BAC Information

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BAC

Clone NameB6Ng01-173P12
Chromosome3 (Build37)
Map Location 82,386,349 - 82,606,821
singlet/doubletdoublet
Overlap geneLOC100041940
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
Downstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173P12.bB6Ng01-173P12.g
ACCGA002172GA002173
length9041,177
definitionB6Ng01-173P12.b B6Ng01-173P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,605,916 - 82,606,821)(82,386,349 - 82,387,498)
sequence
ggaattcctgtgatgccccctaaagtcatcattcatatctctgcatcata
caatgtaccagaaatgctcaaagtagagcaggggagatgtggggagcagg
tgtggcggcagtcccaaaggcgccagggactgcagctaagtcatatgact
tgcacctgacttcctcatataagacacaaacatcttgagtgctgcgcagg
tgtaccaggatacaggtgaatccaatttggtggagatttgcccctgctgc
cctgattagctgaagcctcatgactggcgagggggcgtggcctgcggatg
agagagagtataaaaggagtgagaggcccagggttcgggggagatataaa
caagaagaatcaggactgaataaactgctgttagaaggactggtggtcgc
gtcgttcttgctggtcgagagcgggcgcgacagggagatggtgtgcgatg
ccatgaaggacttagcacagaagttaagtcagcaggaagctctacttctt
gtacctttcatgtgttctttgtgttcctctgcactgtcagtgatcagttc
tgagagcgtggtattaatttttcaatttcttccttgaatgcaaccaactt
cacccactcacttataagtctagacaaagtctttcacttctttttcagtg
gtcagaaaactttggattactcatgttctctttctgctgttctgtggaac
atgtagttactgtttcaggcttgattgctttaagcactcacagtacaggt
ttgatttttagattaccagatgtgcccctctatttatgttgttccccctc
atacttctgcacattgcgtttaatttgaatttgcctaggtaaatgcacag
ggactcatgacttgtgaaattgttaagtatgacgctgtctttttgtgtgg
tgtg
gaattcagagcaaagaaataaagaactgaggagttgatgttcaagaacag
ctgatacacaaggggagtaaatcagcccccagcaaatgcagaagggttgt
caagacactcaactgaatgtgattctgttttgtaatgtcagtcactggaa
ggtagggtggccacacgcattgtcatccacacaggcctcttctggaggtg
aaatgaagtgctgaagttcaacaattggcaataagaaattgtcccgggta
tactgacaagctaaaaccagtgatacctagcctatcacactgcccttcaa
ggatatgtggtcactaactccagagttgccagaggccctctactgcacaa
agagagtccacttgagagtgagtccagggcaagtaaacaacaaggcgagt
gatggagtaagagagatgaagtctgatgatgttgctctctgtgcttgctt
gcaggacacatagggttggttcacccctatgaagcctattcttttcttct
gtaaactgtttcagttctaaccgatgtaatttggcacacacacagaaagc
aaatatacatcctttctcagacaggacacccaagagcaactagcaaccaa
gtatcttcattttgacactatgtttgagaacatactcttaacaaaacctc
aaaaatcattatactatagatgttataatcgaccatcttctcatgacagt
ccagcaattacaaatgatacaagatgatatttctttcagctagtaattct
gagaaaaatgagactgaaacccagatgacaggtatttttaaaaagtactc
ttctttctaattctaagaaatcaattgggtttcaattccatgtccatatg
acagaacaccacgtggggcctatcttgcagtgccctcaactcattcagct
ttacaagattgggcctctttgggtttctttctttctttcctttctttccg
tgctatcattccttcattcattccgtgcttcttctttccttcctttcctt
ttttggaaggtaactgcagaatgttagaacctttcatccccctttttttg
cttgttgaataggtattcttatcacatatatgaagagcttggatcctgac
accaataaataaccgttatattatgaacttcacatgtgaactccaccata
atctggtctatcctacgtcattgaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82605916_82606821
seq2: B6Ng01-173P12.b_45_947 (reverse)

seq1  CACACACACACACAAAAGACAGCGTCATACTTAACAATTTCACAAGTCAT  50
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  CACAC-CACACA-AAAAGACAGCGTCATACTTAACAATTTCACAAGTCAT  48

seq1  GAGTCCCTGTGCATTTTACCTAGGCAAATTC-AATTAAACGCAATGTGCA  99
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  GAGTCCCTGTGCA-TTTACCTAGGCAAATTCAAATTAAACGCAATGTGCA  97

