BAC Information

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BAC

Clone NameB6Ng01-172H04
Chromosome3 (Build37)
Map Location 65,593,221 - 65,665,356
singlet/doubletdoublet
Overlap genenone
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172H04.bB6Ng01-172H04.g
ACCGA001059GA001060
length1,1951,039
definitionB6Ng01-172H04.b B6Ng01-172H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,593,221 - 65,594,395)(65,664,320 - 65,665,356)
sequence
gaattcaaaaagaatattagaaactcagctttatgaacataaacagccag
tgagcaaaagagttgtgcagacatcttaccaaacaaagctagtcagtaca
taaagaaatgagacatcctatgtctatacatttacccaagagaagtgaac
catacaaacatgcatgggtacagtgactttgtttgtaatagtcaaagtct
gtgatcaatctaagtatccatcagtaaatgactagagaaaatgctgtggt
tgcatttgtacaatggaatactactcggggtaaaaataaatggactaatt
aatgatgcacagtacagcatagataaatttagacataattgtgctgagtt
aaagatgctacaacaaaaaagaacacactatgtttccatccatataggaa
gcatagatatattctaaaaatggaaaatcaacagcaaatacactgtagac
tcacaggaggcaatacaagaaacagtagattacaggggagtggggatggg
gaaatggctatgctctttacactcagttcttaccagacttgaccacttaa
cattgaaatgtgaacagaagttttcaaatatctgttttgatcattcttct
tttctgtctattgcaaaagcaccatcctcaggtaggacttgctcttaaag
ttgggatcctgaaacagtacctgtggaggagaacagcagatggcacattc
tgtgagccaaaaataagcatttgtattgtaggacatgaagattcaggtgt
aaggcctgagaaattatttcaataaaacagcagtcgggtggaaagttggg
tccatgagtcatactcaaatttatctgagctgcagataaaatttaagaat
tgtcagtgcctaactcaaattaggaggtgagtctgcagctgagaaatgtc
cagagaaacaccacacaaacacacacacacacacagacacacacacacag
gcacgagagtgtgtgtgtgtatgtgtgtttgcctgcttgcacctcctgct
tgccacccgggaacttgcccgttaagctttacttcctctgctcagcttag
aagatggcctgtgcatgcagtcagagtccagtgcctcttgcctccaccac
cccaagaacgatttcttattattcttctagaaatttaaaccaccacctgt
agtgacctaatttgcctgtcttccaaggaaccgagagacgtgacc

gaattcctagcacatcttcaaagccagtggcttttcacctaggtagctgc
tgttgctggatgaagcttgtgagtaagggagggttgctggttctcctgga
accgaatggatactgatcgtcttgtcattgatgtcctcgaggcttccttc
ctgcagtgtgaagttctgaatgatgattgatcagacttttgttgcttgga
aagagaaatgaacaagaaagcacagctcagagagttttgttgagtagcca
aagaccagccaggaaggatgctttgagccagaactccctgcctgacgcct
gctccttacccatccatggaaattcttgtcagtaggatggctgacccctg
ttgtgaccctgccctgggctcctgggcaagctcaggtcggtcccagcagg
gccatcagctgactaaggtccaatctccatgtggttccaccacatgggag
ctttccttctttttctaaacattgtgacgggcacctgctgtacctctctc
tccaaaaggtgtttttgtattctgcttctttgtgtttgaattgcatcatc
ctggcttggctgctagcactcagagagtgggaatatgctgtctttatctt
cctgtgcctggaagcacgggttgaatattttagtgagagtaagaggataa
tggaggtgcgtatggacgctcgcccagcctttctcttatattcctttaat
gccacctagtcccctgggataacctgactcccccccacccccccattgtc
cctcatcatgctcagctcctggcgtgcacagggcttgagcctttacttct
tatttagtgtctacattcacctttctacctctgcccagtcatggctgccc
atctgagatgggcgactttcaggggactggggattccacttaatgctttt
tgtcactggaagttgacacagagaggctagatacccggtggacttcagac
ttggtcaagggagtcactaggacctgaattatattatatattattatatt
actattacctattgttaatgaacttcaggctggcctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65593221_65594395
seq2: B6Ng01-172H04.b_39_1225

seq1  AAAGAATATTAGAAACTCAGCTTTATGAACATAAACAGCCAGTGAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATTAGAAACTCAGCTTTATGAACATAAACAGCCAGTGAGCAAA  50

seq1  AGAGTTGTGCAGACATCTTACCAAACAAAGCTAGTCAGTACATAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTGCAGACATCTTACCAAACAAAGCTAGTCAGTACATAAAGAAA  100

seq1  TGAGACATCCTATGTCTATACATTTACCCAAGAGAAGTGAACCATACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCCTATGTCTATACATTTACCCAAGAGAAGTGAACCATACAAA  150

seq1  CATGCATGGGTACAGTGACTTTGTTTGTAATAGTCAAAGTCTGTGATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGGGTACAGTGACTTTGTTTGTAATAGTCAAAGTCTGTGATCAA  200

