BAC Information

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BAC

Clone NameB6Ng01-174J16
Chromosome3 (Build37)
Map Location 54,920,063 - 55,096,704
singlet/doubletdoublet
Overlap geneSpg20, A730037C10Rik, Sohlh2, Dclk1
Upstream geneTrpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik
Downstream geneMab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174J16.bB6Ng01-174J16.g
ACCGA002642GA002643
length879525
definitionB6Ng01-174J16.b B6Ng01-174J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,095,838 - 55,096,704)(54,920,063 - 54,920,586)
sequence
gaattctctttggtataacgggctgtattctacatggaaagggaaagtta
acagtttgtaaagtagggaaaggaaaaaaaaataaagcaggaaacatacc
tacataaaagtgtgtgtgatttcatggcagatttgaggtgtttgcctata
atcttagcactctggatacagaatctaaggttgaaggcaaatttgggctg
catagtgagttcctggctagccagggctaagtagcaaggtcctgttttga
ataaaacaaagaaaaatgaaacaaaatgtatgttcttaaagtgagggaag
gataagtattgagaaaaatatgttgatagaataaaacaaagttaatgaac
agtctataaaacacacacacacacacacacacacacacacacacacacac
cccgctacctctgggggggaaaaatcagaattctatactctgattattaa
aaaaatatatatatatggctataaaatagccaaatatgctaagcctgtaa
gagcattctgttcttactttcccggcagtaaatgatctggctgactgcac
ccagggaagccatgataaatttctctgtctagttgaaatacccctgtgct
gtgcgtagcttggccggccacagtgacttggtgccaagttctaaacaaga
ggtcatataaatcaatccctaaactcttttacacaaagccacaatgaaag
acagtttgagtattgggtctctaaataagtttaactcggctttgggggaa
gtagggagaacactaaaaatgtagctttttacagtttccaaactaaaact
ctttggttgttggttgctgctgttgttgttgtttttttttttttttttaa
tctgattttaaaatttaatttttatgtgt
tcagcttgggattccactcaccacgtgagagggtaggaagtgtgtaagac
actgtcctgaagcctgcctggcgcggcagcccgctcgctctccagcctct
gtcacagctgttgaaacctgggaatttgtgcttctggtttttggatttat
ctgttctctgtgagttaatccccttactcttctgtccgtcatttttctct
attctgcatttcggagcattttagaactcacattgggctttctaaaagaa
tgtccgcattttattcttatttcctgttgttccttcatttcattgctctt
cattctgggcattttctctaactttataaactctctatccaagctatttt
atgtgtaatttctaaaagctgaatatgttcccccccttagggcacatgta
tatctttgttttatggatattctattgcccccccccctctggtgtatgca
tgcgttggagaccagaggtcagtgggtggtgatgttcatcaggggttggt
caccatgtggtttgtttttggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55095838_55096704
seq2: B6Ng01-174J16.b_45_923 (reverse)

seq1  ACACATAAAAA-TAAATCTTAAAATCAGATT-AAAAAAAAAAAAAAAACA  48
      ||||||||||| ||||| ||||||||||||| ||||||||||||||||||
seq2  ACACATAAAAATTAAATTTTAAAATCAGATTAAAAAAAAAAAAAAAAACA  50

seq1  ACAACAACAGCAGCAA-CAACAACC-AAGAG-TTTAGTTTGGAAACTGT-  94
      |||||||||||||||| |||||||| ||||| ||||||||||||||||| 
seq2  ACAACAACAGCAGCAACCAACAACCAAAGAGTTTTAGTTTGGAAACTGTA  100

seq1  AAAAGCTACA-TTTTAGTGTTCT-CCTACTT-CCCCAAAGCCGAGTTAAA  141
      |||||||||| |||||||||||| ||||||| ||||||||||||||||||
seq2  AAAAGCTACATTTTTAGTGTTCTCCCTACTTCCCCCAAAGCCGAGTTAAA  150

seq1  CTTATTTAGAGACCCAATACTCAAACTGTC-TTCATTGTGGCTTTGTGT-  189
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  CTTATTTAGAGACCCAATACTCAAACTGTCTTTCATTGTGGCTTTGTGTA  200

seq1  AAAGAGTTTA-GGATTGATTTATATGACCTCTTGTTTAGAACTTGGCACC  238
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTTAGGGATTGATTTATATGACCTCTTGTTTAGAACTTGGCACC  250

seq1  AAGTCACTGTGGCCGGCCAAGCTACGCACAGCACAGGGGTATTTCAACTA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTGTGGCCGGCCAAGCTACGCACAGCACAGGGGTATTTCAACTA  300

seq1  GACAGAGAAATTTATCATGGCTTCCCTGGGTGCAGTCAGCCAGATCATTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAAATTTATCATGGCTTCCCTGGGTGCAGTCAGCCAGATCATTT  350

