctctgtgaggaaacaagcaagactctctt
ccctgagggatgatatccaaagctctgctatattactacatcagtctcta
actgatggtgaaccctcaggacttatatggcacctcgttgtgctatgacc
tgatacctgtgcaaagtcctacaattgtggccagtgatgaaaaatataac
catgctactgttattatttactaattacttattaatgaaagttaaacctt
tgtcagtagggtgaggacgacagcaacaatattataagcccccagacctt
ataaaacaagtgaaatccatgaactcagttgctcattttgccatagcttc
ctttctgccctcttgagctgaactttgaactcatcattccttgtccctcc
tgagatgagctttgatggtaaagactggagagacaaaagtctggatggct
gctgacagctgattcaaacactgtgcctgtttttatctgagaaatagagt
aaatggtctgctctgtactgttggtatggagacagtaaggcaagtcacag
aaaagacctgcagtcttttctccctctctctctctctctctctctctctc
tctctctctctctctgtccctccctccctccctccgtcccttccttcctt
ccttccttcccttaccttcc

gaattctctgtgcccttctgtcttctctttattattattttgtctcaagt
gactctgatcctcctgtctttattttctctcctgtgtaaagcatcccggt
agatctaagtgtgaggatgcacgacagccggcctgtcagagtggagccaa
acacaagcagggcagcactgttgtggcattttcaacctagcgttgggaat
gagagcagctctgggtgagggatgagaattcacattagtggggatgctgc
cacaggactctcgtggggtctgtggagtgggatacatcactacatttctc
tttcattctcttaaatcctagaccagatttcagtttgtcctttgataatc
tcccttgcctcatagagcaagttttatacccagtgagtctatactcagtg
agcctaggtcaccctgtacagttcttctttcatcgtttggatacttacta
gatttttcactttaaaataaaatggttaataatttctctagtgtatttga
gatttttttcaaaagcatttttttcaatctagtttaatctgtgtttaatt
taatatattaaatcttaatttaatattttataatttgagctaatatattt
aaggtgtattacatcttaattttatatattcaatcaaagtttaataaagt
ttccctttaacatcttgattaaaaggactactgcacagtacttatgtctt
tcaattaaactccaaccactgctgtctcagtgggcttcagcattccatca
aggacttggagcctgaagtccaaaaagaaaaaaaaaaaaaagtgccagca
gaaatatcaagaaaattttgttaccacaatctttttcaatcttttttgat
atagtaattgtttctgtatttggtagcataaaactagctgttgtaaaagg
aattctttaaactctggtgatttatgtcagtagaaattagtaacaaactc
aagcgactaactcttcctgatccaagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149403392_149404109
seq2: B6Ng01-171F14.b_46_765 (reverse)

seq1  GGAAGG--AAGGAAGGAAGGAAGGAAGGAAGGGACGGAGGGAGGGAGGGA  48
      ||||||  | ||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAAGGGAAGGAAGGAAGGAAGGAAGGGACGGAGGGAGGGAGGGA  50

seq1  GGGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGA  100

seq1  GAAAAGACTGCAGGTCTTTTCTGTGACTTGCCTTACTGTCTCCATACCAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACTGCAGGTCTTTTCTGTGACTTGCCTTACTGTCTCCATACCAA  150

seq1  CAGTACAGAGCAGACCATTTACTCTATTTCTCAGATAAAAACAGGCACAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGAGCAGACCATTTACTCTATTTCTCAGATAAAAACAGGCACAG  200

seq1  TGTTTGAATCAGCTGTCAGCAGCCATCCAGACTTTTGTCTCTCCAGTCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAATCAGCTGTCAGCAGCCATCCAGACTTTTGTCTCTCCAGTCTT  250

seq1  TACCATCAAAGCTCATCTCAGGAGGGACAAGGAATGATGAGTTCAAAGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAAAGCTCATCTCAGGAGGGACAAGGAATGATGAGTTCAAAGTT  300

seq1  CAGCTCAAGAGGGCAGAAAGGAAGCTATGGCAAAATGAGCAACTGAGTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAAGAGGGCAGAAAGGAAGCTATGGCAAAATGAGCAACTGAGTTC  350

seq1  ATGGATTTCACTTGTTTTATAAGGTCTGGGGGCTTATAATATTGTTGCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTCACTTGTTTTATAAGGTCTGGGGGCTTATAATATTGTTGCTG  400

seq1  TCGTCCTCACCCTACTGACAAAGGTTTAACTTTCATTAATAAGTAATTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTCACCCTACTGACAAAGGTTTAACTTTCATTAATAAGTAATTAG  450

seq1  TAAATAATAACAGTAGCATGGTTATATTTTTCATCACTGGCCACAATTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATAACAGTAGCATGGTTATATTTTTCATCACTGGCCACAATTGT  500

seq1  AGGACTTTGCACAGGTATCAGGTCATAGCACAACGAGGTGCCATATAAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTGCACAGGTATCAGGTCATAGCACAACGAGGTGCCATATAAGT  550

seq1  CCTGAGGGTTCACCATCAGTTAGAGACTGATGTAGTAATATAGCAGAGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGTTCACCATCAGTTAGAGACTGATGTAGTAATATAGCAGAGCT  600