seq1  TCTAAGTATCCATCAGTAAATGACTAGAGAAAATGCTGTGGTTGCATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTATCCATCAGTAAATGACTAGAGAAAATGCTGTGGTTGCATTTG  250

seq1  TACAATGGAATACTACTCGGGGTAAAAATAAATGGACTAATTAATGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGAATACTACTCGGGGTAAAAATAAATGGACTAATTAATGATGC  300

seq1  ACAGTACAGCATAGATAAATTTAGACATAATTGTGCTGAGTTAAAGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACAGCATAGATAAATTTAGACATAATTGTGCTGAGTTAAAGATGC  350

seq1  TACAACAAAAAAGAACACACTATGTTTCCATCCATATAGGAAGCATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAAAAAAGAACACACTATGTTTCCATCCATATAGGAAGCATAGAT  400

seq1  ATATTCTAAAAATGGAAAATCAACAGCAAATACACTGTAGACTCACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTAAAAATGGAAAATCAACAGCAAATACACTGTAGACTCACAGGA  450

seq1  GGCAATACAAGAAACAGTAGATTACAGGGGAGTGGGGATGGGGAAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATACAAGAAACAGTAGATTACAGGGGAGTGGGGATGGGGAAATGGC  500

seq1  TATGCTCTTTACACTCAGTTCTTACCAGACTTGACCACTTAACATTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTTTACACTCAGTTCTTACCAGACTTGACCACTTAACATTGAAA  550

seq1  TGTGAACAGAAGTTTTCAAATATCTGTTTTGATCATTCTTCTTTTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACAGAAGTTTTCAAATATCTGTTTTGATCATTCTTCTTTTCTGTC  600

seq1  TATTGCAAAAGCACCATCCTCAGGTAGGACTTGCTCTTAAAGTTGGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAAAAGCACCATCCTCAGGTAGGACTTGCTCTTAAAGTTGGGATC  650

seq1  CTGAAACAGTACCTGTGGAGGAGAACAGCAGATGGCACATTCTGTGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAGTACCTGTGGAGGAGAACAGCAGATGGCACATTCTGTGAGCC  700

seq1  AAAAATAAGCATTTGTATTGTAGGACATGAAGATTCAGGTGTAAGGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGCATTTGTATTGTAGGACATGAAGATTCAGGTGTAAGGCCTG  750

seq1  AGAAATTATTTCAATAAAACAGCAGTCGGGTGGAAAGTTGGGTCCATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATTTCAATAAAACAGCAGTCGGGTGGAAAGTTGGGTCCATGAG  800

seq1  TCATACTCAAATTTATCTGAGCTGCAGATAAAATTTAAGAATTGTCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTCAAATTTATCTGAGCTGCAGATAAAATTTAAGAATTGTCAGTG  850

seq1  CCTAACTCAAATTAGGAGGTGAGTCTGCAGCTGAGAAATGTCCAGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTCAAATTAGGAGGTGAGTCTGCAGCTGAGAAATGTCCAGAGAAA  900

seq1  CACCACACAAACACACACACACACACAGACACACACACACAGGCACGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACAAACACACACACACACACAGACACACACACACAGGCACGAGA  950

seq1  GTGTGTGTGTGTATGTGTGTTT-CCTGCTGTCACCT-CTCCTTGCCACCC  998
      |||||||||||||||||||||| ||||||  ||||| || ||||||||||
seq2  GTGTGTGTGTGTATGTGTGTTTGCCTGCTTGCACCTCCTGCTTGCCACCC  1000

seq1  -TGAACTTGCCCGTTTAGCTTTACTTCCTCTGCTCCAGCTTA-AAGATGG  1046
        ||||||||||||| |||||||||||||||||| ||||||| |||||||
seq2  GGGAACTTGCCCGTTAAGCTTTACTTCCTCTGCT-CAGCTTAGAAGATGG  1049

seq1  -CTGTGCATGCAGTCAGAG-CCAGTGCCTC-TGCCTC--ACACCCAAAG-  1090
       |||||||||||||||||| |||||||||| ||||||   ||||| ||| 
seq2  CCTGTGCATGCAGTCAGAGTCCAGTGCCTCTTGCCTCCACCACCCCAAGA  1099

seq1  ACGATTTTCTTATTTAATTC-TCTAG-ACTTTAAACCA-CAACTGTAGTG  1137
      |||| |||||||||  |||| ||||| | ||||||||| || ||||||||
seq2  ACGA-TTTCTTATT--ATTCTTCTAGAAATTTAAACCACCACCTGTAGTG  1146

seq1  A-CTAATTTGCCTGTCT--CCAGGAACAGAGAGCAGTGACC  1175
      | |||||||||||||||  | |||||| |||||  ||||||
seq2  ACCTAATTTGCCTGTCTTCCAAGGAACCGAGAGACGTGACC  1187


seq1: chr3_65664320_65665356
seq2: B6Ng01-172H04.g_63_1101 (reverse)

