BAC Information

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BAC

Clone NameB6Ng01-175K17
Chromosome3 (Build37)
Map Location 138,294,799 - 138,445,063
singlet/doubletdoublet
Overlap geneTspan5
Upstream geneLOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
Downstream geneLOC620771, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175K17.bB6Ng01-175K17.g
ACCGA003413GA003414
length872667
definitionB6Ng01-175K17.b B6Ng01-175K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,294,799 - 138,295,675)(138,444,397 - 138,445,063)
sequence
gaattccaattcttataaaaaaagatatttattgttaatgaatatatatg
ctatgaaagtaaagataaaccagaaagagttaataacaaaagttagcata
gcaagctaaccacctctctctttctctctctctctccctctccccctctc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctgagttaactgctggcaggtatactggaaaca
tgggcaattggttttgttttaccttgtagattatcagaagaatttatttc
attctcatttatattgcttatgttcttcctaaagtgttttatgtccaaat
tcttccttatctctcccccagccaccccacctttttgatttcttgaaata
gggtctcactctatagcccagtctggcctcaaatttacaacatgcttcct
gctttcagccgcaagtgtcagactacaggggtgagccaccacgactgtga
aagatctcctttttataaggacatcaaccatattggcagagaaccttcac
tttttttttttttaatcctgataaccttgtaaagactgttcccaagcaag
ggtgcattctatccccttaaagttactggagattaagaatttagtataac
attttttttggaggggggagtaaaactcaagccataacaatgttgtgttt
gttttaattgtgttgactttgagatttctttggggctctggagtagatgg
cttgaagcctgaatctgtctggcagtggacaggcacggaggactcaagtg
ttcaagtgacatccgtgaggacagagatggtaactgagtgtttggggtag
gtagaagagatctgggaacaga
gaattctggttcttggagctctaaaagccctgagagaagtgtgaacaccc
tgaagtccgactgctgtgaaggcatctcagctacacgtaggccccagggc
agaagtgctgagtgtcacctcaagtcctgccagtgcagacacacacctgg
aactgcccccgccccctccccagtgtcctcatcttcccatcaaggctcta
taccagagagaggggtcacccaactgccctgcctggcctcctgacccaca
caatctgtaaaggaaaggtggctgtttgacccgtgcttcgtcacacggtg
gcaggtcacccacacagtgctgcatgtgaccaagaggcagcagtcttaca
ctgagaggtcgcacaggggacagtatcctgcagtgtgacactgggcctgc
actctaagggtgaagagacttccatcagtcggaacagcgaatcaggctgt
ggacacaaaccagctgcctggcagaggaatcaggcaagcagaggccatga
tgtcagaccataaggggttgagccgctcagatgtctgaagttcacggagg
gagggttcaactgttttctatgtctttatgtctttacgtccttcttattt
ttgctctttgactttgaacttgcgctgtcactctgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138294799_138295675
seq2: B6Ng01-175K17.b_53_923

seq1  GAATTCCAATTCTTATAAAAAAAGATATTTATTGTTAATGAATATATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTCTTATAAAAAAAGATATTTATTGTTAATGAATATATATG  50

seq1  CTATGAAAGTAAAGATAAACCAGAAAGAGTTAATAACAAAAGTTAGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAGTAAAGATAAACCAGAAAGAGTTAATAACAAAAGTTAGCATA  100

seq1  GCAAGCTAACCACCTCTCTCTTTCTCTCTCTCTCTCCCTCTCCCCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GCAAGCTAACCACCTCTCTCTTTCTCTCTCTCTCTCCCTCTCCCCCTC--  148

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  200
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  196

seq1  TCTTTCTTTCTTTCTTTCTTTCTGAGTTAACTGCTGGCAGGTATACTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTGAGTTAACTGCTGGCAGGTATACTGGA  246

seq1  AACATGGGCAATTGGTTTTGTTTTACCTTGTAGATTATCAGAAGAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGCAATTGGTTTTGTTTTACCTTGTAGATTATCAGAAGAATTTA  296

seq1  TTTCATTCTCATTTATATTGCTTATGTTCTTCCTAAAGTGTTTTATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTCATTTATATTGCTTATGTTCTTCCTAAAGTGTTTTATGTCC  346

seq1  AAATTCTTCCTTATCTCTCCCCCAGCCACCCCACCTTTTTGATTTCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCCTTATCTCTCCCCCAGCCACCCCACCTTTTTGATTTCTTGA  396

seq1  AATAGGGTCTCACTCTATAGCCCAGTCTGGCCTCAAATTTACAACATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGTCTCACTCTATAGCCCAGTCTGGCCTCAAATTTACAACATGCT  446

seq1  TCCTGCTTTCAGCCGCAAGTGTCAGACTACAGGGGTGAGCCACCACGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTTCAGCCGCAAGTGTCAGACTACAGGGGTGAGCCACCACGACT  496

