BAC Information

Click to search

BAC

Clone NameB6Ng01-171F15
Chromosome3 (Build37)
Map Location 95,112,818 - 95,306,964
singlet/doubletdoublet
Overlap geneLass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk
Upstream geneThem4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9
Downstream geneCtss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171F15.bB6Ng01-171F15.g
ACCGA000262GA000263
length1,1141,109
definitionB6Ng01-171F15.b B6Ng01-171F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,112,818 - 95,113,922)(95,305,842 - 95,306,964)
sequence
gaattctttactgtgaatgcgcacaaggaagggagcccaagggagtggtg
ctttcagcttgagctgttctaaggacaacacatgacactcaggcaatcag
ggttgctggcaatgcccattcttactgagctcctttgtttgtgggaaggc
acagggctttattctatagcccagactagccgggaactcatgatgaagcc
caggctggccttgagctcacaattgcctaaccttagcttcaagtgctaag
atttatgggtacgagcctttaaccccggctctgccacttgttacattctg
tagtcttagctagacatttcatcatctctacatgaacagcgtggtacagg
ggctggacagatggttcaatggttaagagcactgactgctcttccagagg
tcctgagttcaatttccagcaactacatggtggctcacaaccatctgtaa
tggaatctaatgccctcttctggtgtgtctgaagacagctacagtgtact
cacatacatgaaataaataaacaagtcttaaaaaagaaaaaagaaagaaa
aaggtgatagaaacttcagggctgaggagacaagaggctggggcatctga
cgtaataaatgaagcaatgtgtgtatggccaatagcagcatagaatcacc
ttgtatattaggggtgatagattaagtaaatgaaaatatacaactctcaa
ttaagttacttcaggtaaacaatgaataatttgttggtataagtatgacc
caaatatttaatgtgattacttctgataacgttatttattgtttacccga
aattcttttctaatggcaatatctcgagttctatctcacaaccgccagat
agggctaaatctctgcactgtggcccgaggctgaacgcctgttggggcta
gacttccccagagtcaaggattctcatttttctgcatggtcttggacaag
gtgcagaacccttcctgtgcttagttttcccttattcagaagtacaagag
acagaaggcaggggcactggagagatggtaagagcacttggctgctcttt
cagaagacctgggtcaagtctcattaccttggtaaatcccgcatgatatt
tacagtcatctaaa
gaattcagggttgtcttcagctacatagtacttttaaggacaacatgggc
tatatgagatcttgtctcaaaaaaagggtggccagcctaggatacctagt
tgatcagtttgggatacagagtaagatattgtctcaaaattaaaaggaaa
aaaaaaatggaaaggagcaggatatgctaacagaaaacaaaaccatgccc
ggggaaggagcagcccacggctacatactacggtggtctcacctggccca
catatgggtaagcatcttcagagtcaatgcctccgttctgctgcacgtat
tggaaggcagtggtcatatagccgcctccacagccataattctcagtcac
acagtccacaagattctggggactcagagctaagagtttaccagttttct
tcttgagttggccctccagggccccggcagagctgaaagcccaacaggaa
ccacactggccctgagaaacatacagaggacctgtcagccatcactcttc
acagagggtgggtctctctgccagcctgagaaaactccacccacaaacac
tcaaccataaagactgtctttgttgtgaagccctgctattgtccccattg
atgacaactgtgaccactgtctcctttaactgaagtcaagtacagtgggg
actttatagctctggcgacagttttcctgaattctaaccctgactttgca
tactagaaacacaatcttgagcagttactgaactctgtgcctcagtttcc
tttaaagtgagaataagttgggcttgctggaacatacatgtaactccatc
acttgagtggtggaggcaacaggtccagaggctaaaggtcaatctcagct
atagactgagttggaggccagcctgggcaagagacctcgtctcaaagaca
agaaagtgagtgatactaaagttgatgagatttcttgtgaacacgagaga
tcttcacttcacgcgagatcagagacactattgatgcacagcaattcctt
cagaactgttcagctactatagatttacttgctgatgcagaattttctct
ttcctgaattctatttagaattggaaatttctgagaatcaggcagcacct
tagacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95112818_95113922
seq2: B6Ng01-171F15.b_40_1153

seq1  GAATTCTTTACTGTGAATGCGCACAAGGAAGGGAGCCCAAGGGAGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTGTGAATGCGCACAAGGAAGGGAGCCCAAGGGAGTGGTG  50

seq1  CTTTCAGCTTGAGCTGTTCTAAGGACAACACATGACACTCAGGCAATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCTTGAGCTGTTCTAAGGACAACACATGACACTCAGGCAATCAG  100

seq1  GGTTGCTGGCAATGCCCATTCTTACTGAGCTCCTTTGTTTGTGGGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGCAATGCCCATTCTTACTGAGCTCCTTTGTTTGTGGGAAGGC  150

seq1  ACAGGGCTTTATTCTATAGCCCAGACTAGCCGGGAACTCATGATGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTTTATTCTATAGCCCAGACTAGCCGGGAACTCATGATGAAGCC  200