seq1  TTGAGGCCAGCCTGAAG-TCAATAACAATA-GTAATAGTAATAATAATAA  48
      | ||||||||||||||| ||| |||||||| ||||||||||| |||||||
seq2  TGGAGGCCAGCCTGAAGTTCATTAACAATAGGTAATAGTAAT-ATAATAA  49

seq1  TAATAATAATAATAATTCA-GTCCTAGTGACTCCCTTTGACAAGTCTGAA  97
      ||   ||||| |||||||| |||||||||||||||||   ||||||||||
seq2  TA--TATAAT-ATAATTCAGGTCCTAGTGACTCCCTTGACCAAGTCTGAA  96

seq1  GTCCACCGGGTATCTAGCCTCTCTGTGTC-ACTTCCAGTGACAAAAAGCA  146
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCCACCGGGTATCTAGCCTCTCTGTGTCAACTTCCAGTGACAAAAAGCA  146

seq1  TTAAGTGGAAT-CCCAGTCCCCTGAAAGTCGCCCATCTCAGATGGGCAGC  195
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGGAATCCCCAGTCCCCTGAAAGTCGCCCATCTCAGATGGGCAGC  196

seq1  CATGACTGGGCAGAGGTAGAAAGGTG-ATGTAGACACTAAATAAGAAGTA  244
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGACTGGGCAGAGGTAGAAAGGTGAATGTAGACACTAAATAAGAAGTA  246

seq1  AAGGCTCAAGCCCTGTGCACGCCAGGAGCTGAGCATGATGAGGGACAATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAAGCCCTGTGCACGCCAGGAGCTGAGCATGATGAGGGACAATG  296

seq1  GGGGGGTGGGGGGGAGTCAGGTTATCCCAGGGGACTAGGTGGCATTAAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGGGGGGGAGTCAGGTTATCCCAGGGGACTAGGTGGCATTAAAG  346

seq1  GAATATAAGAGAAAGGCTGGGCGAGCGTCCATACGCACCTCCATTATCCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAGAGAAAGGCTGGGCGAGCGTCCATACGCACCTCCATTATCCT  396

seq1  CTTACTCTCACTAAAATATTCAACCCGTGCTTCCAGGCACAGGAAGATAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTCACTAAAATATTCAACCCGTGCTTCCAGGCACAGGAAGATAA  446

seq1  AGACAGCATATTCCCACTCTCTGAGTGCTAGCAGCCAAGCCAGGATGATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATATTCCCACTCTCTGAGTGCTAGCAGCCAAGCCAGGATGATG  496

seq1  CAATTCAAACACAAAGAAGCAGAATACAAAAACACCTTTTGGAGAGAGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAAACACAAAGAAGCAGAATACAAAAACACCTTTTGGAGAGAGAG  546

seq1  GTACAGCAGGTGCCCGTCACAATGTTTAGAAAAAGAAGGAAAGCTCCCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCAGGTGCCCGTCACAATGTTTAGAAAAAGAAGGAAAGCTCCCAT  596

seq1  GTGGTGGAACCACATGGAGATTGGACCTTAGTCAGCTGATGGCCCTGCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAACCACATGGAGATTGGACCTTAGTCAGCTGATGGCCCTGCTG  646

seq1  GGACCGACCTGAGCTTGCCCAGGAGCCCAGGGCAGGGTCACAACAGGGGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGACCTGAGCTTGCCCAGGAGCCCAGGGCAGGGTCACAACAGGGGT  696

seq1  CAGCCATCCTACTGACAAGAATTTCCATGGATGGGTAAGGAGCAGGCGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCCTACTGACAAGAATTTCCATGGATGGGTAAGGAGCAGGCGTC  746

seq1  AGGCAGGGAGTTCTGGCTCAAAGCATCCTTCCTGGCTGGTCTTTGGCTAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGAGTTCTGGCTCAAAGCATCCTTCCTGGCTGGTCTTTGGCTAC  796

seq1  TCAACAAAACTCTCTGAGCTGTGCTTTCTTGTTCATTTCTCTTTCCAAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAACTCTCTGAGCTGTGCTTTCTTGTTCATTTCTCTTTCCAAGC  846

seq1  AACAAAAGTCTGATCAATCATCATTCAGAACTTCACACTGCAGGAAGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGTCTGATCAATCATCATTCAGAACTTCACACTGCAGGAAGGAA  896

seq1  GCCTCGAGGACATCAATGACAAGACGATCAGTATCCATTCGGTTCCAGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAGGACATCAATGACAAGACGATCAGTATCCATTCGGTTCCAGGA  946

seq1  GAACCAGCAACCCTCCCTTACTCACAAGCTTCATCCAGCAACAGCAGCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGCAACCCTCCCTTACTCACAAGCTTCATCCAGCAACAGCAGCTA  996

seq1  CCTAGGTGAAAAGCCACTGGCTTTGAAGATGTGCTAGGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTGAAAAGCCACTGGCTTTGAAGATGTGCTAGGAATTC  1039


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