BAC Information

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BAC

Clone NameB6Ng01-175O10
Chromosome3 (Build37)
Map Location 148,224,228 - 148,343,575
singlet/doubletdoublet
Overlap geneLOC100040354
Upstream genenone
Downstream geneLphn2, LOC100040368, LOC668893, EG381483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175O10.bB6Ng01-175O10.g
ACCGA003582GA003583
length1,212980
definitionB6Ng01-175O10.b B6Ng01-175O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,224,228 - 148,225,419)(148,342,587 - 148,343,575)
sequence
gaattcccaaatgcaatagatttttggttactaataattgagcctggatg
catgcccacaaattaaagataacttgcgcctgtatcccattactaattct
tttaacaagccttcctgtgagcatttttcacttcttaaccttttggttac
tgacactacattcaccacaataaccccgcggaacacatttcaggctcatt
tctggctaagcgcttggcatgcagctgtttagtgggataccctggttgtg
cctgaggttttcttgttcttgccagttttgagtattcacatctgggttga
caatcagaggttaatatatgtccatctacatcaagagtgtgtaaaatgac
aacctgactgtacattcagaaaccgtggggacttcctgtttattcagttg
gatacgtcaaaatatgggtttggagttaattttgtatgaaaagccagcag
ttgagtcatgacatgaatcagtgacagacagtctgtcagtccagacctga
tggtacaggtctataattccagctgttagaaaggctgatgcaggagattt
caaggtctaaatctgcctggactacagaatgagttcaaggccagcttaga
gagaccatttcaaaaacaaaacaaaacaaaacaccctaaaaactaaaaac
cataatctggagaagcagcttagcagtcaagaccttgtaaggctgtaggt
tctgtttggggcacgtgcagaaggggtgaggcacttttccttattttatc
cagagagaatatatcccaagactcagaatagatgcctaaagctcttaaca
cagatagtacaaaatctacatatcgtacaaaatcaatatattgctttatt
tctatgtaaacacacatattttttataacatttttacttataaattaggt
acagtaagagattaattagtagataataaaacagcagtttatatatgaca
ataccaataagagttaaggtatatgcgggtctttttttgttttttttggt
ttttttcctcaaaacatctaccccaccccttttttaagaagaacaaggac
gtgagcctccctgaacaccatgcactctgcagccctgttcctggagaagc
ctacatgaagagcatcacctgcaccttccttgtgttacctaagtaaacta
aacctcaccgggaacctaaccccgaaactttattggagttgatctcttag
gatgagaagggc

gaattccctaatgcatgcagtttcttctatttatgagaacagaatttttc
tgttttgtattttttaagacttttataggtagagccatgcaaatctttgt
tttatattaagatatatatggatacaagactacagagagatgaatagcag
agccctgtgttactagagtgagtaggctttctggaaggctgtcatttgct
agctatgtgaccttggggtattatcgttttgtgcctgtttattcatctga
aaaaaaagtgggtggtggcataacaatttttttttctcagtaatgttaca
aagtctaaatactgaaatgtacgtcaagttcctagaacacacagtcaata
cttagtaaatactggctattacaaacatgactcattgtgaatgatttaaa
tatagctactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgttgaggc
ttagaattacaaagtgctaaatcaggaaaataatattagcgctcgtattc
catacattcatctctcccagttttaataatatatccaataactatctatg
ttcagcaatagagtgttcagtcatagagataatggtgtcaggtataaatg
gcacaattaaaaacactacgggagctaacttactccgaaagttgcaatgc
gaatattcctttcctaagagcctcatggatgcacagcgagggagcatgag
agcatcttattttattccctgatgggaatctatccacatcatatatacag
catccttctgctggcgggcaacctctgctgagactcccggcctcatcatc
ccggcctttttagagacggagatagctgggcatttgattttcaattttta
aggagtcaatacaattataagtgtaagttaaaaggggaaagattaccatg
tggtttcttagagatatttttgggctatggtctagttaagaactactaat
aattacacacatatattggaagctaagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148224228_148225419
seq2: B6Ng01-175O10.b_46_1257

seq1  GAATTCCCAAATGCAATAGATTTTTGGTTACTAATAATTGAGCCTGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAATGCAATAGATTTTTGGTTACTAATAATTGAGCCTGGATG  50

seq1  CATGCCCACAAATTAAAGATAACTTGCGCCTGTATCCCATTACTAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCACAAATTAAAGATAACTTGCGCCTGTATCCCATTACTAATTCT  100

seq1  TTTAACAAGCCTTCCTGTGAGCATTTTTCACTTCTTAACCTTTTGGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAAGCCTTCCTGTGAGCATTTTTCACTTCTTAACCTTTTGGTTAC  150

seq1  TGACACTACATTCACCACAATAACCCCGCGGAACACATTTCAGGCTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTACATTCACCACAATAACCCCGCGGAACACATTTCAGGCTCATT  200

seq1  TCTGGCTAAGCGCTTGGCATGCAGCTGTTTAGTGGGATACCCTGGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTAAGCGCTTGGCATGCAGCTGTTTAGTGGGATACCCTGGTTGTG  250