seq1  CAGGCTGGCCTTGAGCTCACAATTGCCTAACCTTAGCTTCAAGTGCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTTGAGCTCACAATTGCCTAACCTTAGCTTCAAGTGCTAAG  250

seq1  ATTTATGGGTACGAGCCTTTAACCCCGGCTCTGCCACTTGTTACATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGGTACGAGCCTTTAACCCCGGCTCTGCCACTTGTTACATTCTG  300

seq1  TAGTCTTAGCTAGACATTTCATCATCTCTACATGAACAGCGTGGTACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTAGCTAGACATTTCATCATCTCTACATGAACAGCGTGGTACAGG  350

seq1  GGCTGGACAGATGGTTCAATGGTTAAGAGCACTGACTGCTCTTCCAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGACAGATGGTTCAATGGTTAAGAGCACTGACTGCTCTTCCAGAGG  400

seq1  TCCTGAGTTCAATTTCCAGCAACTACATGGTGGCTCACAACCATCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAATTTCCAGCAACTACATGGTGGCTCACAACCATCTGTAA  450

seq1  TGGAATCTAATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTAATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACT  500

seq1  CACATACATGAAATAAATAAACAAGTCTTAAAAAAGAAAAAAGAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATGAAATAAATAAACAAGTCTTAAAAAAGAAAAAAGAAAGAAA  550

seq1  AAGGTGATAGAAACTTCAGGGCTGAGGAGACAAGAGGCTGGGGCATCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATAGAAACTTCAGGGCTGAGGAGACAAGAGGCTGGGGCATCTGA  600

seq1  CGTAATAAATGAAGCAATGTGTGTATGGCCAATAGCAGCATAGAATCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATAAATGAAGCAATGTGTGTATGGCCAATAGCAGCATAGAATCACC  650

seq1  TTGTATATTAGGGGTGATAGATTAAGTAAATGAAAATATACAACTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTAGGGGTGATAGATTAAGTAAATGAAAATATACAACTCTCAA  700

seq1  TTAAGTTACTTCAGGTAAACAATGAATAATTTGTTGGTATAAGTATGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTACTTCAGGTAAACAATGAATAATTTGTTGGTATAAGTATGACC  750

seq1  CAAATATTTAATGTGATTACTTCTGATAACGTTATTTATTGTTTACCCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTAATGTGATTACTTCTGATAACGTTATTTATTGTTTACCCGA  800

seq1  AATTCTTTTCTAATGGCAATATCTCGAGTTCTATCTCACAACCGCCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTCTAATGGCAATATCTCGAGTTCTATCTCACAACCGCCAGAT  850

seq1  AGGGCTTAATCTCTGCACTGTGG-CCGAGGCTGAACGCCTG-TGGGGCTA  898
      |||||| |||||||||||||||| ||||||||||||||||| ||||||||
seq2  AGGGCTAAATCTCTGCACTGTGGCCCGAGGCTGAACGCCTGTTGGGGCTA  900

seq1  GACTT-CCCAGAGTC-AGGATTCTCA-TTTTCTGCATGGTC-TGGAC-AG  943
      ||||| ||||||||| |||||||||| |||||||||||||| ||||| ||
seq2  GACTTCCCCAGAGTCAAGGATTCTCATTTTTCTGCATGGTCTTGGACAAG  950

seq1  GTGCAGAA-CCTTCCTGTGCTTAG-TTTCCCT--ATCAG-AGAAC-AGAG  987
      |||||||| ||||||||||||||| |||||||   |||| || || ||||
seq2  GTGCAGAACCCTTCCTGTGCTTAGTTTTCCCTTATTCAGAAGTACAAGAG  1000

seq1  ACAGGAGGCAGGGGCACTGGAGAGATGGTTAAGAGCAC-TGGCTGCTCTT  1036
      |||| ||||||||||||||||||||||| ||||||||| |||||||||||
seq2  ACAGAAGGCAGGGGCACTGGAGAGATGG-TAAGAGCACTTGGCTGCTCTT  1049

seq1  TCAGAAGACCTGGGTTCAGTCTCCATTTACCCTGGGTAAATCCCGCATGA  1086
      |||||||||||||||  ||||| ||||   ||| ||||||||||||||||
seq2  TCAGAAGACCTGGGTCAAGTCT-CATT--ACCTTGGTAAATCCCGCATGA  1096

seq1  TTATTTACAGTCATCTAAA  1105
       ||||||||||||||||||
seq2  -TATTTACAGTCATCTAAA  1114

seq1: chr3_95305842_95306964
seq2: B6Ng01-171F15.g_64_1172 (reverse)

seq1  TCAAGATCTAAGGTGCTGCCTTGATCCTCAAGAAATTCTCATTCTTAAAA  50
      ||||| |||||||||||||| |||| ||||  || |||  |||||    |
seq2  TCAAG-TCTAAGGTGCTGCC-TGATTCTCAGAAATTTCCAATTCT----A  44

seq1  ATTAGAAAAATCTCA-GAAAGAGAAAATTCTGCAATCAGGAAAGTAAATC  99
      | |||||     ||| ||||||||||||||||| |||| | |||||||||
seq2  AATAGAA----TTCAGGAAAGAGAAAATTCTGC-ATCA-GCAAGTAAATC  88