seq1  TTGGATATCATCCCTCAGGGAAGAGAGTCTTGCTTGTTTCCTCACAGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATCATCCCTCAGGGAAGAGAGTCTTGCTTGTTTCCTCACAGAGA  650

seq1  AGAGCATAGTATTGATCAGATGAGTATTGTTTAGTTGGTTACAAGAGAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAGTATTGATCAGATGAGTATTGTTTAGTTGGTTACAAGAGAAC  700

seq1  ATTTGTGTTAGTTTGAATTC  718
      ||||||||||||||||||||
seq2  ATTTGTGTTAGTTTGAATTC  720


seq1: chr3_149276999_149277977
seq2: B6Ng01-171F14.g_69_1048

seq1  GAATTCTCTGTGCCCTTCTGTCTTCTCTTTATTATTATTTTGTCTCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGCCCTTCTGTCTTCTCTTTATTATTATTTTGTCTCAAGT  50

seq1  GACTCTGATCCTCCTGTCTTTATTTTCTCTCCTGTGTAAAGCATCCCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGATCCTCCTGTCTTTATTTTCTCTCCTGTGTAAAGCATCCCGGT  100

seq1  AGATCTAAGTGTGAGGATGCACGACAGCCGGCCTGTCAGAGTGGAGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAAGTGTGAGGATGCACGACAGCCGGCCTGTCAGAGTGGAGCCAA  150

seq1  ACACAAGCAGGGCAGCACTGTTGTGGCATTTTCAACCTAGCGTTGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCAGGGCAGCACTGTTGTGGCATTTTCAACCTAGCGTTGGGAAT  200

seq1  GAGAGCAGCTCTGGGTGAGGGATGAGAATTCACATTAGTGGGGATGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGCTCTGGGTGAGGGATGAGAATTCACATTAGTGGGGATGCTGC  250

seq1  CACAGGACTCTCGTGGGGTCTGTGGAGTGGGATACATCACTACATTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACTCTCGTGGGGTCTGTGGAGTGGGATACATCACTACATTTCTC  300

seq1  TTTCATTCTCTTAAATCCTAGACCAGATTTCAGTTTGTCCTTTGATAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTCTTAAATCCTAGACCAGATTTCAGTTTGTCCTTTGATAATC  350

seq1  TCCCTTGCCTCATAGAGCAAGTTTTATACCCAGTGAGTCTATACTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCCTCATAGAGCAAGTTTTATACCCAGTGAGTCTATACTCAGTG  400

seq1  AGCCTAGGTCACCCTGTACAGTTCTTCTTTCATCGTTTGGATACTTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGTCACCCTGTACAGTTCTTCTTTCATCGTTTGGATACTTACTA  450

seq1  GATTTTTCACTTTAAAATAAAATGGTTAATAATTTCTCTAGTGTATTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCACTTTAAAATAAAATGGTTAATAATTTCTCTAGTGTATTTGA  500

seq1  GATTTTTTTCAAAAGCATTTTTTTCAATCTAGTTTAATCTGTGTTTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTCAAAAGCATTTTTTTCAATCTAGTTTAATCTGTGTTTAATT  550

seq1  TAATATATTAAATCTTAATTTAATATTTTATAATTTGAGCTAATATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTAAATCTTAATTTAATATTTTATAATTTGAGCTAATATATTT  600

seq1  AAGGTGTATTACATCTTAATTTTATATATTCAATCAAAGTTTAATAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTATTACATCTTAATTTTATATATTCAATCAAAGTTTAATAAAGT  650

seq1  TTCCCTTTAACATCTTGATTAAAAGGACTACTGCACAGTACTTATGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTAACATCTTGATTAAAAGGACTACTGCACAGTACTTATGTCTT  700

seq1  TCAATTAAACTCCAACCACTGCTGTCTCAGTGGGCTTCAGCATTCCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAAACTCCAACCACTGCTGTCTCAGTGGGCTTCAGCATTCCATCA  750

seq1  AGGACTTGGAGCCTGAAGTCCAAAAAG-AAAAAAAAAAAAAGTGCCAGCA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGACTTGGAGCCTGAAGTCCAAAAAGAAAAAAAAAAAAAAGTGCCAGCA  800

seq1  GAAATATCAAG-AAATTTTGTTACCACAATCTTTTTCAATCTTTTTTGAT  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  GAAATATCAAGAAAATTTTGTTACCACAATCTTTTTCAATCTTTTTTGA-  849

seq1  TATAGTAATTG-TTCTGTATTTGGTAGCATAAAACTAGCTGTTGTAAAAG  897
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TATAGTAATTGTTTCTGTATTTGGTAGCATAAAACTAGCTGTTGTAAAA-  898

seq1  GGAATTCTTTAAACTCTGGTGATTTATGTCAGTAGAAATTAGTTACAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GGAATTCTTTAAACTCTGGTGATTTATGTCAGTAGAAATTAGTAACAAAC  948

seq1  TCAAGCGACTAACTCTTCCTGATCCAAGTGTG  979
      ||||||||||||||||||||||||||||||||
seq2  TCAAGCGACTAACTCTTCCTGATCCAAGTGTG  980


| Home | SequenceCutter | Blast | Download |