seq1  CCTGAGGTTTTCTTGTTCTTGCCAGTTTTGAGTATTCACATCTGGGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTTTTCTTGTTCTTGCCAGTTTTGAGTATTCACATCTGGGTTGA  300

seq1  CAATCAGAGGTTAATATATGTCCATCTACATCAAGAGTGTGTAAAATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGAGGTTAATATATGTCCATCTACATCAAGAGTGTGTAAAATGAC  350

seq1  AACCTGACTGTACATTCAGAAACCGTGGGGACTTCCTGTTTATTCAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACTGTACATTCAGAAACCGTGGGGACTTCCTGTTTATTCAGTTG  400

seq1  GATACGTCAAAATATGGGTTTGGAGTTAATTTTGTATGAAAAGCCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGTCAAAATATGGGTTTGGAGTTAATTTTGTATGAAAAGCCAGCAG  450

seq1  TTGAGTCATGACATGAATCAGTGACAGACAGTCTGTCAGTCCAGACCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCATGACATGAATCAGTGACAGACAGTCTGTCAGTCCAGACCTGA  500

seq1  TGGTACAGGTCTATAATTCCAGCTGTTAGAAAGGCTGATGCAGGAGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGGTCTATAATTCCAGCTGTTAGAAAGGCTGATGCAGGAGATTT  550

seq1  CAAGGTCTAAATCTGCCTGGACTACAGAATGAGTTCAAGGCCAGCTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTAAATCTGCCTGGACTACAGAATGAGTTCAAGGCCAGCTTAGA  600

seq1  GAGACCATTTCAAAAACAAAACAAAACAAAACACCCTAAAAACTAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATTTCAAAAACAAAACAAAACAAAACACCCTAAAAACTAAAAAC  650

seq1  CATAATCTGGAGAAGCAGCTTAGCAGTCAAGACCTTGTAAGGCTGTAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTGGAGAAGCAGCTTAGCAGTCAAGACCTTGTAAGGCTGTAGGT  700

seq1  TCTGTTTGGGGCACGTGCAGAAGGGGTGAGGCACTTTTCCTTATTTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGGGGCACGTGCAGAAGGGGTGAGGCACTTTTCCTTATTTTATC  750

seq1  CAGAGAGAATATATCCCAAGACTCAGAATAGATGCCTAAAGCTCTTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAATATATCCCAAGACTCAGAATAGATGCCTAAAGCTCTTAACA  800

seq1  CAGATAGTACAAAATCTACATATCGTACAAAATCAATATATTGCTTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTACAAAATCTACATATCGTACAAAATCAATATATTGCTTTATT  850

seq1  TCTATGTAAACACACATA-TTTTTATAACA-TTTTACTTATAAATTAGGT  898
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  TCTATGTAAACACACATATTTTTTATAACATTTTTACTTATAAATTAGGT  900

seq1  ACAGTAAGAGATTAA-TAGTAGATAATAAAACAGCAGTTTATATATGACA  947
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGAGATTAATTAGTAGATAATAAAACAGCAGTTTATATATGACA  950

seq1  ATA-CAATAAGAGTT-AGGTATATGC-GGTC-TTTTTTGTTTTTTTTG--  991
      ||| ||||||||||| |||||||||| |||| ||||||||||||||||  
seq2  ATACCAATAAGAGTTAAGGTATATGCGGGTCTTTTTTTGTTTTTTTTGGT  1000

seq1  TTTTTTTCTCAAAACATCTACCC--ACCTTTTTTTAAGAAGA--CAGGAC  1037
      |||||| ||||||||||||||||   || |||||||||||||   |||||
seq2  TTTTTTCCTCAAAACATCTACCCCACCCCTTTTTTAAGAAGAACAAGGAC  1050

seq1  GTGAGCCTCCCTG-ACA-CATGCACTCTGCAG-CCTGTTCCTGGAAGAG-  1083
      ||||||||||||| ||| |||||||||||||| ||||||||||||  || 
seq2  GTGAGCCTCCCTGAACACCATGCACTCTGCAGCCCTGTTCCTGGAGAAGC  1100

seq1  CTACATTGAGAGCATCACTTGCA-CTTCCTGTTGTTA-CTAAGTAAACTA  1131
      ||||||  |||||||||| |||| ||||||  ||||| ||||||||||||
seq2  CTACATGAAGAGCATCACCTGCACCTTCCTTGTGTTACCTAAGTAAACTA  1150

seq1  AACCTCA-CGGGAACACAAACACGAGATGTTATTGGAGTTGATCTTAAAG  1180
      ||||||| |||||||  || | ||| |  ||||||||||||||||   ||
seq2  AACCTCACCGGGAACCTAACCCCGAAACTTTATTGGAGTTGATCTCTTAG  1200

seq1  GATGAGAAGGGC  1192
      ||||||||||||
seq2  GATGAGAAGGGC  1212


seq1: chr3_148342587_148343575
seq2: B6Ng01-175O10.g_63_1042 (reverse)