seq1  CTAATAGTAGCTGACACTTTCTG-AGAGATTGCTGTGCATCAATAGTGTC  148
         |||||||||||    ||||| ||  ||||||||||||||||||||||
seq2  --TATAGTAGCTGAACAGTTCTGAAGGAATTGCTGTGCATCAATAGTGTC  136

seq1  TCTGATTCTCGCGTG-AGTG-AGATCTCTCGGTGTTCAC-AGAAATCTCA  195
      ||||| ||||||||| |||| ||||||||| |||||||| ||||||||||
seq2  TCTGA-TCTCGCGTGAAGTGAAGATCTCTC-GTGTTCACAAGAAATCTCA  184

seq1  TCAACTTTAGTATCACTCACTTTCTTGTTCTTTTGAGACGAGGTCTCTTG  245
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  TCAACTTTAGTATCACTCACTTTCTTGT--CTTTGAGACGAGGTCTCTTG  232

seq1  CCCAGGCTGGCCTCCAACTCAGTCTATAGCTGAGATTGACCTTTTAGCCT  295
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCAGGCTGGCCTCCAACTCAGTCTATAGCTGAGATTGACC-TTTAGCCT  281

seq1  CTGGACCTGTTGCCTCCACCACTCAAGTGATGGAGTTACATGTATGTTCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTGTTGCCTCCACCACTCAAGTGATGGAGTTACATGTATGTTCC  331

seq1  AGCAAGCCCAACTTATTCTCACTTTAAAGGAAACTGAGGCACAGAGTTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCCAACTTATTCTCACTTTAAAGGAAACTGAGGCACAGAGTTCA  381

seq1  GTAACTGCTCAAGATTGTGTTTCTAGTATGCAAAGTCAGGGTTAGAATTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGCTCAAGATTGTGTTTCTAGTATGCAAAGTCAGGGTTAGAATTC  431

seq1  AGGAAAACTGTCGCCAGAGCTATAAAGTCCCCACTGTACTTGACTTCAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACTGTCGCCAGAGCTATAAAGTCCCCACTGTACTTGACTTCAGT  481

seq1  TAAAGGAGACAGTGGTCACAGTTGTCATCAATGGGGACAATAGCAGGGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGACAGTGGTCACAGTTGTCATCAATGGGGACAATAGCAGGGCT  531

seq1  TCACAACAAAGACAGTCTTTATGGTTGAGTGTTTGTGGGTGGAGTTTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAAAGACAGTCTTTATGGTTGAGTGTTTGTGGGTGGAGTTTTCT  581

seq1  CAGGCTGGCAGAGAGACCCACCCTCTGTGAAGAGTGATGGCTGACAGGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCAGAGAGACCCACCCTCTGTGAAGAGTGATGGCTGACAGGTC  631

seq1  CTCTGTATGTTTCTCAGGGCCAGTGTGGTTCCTGTTGGGCTTTCAGCTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATGTTTCTCAGGGCCAGTGTGGTTCCTGTTGGGCTTTCAGCTCT  681

seq1  GCCGGGGCCCTGGAGGGCCAACTCAAGAAGAAAACTGGTAAACTCTTAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGCCCTGGAGGGCCAACTCAAGAAGAAAACTGGTAAACTCTTAGC  731

seq1  TCTGAGTCCCCAGAATCTTGTGGACTGTGTGACTGAGAATTATGGCTGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCCCCAGAATCTTGTGGACTGTGTGACTGAGAATTATGGCTGTG  781

seq1  GAGGCGGCTATATGACCACTGCCTTCCAATACGTGCAGCAGAACGGAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGCTATATGACCACTGCCTTCCAATACGTGCAGCAGAACGGAGGC  831

seq1  ATTGACTCTGAAGATGCTTACCCATATGTGGGCCAGGTGAGACCACCGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCTGAAGATGCTTACCCATATGTGGGCCAGGTGAGACCACCGTA  881

seq1  GTATGTAGCCGTGGGCTGCTCCTTCCCCGGGCATGGTTTTGTTTTCTGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAGCCGTGGGCTGCTCCTTCCCCGGGCATGGTTTTGTTTTCTGTT  931

seq1  AGCATATCCTGCTCCTTTCCATTTTTTTTTTCCTTTTAATTTTGAGACAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATCCTGCTCCTTTCCATTTTTTTTTTCCTTTTAATTTTGAGACAA  981

seq1  TATCTTACTCTGTATCCCAAACTGATCAACTAGGTATCCTAGGCTGGCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTACTCTGTATCCCAAACTGATCAACTAGGTATCCTAGGCTGGCCA  1031

seq1  CCCTTTTTTTGAGACAAGATCTCATATAGCCCATGTTGTCCTTAAAAGTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTTTGAGACAAGATCTCATATAGCCCATGTTGTCCTTAAAAGTA  1081

seq1  CTATGTAGCTGAAGACAACCCTGAATTC  1123
      ||||||||||||||||||||||||||||
seq2  CTATGTAGCTGAAGACAACCCTGAATTC  1109