BAC Information

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BAC

Clone NameB6Ng01-176A15
Chromosome1 (Build37)3 (Build37)
Map Location 43,192,542 - 43,193,59785,545,649 - 85,546,082
singlet/doubletsingletsinglet
Overlap geneFhl2
Upstream geneLOC666582, 2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479
Downstream geneEG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176A15.bB6Ng01-176A15.g
ACCGA003684GA003685
length1,063990
definitionB6Ng01-176A15.b B6Ng01-176A15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,192,542 - 43,193,597)(85,545,649 - 85,546,082)
sequence
gaattctcaagaccaactcagagaaagcttgtagtcccgtgaactctgga
tgagtcaatgcacatggcctccagtgtacaaagggacatgagtgtgttaa
gctcccatcagcaatatcacttctatattcaaagtaactccgattgtcag
ggttcacttaactacgcactgacaaaggacagtcctgcagaccatgacct
ccctgtgaggtgagcagaccaaggcccacctagctcctggccacacctag
ggcataaagcaaagagcacttaggttcttggtccagcaccatggactata
tagggatgccctgttgaggtagctcccagaactgctcttatatcctgtta
gagaggctatgtgtgcttgcaacagcaaaagacctctgcaactcttctgt
cctccatttcccagctatgtcccagaacccaagtgaaggaaatgagttac
gctgcagagtgagcttccttgtccatgtgttctgcacccgtgcaggtgta
atatactaagacacaaaaacccctcatatgtggagctgacccagctgctc
tctgcagacccaagtcctccctctgtacctttatctcccagggcctgcct
gtctgctcacaggcaggaaatgtcctagcgctggttgactaggcataaag
gatagggaaaactggaggagctgggggcataggaatcacacagaagagag
tggagcacttcagaggtgaatgaacaaagccaaaaaaagggagaacagaa
gcagcagtaggtagaccctggggctgggctacagcagtatgaatggttgg
ctacaactctggagctaactaagctactatgtagctgcgtggctgggctg
cagctgtgtagctaggctgcagctgtgtggctgggctgcagctgttgtgg
ctgggctgcagctgtgtggctgggctgcagctgtgtggctggctgcagct
gtgtggctggctgcagctgtgtagctgggctgcacttgtgtgactggcca
gcaacctgtgtgcctggctgcagctgtgtagcctgggcctgccagctgtg
tggcctggctgca
gaattctcactacgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgttgattttatatcctatagttgctgaaacttttatcacttctaagaat
tttctgtcagtctttagagtctcttaagtatagggtcacatcatctgtac
atagggataaattggcttattccttttctatttaaattcccttccacttt
tttatctcttttcttattactctggctaaagcatcaatagctatattgaa
taatagtgaagaaagtggacatgtttgtctctttactaatttaggaaaaa
tacttttaagtttttccccacttgggacaatattggcgataagtttgtca
tgcataccctttattatgttaatgaaaattagctctggtcctagattttt
cagggtttttattattaattttgttaaaggtcatttctttatctattgag
ataatcatttattgtgcatttttgcattatgttcatcagggagattatcc
tataattttgtttctttgttgtaaccttgtcctgattttgtattggagta
aattctggttttgtaaaatgagtttcataggtatattactaacttgtctc
actgctatgaccaaatatctgaaaaaacaatgtaaagtaaagtccctcat
ggagagaaaattgagacagttgttcacattgtctctatagtcagatcaga
gagtaatgaacaatggtgctcaactattaatatatgctagaactctggcc
acggaacttgccacccacgcttagggtgggtcctttcagctcaagtgacc
aaatctagaaactccctcagagatatgcccaaaggtttgtttcatgggag
attctaaatcctaaaatgtcaatcaagattaggtgccccagcttttcttc
aatttccacctggaggagtagtttgaggatagttgtattatttttcttta
acagtcttggaaaatttagcagggaacccacttctgaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43192542_43193597
seq2: B6Ng01-176A15.b_32_1094

seq1  GAATTCTCAAGACCAACTCAGAGAAAGCTTGTAGTCCCGTGAACTCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGACCAACTCAGAGAAAGCTTGTAGTCCCGTGAACTCTGGA  50

seq1  TGAGTCAATGCACATGGCCTCCAGTGTACAAAGGGACATGAGTGTGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAATGCACATGGCCTCCAGTGTACAAAGGGACATGAGTGTGTTAA  100

seq1  GCTCCCATCAGCAATATCACTTCTATATTCAAAGTAACTCCGATTGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATCAGCAATATCACTTCTATATTCAAAGTAACTCCGATTGTCAG  150

seq1  GGTTCACTTAACTACGCACTGACAAAGGACAGTCCTGCAGACCATGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACTTAACTACGCACTGACAAAGGACAGTCCTGCAGACCATGACCT  200

seq1  CCCTGTGAGGTGAGCAGACCAAGGCCCACCTAGCTCCTGGCCACACCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGAGGTGAGCAGACCAAGGCCCACCTAGCTCCTGGCCACACCTAG  250

seq1  GGCATAAAGCAAAGAGCACTTAGGTTCTTGGTCCAGCACCATGGACTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAAGCAAAGAGCACTTAGGTTCTTGGTCCAGCACCATGGACTATA  300

seq1  TAGGGATGCCCTGTTGAGGTAGCTCCCAGAACTGCTCTTATATCCTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATGCCCTGTTGAGGTAGCTCCCAGAACTGCTCTTATATCCTGTTA  350

seq1  GAGAGGCTATGTGTGCTTGCAACAGCAAAAGACCTCTGCAACTCTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTATGTGTGCTTGCAACAGCAAAAGACCTCTGCAACTCTTCTGT  400