seq1  GAAAGTATGAGGGGGAACAACATAAATAGAGGGGCACATCTGGTAATCTA  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAGTATGAGGGGGAACAACATAAATAGAGGGGCACATCTGGTAATCTA  146

seq1  AAAATCAAACCTGTACTGTGAGTGCTTAAAGCAATCAAGCCTGAAACAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAACCTGTACTGTGAGTGCTTAAAGCAATCAAGCCTGAAACAGT  196

seq1  AACTACATGTTCCACAGAACAGCAGAAAGAGAACATGAGTAATCCAAAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATGTTCCACAGAACAGCAGAAAGAGAACATGAGTAATCCAAAGT  246

seq1  TTTCTGACCACTGAAAAAGAAGTGAAAGACTTTGTCTAGACTTATAAGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACCACTGAAAAAGAAGTGAAAGACTTTGTCTAGACTTATAAGTG  296

seq1  AGTGGGTGAAGTTGGTTGCATTCAAGGAAGAAATTGAAAAATTAATACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGAAGTTGGTTGCATTCAAGGAAGAAATTGAAAAATTAATACCA  346

seq1  CGCTCTCAGAACTGATCACTGACAGTGCAGAGGAACACAAAGAACACATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTCAGAACTGATCACTGACAGTGCAGAGGAACACAAAGAACACATG  396

seq1  AAAGGTACAAGAAGTAGAGCTTCCTGCTGACTTAACTTCTGTGCTAAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACAAGAAGTAGAGCTTCCTGCTGACTTAACTTCTGTGCTAAGTC  446

seq1  CTTCATGGCATCGCACACCATCTCCCTGTCGCGCCCGCTCTCGACCAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGCATCGCACACCATCTCCCTGTCGCGCCCGCTCTCGACCAGCA  496

seq1  AGAACGACGCGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTCCTGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGACGCGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTCCTGAT  546

seq1  TCTTCTTGTTTATATCTCCCCCGAACCCTGGGCCTCTCACTCCTTTTATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTTTATATCTCCCCCGAACCCTGGGCCTCTCACTCCTTTTATA  596

seq1  CTCTCTCTCATCCGCAGGCCACGCCCCCTCGCCAGTCATGAGGCTTCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCATCCGCAGGCCACGCCCCCTCGCCAGTCATGAGGCTTCAGC  646

seq1  TAATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGTATC  696

seq1  CTGGTACACCTGCGCAGCACTCAAGATGTTTGTGTCTTATATGAGGAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACACCTGCGCAGCACTCAAGATGTTTGTGTCTTATATGAGGAAGT  746

seq1  CAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCCTTTGGGACTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCCTTTGGGACTG  796

seq1  CCGCCACACCTGCTCCCCACATCTCCCCTGCTCTACTTTGAGCATTTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCACACCTGCTCCCCACATCTCCCCTGCTCTACTTTGAGCATTTCTG  846

seq1  GTACATTGTATGATGCAGAGATATGAATGATGACTTTAGGGGGCATCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTGTATGATGCAGAGATATGAATGATGACTTTAGGGGGCATCACA  896

seq1  GGAATTC  906
      |||||||
seq2  GGAATTC  903

seq1: chr3_82386349_82387498
seq2: B6Ng01-173P12.g_68_1244

seq1  GAATTCAGAGCAAAGAAATAAAGAACTGAGGAGTTGATGTTCAAGAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCAAAGAAATAAAGAACTGAGGAGTTGATGTTCAAGAACAG  50

seq1  CTGATACACAAGGGGAGTAAATCAGCCCCCAGCAAATGCAGAAGGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACACAAGGGGAGTAAATCAGCCCCCAGCAAATGCAGAAGGGTTGT  100

seq1  CAAGACACTCAACTGAATGTGATTCTGTTTTGTAATGTCAGTCACTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACACTCAACTGAATGTGATTCTGTTTTGTAATGTCAGTCACTGGAA  150

seq1  GGTAGGGTGGCCACACGCATTGTCATCCACACAGGCCTCTTCTGGAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTGGCCACACGCATTGTCATCCACACAGGCCTCTTCTGGAGGTG  200

seq1  AAATGAAGTGCTGAAGTTCAACAATTGGCAATAAGAAATTGTCCCGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGTGCTGAAGTTCAACAATTGGCAATAAGAAATTGTCCCGGGTA  250

seq1  TACTGACAAGCTAAAACCAGTGATACCTAGCCTATCACACTGCCCTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACAAGCTAAAACCAGTGATACCTAGCCTATCACACTGCCCTTCAA  300