seq1  ACTGCCGGGAAAGTAAGAACAGAATGCTCTTACAGGCTTAGCATATTTGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCGGGAAAGTAAGAACAGAATGCTCTTACAGGCTTAGCATATTTGG  400

seq1  CTATTTTATAGCCATATATATATATTTTTTTAATAATCAGAGTATAGAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTATAGCCATATATATATATTTTTTTAATAATCAGAGTATAGAAT  450

seq1  TCTGATTTTTCCCCCCCAGAGGTAGCGGGGTGTGTGTGTGTGTGTGTGTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTTTCCCCCCCAGAGGTAGCGGGGTGTGTGTGTGTGTGTGTGTG  500

seq1  TGTGTGTGTGTGTGTGTGTTTTATAGACTGTTCATTAACTTTGTTTTATT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTTTTATAGACTGTTCATTAACTTTGTTTTATT  550

seq1  CTATCAACATATTTTTCTCAATACTTATCCTTCCCTCACTTTAAGAACAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACATATTTTTCTCAATACTTATCCTTCCCTCACTTTAAGAACAT  600

seq1  ACATTTTGTTTCATTTTTCTTTGTTTTATTCAAAACAGGACCTTGCTACT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTTTCATTTTTCTTTGTTTTATTCAAAACAGGACCTTGCTACT  650

seq1  TAGCCCTGGCTAGCCAGGAACTCACTATGCAGCCCAAATTTGCCTTCAAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTAGCCAGGAACTCACTATGCAGCCCAAATTTGCCTTCAAC  700

seq1  CTTAGATTCTGTATCCAGAGTGCTAAGATTATAGGCAAACACCTCAAATC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTCTGTATCCAGAGTGCTAAGATTATAGGCAAACACCTCAAATC  750

seq1  TGCCATGAAATCACACACACTTTTATGTAGGTATGTTTCCTGCTTTATTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGAAATCACACACACTTTTATGTAGGTATGTTTCCTGCTTTATTT  800

seq1  TTTTTTCCTTTCCCTACTTTACAAACTGTTAACTTTCCCTTTCCATGTAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTTTCCCTACTTTACAAACTGTTAACTTTCCCTTTCCATGTAG  850

seq1  AATACAGCCCGTTATACCAAAGAGAATTC  867
      |||||||||||||||||||||||||||||
seq2  AATACAGCCCGTTATACCAAAGAGAATTC  879

seq1: chr3_54920063_54920586
seq2: B6Ng01-174J16.g_82_606

seq1  TCAGCTTGGGATTCCACTCACCACGTGAGAGGGTAGGAAGTGTGTAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGGGATTCCACTCACCACGTGAGAGGGTAGGAAGTGTGTAAGAC  50

seq1  ACTGTCCTGAAGCCTGCCTGGCGCGGCAGCCCGCTCGCTCTCCAGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTGAAGCCTGCCTGGCGCGGCAGCCCGCTCGCTCTCCAGCCTCT  100

seq1  GTCACAGCTGTTGAAACCTGGGAATTTGTGCTTCTGGTTTTTGGATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCTGTTGAAACCTGGGAATTTGTGCTTCTGGTTTTTGGATTTAT  150

seq1  CTGTTCTCTGTGAGTTAATCCCCTTACTCTTCTGTCCGTCATTTTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTGTGAGTTAATCCCCTTACTCTTCTGTCCGTCATTTTTCTCT  200

seq1  ATTCTGCATTTCGGAGCATTTTAGAACTCACATTGGGCTTTCTAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCATTTCGGAGCATTTTAGAACTCACATTGGGCTTTCTAAAAGAA  250

seq1  TGTCCGCATTTTATTCTTATTTCCTGTTGTTCCTTCATTTCATTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGCATTTTATTCTTATTTCCTGTTGTTCCTTCATTTCATTGCTCTT  300

seq1  CATTCTGGGCATTTTCTCTAACTTTATAAACTCTCTATCCAAGCTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGGCATTTTCTCTAACTTTATAAACTCTCTATCCAAGCTATTTT  350

seq1  ATGTGTAATTTCTAAAAGCTGAATATGTTCCCCCCCTTAGGGCACATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAATTTCTAAAAGCTGAATATGTTCCCCCCCTTAGGGCACATGTA  400

seq1  TATCTTTGTTTTATGGATATTCTATTGCCCCCCCCCCTCTGGTGTATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGTTTTATGGATATTCTATTGCCCCCCCCCCTCTGGTGTATGCA  450

seq1  TGCGTTGGAGACCAGAGGTCAGTGGGTGGTGATGTTCATCAGGGGTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTGGAGACCAGAGGTCAGTGGGTGGTGATGTTCATCAGGGGTTGGT  500

seq1  CACCATGTGGTTTG-GTTTGGTTTG  524
      ||||||||||||||  |||||||||
seq2  CACCATGTGGTTTGTTTTTGGTTTG  525