seq1  CCTCCATTTCCCAGCTATGTCCCAGAACCCAAGTGAAGGAAATGAGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTTCCCAGCTATGTCCCAGAACCCAAGTGAAGGAAATGAGTTAC  450

seq1  GCTGCAGAGTGAGCTTCCTTGTCCATGTGTTCTGCACCCGTGCAGGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGAGTGAGCTTCCTTGTCCATGTGTTCTGCACCCGTGCAGGTGTA  500

seq1  ATATACTAAGACACAAAAACCCCTCATATGTGGAGCTGACCCAGCTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTAAGACACAAAAACCCCTCATATGTGGAGCTGACCCAGCTGCTC  550

seq1  TCTGCAGACCCAAGTCCTCCCTCTGTACCTTTATCTCCCAGGGCCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGACCCAAGTCCTCCCTCTGTACCTTTATCTCCCAGGGCCTGCCT  600

seq1  GTCTGCTCACAGGCAGGAAATGTCCTAGCGCTGGTTGACTAGGCATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTCACAGGCAGGAAATGTCCTAGCGCTGGTTGACTAGGCATAAAG  650

seq1  GATAGGGAAAACTGGAGGAGCTGGGGGCATAGGAATCACACAGAAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGAAAACTGGAGGAGCTGGGGGCATAGGAATCACACAGAAGAGAG  700

seq1  TGGAGCACTTCAGAGGTGAATGAACAAAGCCAAAAAAAGGGAGAACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCACTTCAGAGGTGAATGAACAAAGCCAAAAAAAGGGAGAACAGAA  750

seq1  GCAGCAGTAGGTAGACCCTGGGGCTGGGCTACAGCAGTATGAATGGTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTAGGTAGACCCTGGGGCTGGGCTACAGCAGTATGAATGGTTGG  800

seq1  CTACAACTCTGGAGCTAACTAAGCTACTATGTAGCTGCGTGGCTGGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACTCTGGAGCTAACTAAGCTACTATGTAGCTGCGTGGCTGGGCTG  850

seq1  CAGCTGTGTAGCTAGGCTGCAGCTGTGTGGCTGGGCTGCAGCTG-TGTGG  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGCTGTGTAGCTAGGCTGCAGCTGTGTGGCTGGGCTGCAGCTGTTGTGG  900

seq1  CTGGGCTGCAGCTGTGTGGCTGGGCTGCAGCTGTGTGGCTGGCTGCAGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGCAGCTGTGTGGCTGGGCTGCAGCTGTGTGGCTGGCTGCAGCT  950

seq1  GTGTGGCTGGCTGCAGCTGTGTAGCTGGGCTGCAGCTGTGTGACTGG-CA  998
      ||||||||||||||||||||||||||||||||||  ||||||||||| ||
seq2  GTGTGGCTGGCTGCAGCTGTGTAGCTGGGCTGCACTTGTGTGACTGGCCA  1000

seq1  GC-AGCTGTGTGGCTGGCTGCAGCTGTGTAG-CTGGG-CTG-CAGCTGTG  1044
      || | ||||||| |||||||||||||||||| ||||| ||| ||||||||
seq2  GCAACCTGTGTGCCTGGCTGCAGCTGTGTAGCCTGGGCCTGCCAGCTGTG  1050

seq1  TGG-CTGGCTGCA  1056
      ||| |||||||||
seq2  TGGCCTGGCTGCA  1063

seq1: chr3_85545649_85546082
seq2: B6Ng01-176A15.g_81_290 (reverse)

seq1  CAGAGTAATAAGAAAACTGCACATCAACAGTCACAAGAAAAAATAGTTTC  50
      ||||||||||||||||                   ||| |||| |||   
seq2  CAGAGTAATAAGAAAA------------------GAGATAAAAAAGT---  29

seq1  TTGACCCATGGGTGAGCTTCAGAGGCTACAGCCCAGGGAATAAAGGGTTT  100
                             ||         ||||||       |||
seq2  -----------------------GG--------AAGGGAA-------TTT  41

seq1  GCTGAGCAAATGGGAAT-AGTCAAGTTCAGATCCCAAGCCTACAGAAGAG  149
          || |||  ||||| || ||| ||   ||||| |   |||||| || 
seq2  AAATAGAAAA--GGAATAAGCCAATTT---ATCCCTA-TGTACAGATGAT  85

seq1  CTTGGTTGGTGCGGTGCCTATCCATCCCAGCATTCAGGAAGCAAAGATGA  199
       |           |  ||||| | |                     | ||
seq2  GT-----------GACCCTATACTT---------------------AAGA  103

seq1  GAATCCTTACTGCAAGCTGGCCAGCTAGATTAGCCACAAGAGTAGTGTCT  249
      || ||                         ||     |||          
seq2  GACTC-------------------------TA-----AAG----------  113

seq1  GGTTTCAACTGAGAGACCACACCCTACCTCAGTTAATAAAGTGAAAAGTG  299
             ||||| |||  |  |          |||   |||||| ||  |
seq2  -------ACTGACAGAAAATTC----------TTA--GAAGTGATAAAAG  144

seq1  ATCTAGGGAGACCCATAGCATCGACTGCTCATTTCCACATGTACACAGGC  349
       |  ||    | | |||| ||  |            | ||  |||||  |
seq2  TTTCAG---CAACTATAGGATATA------------AAATCAACACA--C  177

seq1  ACACACACCAGCACACACATAAGCACACACACCAACACACACATGCACTC  399
      ||||||||   |||||||| |  ||||||||||                 
seq2  ACACACACACACACACACACACACACACACACC-----------------  210

seq1  ACACACACGTGAACCAGAATATACACACACACACC  434
                                         
seq2  -----------------------------------  210