seq1  GGATATGTGGTCACTAACTCCAGAGTTGCCAGAGGCCCTCTACTGCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTGGTCACTAACTCCAGAGTTGCCAGAGGCCCTCTACTGCACAA  350

seq1  AGAGAGTCCACTTGAGAGTGAGTCCAGGGCAAGTAAACAACAAGGCGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCCACTTGAGAGTGAGTCCAGGGCAAGTAAACAACAAGGCGAGT  400

seq1  GATGGAGTAAGAGAGATGAAGTCTGATGATGTTGCTCTCTGTGCTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTAAGAGAGATGAAGTCTGATGATGTTGCTCTCTGTGCTTGCTT  450

seq1  GCAGGACACATAGGGTTGGTTCACCCCTATGAAGCCTATTCTTTTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACACATAGGGTTGGTTCACCCCTATGAAGCCTATTCTTTTCTTCT  500

seq1  GTAAACTGTTTCAGTTCTAACCGATGTAATTTGGCACACACACAGAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTGTTTCAGTTCTAACCGATGTAATTTGGCACACACACAGAAAGC  550

seq1  AAATATACATCCTTTCTCAGACAGGACACCCAAGAGCAACTAGCAACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACATCCTTTCTCAGACAGGACACCCAAGAGCAACTAGCAACCAA  600

seq1  GTATCTTCATTTTGACACTATGTTTGAGAACATACTCTTAACAAAACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTCATTTTGACACTATGTTTGAGAACATACTCTTAACAAAACCTC  650

seq1  AAAAATCATTATACTATAGATGTTATAATCGACCATCTTCTCATGACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCATTATACTATAGATGTTATAATCGACCATCTTCTCATGACAGT  700

seq1  CCAGCAATTACAAATGATACAAGATGATATTTCTTTCAGCTAGTAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATTACAAATGATACAAGATGATATTTCTTTCAGCTAGTAATTCT  750

seq1  GAGAAAAATGAGACTGAAACCCAGATGACAGGTATTTTTAAAAAGTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAATGAGACTGAAACCCAGATGACAGGTATTTTTAAAAAGTACTC  800

seq1  TTCTTTCTAATTCTAAGAAATCAATT-GGTTTCAATTCCATGTCCATATG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTTTCTAATTCTAAGAAATCAATTGGGTTTCAATTCCATGTCCATATG  850

seq1  ACAG-ACACCACGT-GGGCCTATCTTGCAGTG-CCTC-ACTCATTCAGCT  895
      |||| ||||||||| ||||||||||||||||| |||| ||||||||||||
seq2  ACAGAACACCACGTGGGGCCTATCTTGCAGTGCCCTCAACTCATTCAGCT  900

seq1  TTAC-AGATT-GGCCTCTTT-GGTTTCTTTCTTTCTTT-CTTTCTTT-CT  940
      |||| ||||| ||||||||| ||||||||||||||||| |||||||| | 
seq2  TTACAAGATTGGGCCTCTTTGGGTTTCTTTCTTTCTTTCCTTTCTTTCCG  950

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  990
      | || || ||| ||| ||| |||  |  |||||  || ||| ||||| ||
seq2  TGCTATCATTCCTTCATTCATTCCGTGCTTCTTCTTTCCTTCCTTTCCTT  1000

seq1  TTTTG--ATGTTACTGCAG-ATGTTAGA--CTTTCATCCCC--TTTTTTG  1033
      |||||  | || ||||||| ||||||||  |||||||||||  |||||||
seq2  TTTTGGAAGGTAACTGCAGAATGTTAGAACCTTTCATCCCCCTTTTTTTG  1050

seq1  -TTGTTGAATA-GTATTC-TATCACATATATGAAGAG-TTTGAACCTGAC  1079
       |||||||||| |||||| |||||||||||||||||| || || ||||||
seq2  CTTGTTGAATAGGTATTCTTATCACATATATGAAGAGCTTGGATCCTGAC  1100

seq1  A-CAATATATA---CTTATA-TATGAACTTCACATGTG-ACTCCAC--TA  1121
      | ||||| |||    ||||| ||||||||||||||||| |||||||  ||
seq2  ACCAATAAATAACCGTTATATTATGAACTTCACATGTGAACTCCACCATA  1150

seq1  ATCT-GTCTAATCTTACGTTCCATTGAAAC  1150
      |||| |||| ||| |||||  |||||||||
seq2  ATCTGGTCT-ATCCTACGT--CATTGAAAC  1177