seq1  GTGAAAGATCTCCTTTTTATAAGGACATCAACCATATTGGCAGAGAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGATCTCCTTTTTATAAGGACATCAACCATATTGGCAGAGAACCT  546

seq1  TCACTTTTTTTTTTTTTAATCCTGATAACCTTGTAAAGACTGTTCCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTTTTTTTTTTAATCCTGATAACCTTGTAAAGACTGTTCCCAAG  596

seq1  CAAGGGTGCATTCTATCCCCTTAAAGTTACTGGAGATTAAGAATTTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTGCATTCTATCCCCTTAAAGTTACTGGAGATTAAGAATTTAGTA  646

seq1  TAACATTTTTTTTGGAGGGGGGAGTAAAACTCAAGCCATAACAATGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTTTTTGGAGGGGGGAGTAAAACTCAAGCCATAACAATGTTGT  696

seq1  GTTTGTTTTAATTGTGTTGACTTTGAGATTTCTTTTGGGGCTCTGGAGTA  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTTGTTTTAATTGTGTTGACTTTGAGATTTC-TTTGGGGCTCTGGAGTA  745

seq1  GATGGCTTGAAGCCTGAATCTGTCTGGCAGTGGACAGGCACGGAGGACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTGAAGCCTGAATCTGTCTGGCAGTGGACAGGCACGGAGGACTC  795

seq1  AAGTGTTCAGGTGACATCCGTGAGGACAGAGATGGTAACTGAGTGTTTGG  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCAAGTGACATCCGTGAGGACAGAGATGGTAACTGAGTGTTTGG  845

seq1  GGTAGGTAGAAGAAGATCTGGGAACAG  877
      |||||||||||| ||||||||||||||
seq2  GGTAGGTAGAAG-AGATCTGGGAACAG  871

seq1: chr3_138444397_138445063
seq2: B6Ng01-175K17.g_59_725 (reverse)

seq1  CACACACACACACACACACACACACACACACACAGAGTGACAGCGCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGAGTGACAGCGCAAGT  50

seq1  TCAAAGTCAAAGAGCAAAAATAAGAAGGACGTAAAGACATAAAGACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCAAAGAGCAAAAATAAGAAGGACGTAAAGACATAAAGACATAG  100

seq1  AAAACAGTTGAACCCTCCCTCCGTGAACTTCAGACATCTGAGCGGCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTTGAACCCTCCCTCCGTGAACTTCAGACATCTGAGCGGCTCAA  150

seq1  CCCCTTATGGTCTGACATCATGGCCTCTGCTTGCCTGATTCCTCTGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTATGGTCTGACATCATGGCCTCTGCTTGCCTGATTCCTCTGCCAG  200

seq1  GCAGCTGGTTTGTGTCCACAGCCTGATTCGCTGTTCCGACTGATGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGTTTGTGTCCACAGCCTGATTCGCTGTTCCGACTGATGGAAGT  250

seq1  CTCTTCACCCTTAGAGTGCAGGCCCAGTGTCACACTGCAGGATACTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACCCTTAGAGTGCAGGCCCAGTGTCACACTGCAGGATACTGTCC  300

seq1  CCTGTGCGACCTCTCAGTGTAAGACTGCTGCCTCTTGGTCACATGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCGACCTCTCAGTGTAAGACTGCTGCCTCTTGGTCACATGCAGCA  350

seq1  CTGTGTGGGTGACCTGCCACCGTGTGACGAAGCACGGGTCAAACAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGGTGACCTGCCACCGTGTGACGAAGCACGGGTCAAACAGCCAC  400

seq1  CTTTCCTTTACAGATTGTGTGGGTCAGGAGGCCAGGCAGGGCAGTTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTACAGATTGTGTGGGTCAGGAGGCCAGGCAGGGCAGTTGGGT  450

seq1  GACCCCTCTCTCTGGTATAGAGCCTTGATGGGAAGATGAGGACACTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTCTCTCTGGTATAGAGCCTTGATGGGAAGATGAGGACACTGGGG  500

seq1  AGGGGGCGGGGGCAGTTCCAGGTGTGTGTCTGCACTGGCAGGACTTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCGGGGGCAGTTCCAGGTGTGTGTCTGCACTGGCAGGACTTGAGG  550

seq1  TGACACTCAGCACTTCTGCCCTGGGGCCTACGTGTAGCTGAGATGCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCAGCACTTCTGCCCTGGGGCCTACGTGTAGCTGAGATGCCTTC  600

seq1  ACAGCAGTCGGACTTCAGGGTGTTCACACTTCTCTCAGGGCTTTTAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTCGGACTTCAGGGTGTTCACACTTCTCTCAGGGCTTTTAGAGC  650

seq1  TCCAAGAACCAGAATTC  667
      |||||||||||||||||
seq2  TCCAAGAACCAGAATTC  667