BAC Information

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BAC

Clone NameB6Ng01-175M06
Chromosome3 (Build37)
Map Location 141,068,786 - 141,069,473
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621343, 4930590L14Rik, Pdha2
Downstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175M06.bB6Ng01-175M06.g
ACCGA003483GA003484
length1,1321,190
definitionB6Ng01-175M06.b B6Ng01-175M06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaactgagaaatatcaaatggctgagaagcacctaaagaaatg
ttcaacatctttagtcatcaaggaaatgcaaatcaaaacaaccctgagat
tcctccacacaccagtcagaatggctaaaataaaaaaactcaggtgacag
aagatgctggcaagaatatggagaaagaggaacactccttcattgctcgt
gggaatgcaagctggtacaaccactctggaaatcagtttggtggttccta
agaaaattaaacatagtattacatgagaacccagctataccactcctggg
catatatataggaaatgctccaacatgtagtcaggacacatgttccacta
tgttcataaaagccttatttataatagccaggagctggaaagaacccaga
tgtcttcaacagagtaatggatacagaaaatgtggtacatttacacaata
gactactactcagctattaaaaacaatgaattcataaaattcttaggcaa
atggatagaactagaaaatatcattctgattgaggtaacccaattgggaa
agaacacacatggtatgtactcactgataagtgaatatcagccccaaagc
tccaaataagcagattacaattcacagaccacatgaagctcaagaaggaa
gaccaaagtgtgggtgctttggtccttcttagaaggagaacaaaatactt
acaggagcaaatatggagataaagtttagagcagagactaaaggaaaggc
cacccggagattattgcacctggggattcattccatatacagttaccaaa
cccagacactattgtggatgccaagaattgcatgctgaaagaagtagtct
ttaaaattgcaacctacaataaacttctccttcctcatgaagatctgtca
gatatatctggtcacagtaatgagaaaattaactaacaaaacagatgaaa
tacactgaagccatgcttctatatttacttcattttactaagcctaggct
ggggtcatatttctccatagcaactgatatttctcaatttctttctgaat
aatggcctatcctgttcaatttatcctgttttctcttgggtattgtgttt
tgctatgcatgtcttatctatatctcaatcta

gaattctctgtttatctctgtacccaatttttaaattgggatatgtgttt
ttttttggaattcttgagctctttgtatattttagatattagccctctat
tggacgtaagttgttattttgtccaattaacagtatcctttgccttacaa
aatcttttccacttcatgaggcagcatttgtcaattattgatcttagagc
cttagtcactggtgttctgttcagaaaatctagattcttctatatgcaca
atggtagttagagcagcaccatttgttgaagatgcttttttcccactgta
tggtcttggcttctttgtcaaaggtcaagtgtccatagctttatggcctt
atttctgggtcttcagttctaatacgtttattgacttgtctgtctctgta
gcagtaccatgcagtttttatcatgattgcttggtgtatcgcttgtggtc
agggatactgattccttggacattcttttattgttgagaattgtttttgc
tattctgggatttttatttttcaacacgagtttgaaaattgctaaatcta
aacatctccagacacaaaacatctagaaaatatgagactctatgaaaaga
caagtgtaaggatagtagttatagataaatgagaagaaatgcagctcaaa
ggtccagaaaattattttaataaaattatagaggaaatttactagcctag
tgaaggagacgcctaagaagtaaaagaagaaaacagaatgccaaatagat
tggaacatataagaaagtaccctggctacataaaaatcaaaacactacac
ataactaacaagagaggaatattataagctgcaatggaaattgaccaagt
aacataaaggcagacctattaatttacacctgatttctcaatggagactc
taaaagccagaagagcctgaatagatctgcttcagactctaagagacaca
gaagtgagtccaaactactataatccagtaaaactttagatgaccttaga
ataggagaaaaatagattttccatgataagttaaactaaataacatttat
ccacaatcagccctacgaatgtgctaaagaatcagctttagagtttataa
ttagtgagagcagaggtagtagcagctccaccatgaattctaataggagc
cttaccttcgacttgccccactcgaatattacccttttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141068786_141069473
seq2: B6Ng01-175M06.b_491_1181

seq1  TACACAATAGACTACTACTCAGCTATTAAAAACAATGAATTCATAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATAGACTACTACTCAGCTATTAAAAACAATGAATTCATAAAATT  50

seq1  CTTAGGCAAATGGATAGAACTAGAAAATATCATTCTGATTGAGGTAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCAAATGGATAGAACTAGAAAATATCATTCTGATTGAGGTAACCC  100

seq1  AATTGGGAAAGAACACACATGGTATGTACTCACTGATAAGTGAATATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAAAGAACACACATGGTATGTACTCACTGATAAGTGAATATCAG  150

seq1  CCCCAAAGCTCCAAATAAGCAGATTACAATTCACAGACCACATGAAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGCTCCAAATAAGCAGATTACAATTCACAGACCACATGAAGCTC  200

seq1  AAGAAGGAAGACCAAAGTGTGGGTGCTTTGGTCCTTCTTAGAAGGAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAGACCAAAGTGTGGGTGCTTTGGTCCTTCTTAGAAGGAGAAC  250

seq1  AAAATACTTACAGGAGCAAATATGGAGATAAAGTTTAGAGCAGAGACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTACAGGAGCAAATATGGAGATAAAGTTTAGAGCAGAGACTAA  300

seq1  AGGAAAGGCCACCCGGAGATTATTGCACCTGGGGATTCATTCCATATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGCCACCCGGAGATTATTGCACCTGGGGATTCATTCCATATACA  350

seq1  GTTACCAAACCCAGACACTATTGTGGATGCCAAGAATTGCATGCTGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAAACCCAGACACTATTGTGGATGCCAAGAATTGCATGCTGAAAG  400

seq1  AAGTAGTCTTTAAAATTGCAACCTACAATAAACTTCTCCTTCCTCATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTCTTTAAAATTGCAACCTACAATAAACTTCTCCTTCCTCATGAA  450

seq1  GATCTGTCAGATATATCTGGTCACAGTAATGAGAAAATTAACTAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCAGATATATCTGGTCACAGTAATGAGAAAATTAACTAACAAAA  500

seq1  CAGATGAAATACACTGAAGCCATGCTTCTATATTTACTTCATTTTACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAATACACTGAAGCCATGCTTCTATATTTACTTCATTTTACTAA  550

seq1  GCCTAGGCTGGGGTCATA-TTCTCCATAGCAACTGATATTTCTCAATTTC  599
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCTAGGCTGGGGTCATATTTCTCCATAGCAACTGATATTTCTCAATTTC  600

seq1  TTTCTG-ATAATTGGCTATCCTGTTC-ATATATCCTGTTTTCTC-TGGTT  646
      |||||| ||||| | ||||||||||| || |||||||||||||| ||| |
seq2  TTTCTGAATAATGGCCTATCCTGTTCAATTTATCCTGTTTTCTCTTGGGT  650

seq1  ATGTTGTTTTGCTATGCATGTCTTATCTATATCTCAAATCTA  688
      ||  ||||||||||||||||||||||||||||||| ||||||
seq2  ATTGTGTTTTGCTATGCATGTCTTATCTATATCTC-AATCTA  691


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