seq1  GAGCTTAGC-TCCAA-ATATGTGT-TAA-TATTAGTAGTCTTAAACTAGA  46
      ||||||||| ||||| |||||||| ||| ||||||||||  | |||||||
seq2  GAGCTTAGCTTCCAATATATGTGTGTAATTATTAGTAGTTCTTAACTAGA  50

seq1  -CATAGCCC-AAAATATCTCTAAG-AACCACATGGT-ATCCTTCCCCTTT  92
       |||||||| |||||||||||||| ||||||||||| ||| |||||||||
seq2  CCATAGCCCAAAAATATCTCTAAGAAACCACATGGTAATCTTTCCCCTTT  100

seq1  TAACTTACACTTATAA-TGTATTGACTCCTTAAAAATTG-AAATC-AATG  139
      |||||||||||||||| |||||||||||||||||||||| ||||| ||||
seq2  TAACTTACACTTATAATTGTATTGACTCCTTAAAAATTGAAAATCAAATG  150

seq1  CCCAGCTATCTCCGTCTCT-AAAAGGCCGGGATGATGAGGCCGGGAGTCT  188
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCAGCTATCTCCGTCTCTAAAAAGGCCGGGATGATGAGGCCGGGAGTCT  200

seq1  CAGCAGAGGTTGCCCGCCAGCAGAAGGATGCTGTATATTTGATGTGGATA  238
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGCAGAGGTTGCCCGCCAGCAGAAGGATGCTGTATATATGATGTGGATA  250

seq1  GATTCCCATCAGGGAATAAAATAAGATGCTCTCATGCTCCCTCGCTGTGC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCATCAGGGAATAAAATAAGATGCTCTCATGCTCCCTCGCTGTGC  300

seq1  ATCCATGAGGCTCTTAGG-AAGGAATATTCGCATTGCAACTTTCGGAGTA  337
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCCATGAGGCTCTTAGGAAAGGAATATTCGCATTGCAACTTTCGGAGTA  350

seq1  AGTTAGCTCCCGTAGTGTTTTTAATTGTGCCATTTATACCTGACACCATT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCTCCCGTAGTGTTTTTAATTGTGCCATTTATACCTGACACCATT  400

seq1  ATCTCTATGACTGAACACTCTATTGCTGAACATAGATAGTTATTGGATAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATGACTGAACACTCTATTGCTGAACATAGATAGTTATTGGATAT  450

seq1  ATTATTAAAACTGGGAGAGATGAATGTATGGAATACGAGCGCTAATATTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAAACTGGGAGAGATGAATGTATGGAATACGAGCGCTAATATTA  500

seq1  TTTTCCTGATTTAGCACTTTGTAATTCTAAGCCTCAACATGCACACACAC  537
      |||||||||||||||||||||||||||||||||||||||||         
seq2  TTTTCCTGATTTAGCACTTTGTAATTCTAAGCCTCAACATG---------  541

seq1  ACACACACACACACACACACACACACACACACACACACACACAGTAGCTA  587
                   |||||||||||||||||||||||||||||||||||||
seq2  -------------CACACACACACACACACACACACACACACAGTAGCTA  578

seq1  TATTTAAATCATTCACAATGAGTCATGTTTGTAATAGCCAGTATTTACTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATCATTCACAATGAGTCATGTTTGTAATAGCCAGTATTTACTA  628

seq1  AGTATTGACTGTGTGTTCTAGGAACTTGACGTACATTTCAGTATTTAGAC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGACTGTGTGTTCTAGGAACTTGACGTACATTTCAGTATTTAGAC  678

seq1  TTTGTAACATTACTGAGAAAAAAAAATTGTTATGCCACCACCCACTTTTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACATTACTGAGAAAAAAAAATTGTTATGCCACCACCCACTTTTT  728

seq1  TTTCAGATGAATAAACAGGCACAAAACGATAATACCCCAAGGTCACATAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATGAATAAACAGGCACAAAACGATAATACCCCAAGGTCACATAG  778

seq1  CTAGCAAATGACAGCCTTCCAGAAAGCCTACTCACTCTAGTAACACAGGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAATGACAGCCTTCCAGAAAGCCTACTCACTCTAGTAACACAGGG  828

seq1  CTCTGCTATTCATCTCTCTGTAGTCTTGTATCCATATATATCTTAATATA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTATTCATCTCTCTGTAGTCTTGTATCCATATATATCTTAATATA  878

seq1  AAACAAAGATTTGCATGGCTCTACCTATAAAAGTCTTAAAAAATACAAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGATTTGCATGGCTCTACCTATAAAAGTCTTAAAAAATACAAAA  928

seq1  CAGAAAAATTCTGTTCTCATAAATAGAAGAAACTGCATGCATTAGGGAAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATTCTGTTCTCATAAATAGAAGAAACTGCATGCATTAGGGAAT  978

seq1  TC  989
      ||
seq2  TC  980


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