BAC Information

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BAC

Clone NameB6Ng01-176I03
Chromosome3 (Build37)
Map Location 15,920,772 - 16,078,640
singlet/doubletdoublet
Overlap genenone
Upstream geneEG634323, LOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
Downstream geneYthdf3, LOC100040034, LOC100040059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176I03.bB6Ng01-176I03.g
ACCGA004025GA004026
length1,057951
definitionB6Ng01-176I03.b B6Ng01-176I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,077,579 - 16,078,640)(15,920,772 - 15,921,356)
sequence
gaattcctcctccagacaatgccagtgtccctctctcaccaaagtcccaa
ctgaggcttgcttacttcccacagagtctaaatagccaacattcaattca
cagtacctctcctcctcagggcaaccattggcttggtgccttgcagctgt
gactgtcacacactagcctttgactcgtcctcaatctactatatctgact
gtactgaaggagtccatccctatttcccactatgtggtgtggaaaagaac
agaatgagcaaccaaacgaagtccagcatggagttgactctagatctctg
cggtgaaagagatctagagtctagatctcactgggtctgtgctggctaat
tttatgacaacttgacacaagctggagtcatctgagaagagggaacctca
attttaaaaaatgtctaaaagatcagactgtaggcaagtctgtaaggcat
tttctttattacttattgatgtggaaagaccaagaccattataggtgggg
tcacctctgggctgctggtccttggttctacaagaatgtaggctgagcaa
gccacggggagtaagccagaaaccagtattcctctattacctcttcatta
gctcctgcctccagactcctgccctgttcttgtctaaactttctttgtga
ataattgtgatgtggaagcataaaccaaataactcctttcctctccaagt
taccttggtgatggggcttcatcacaacgataataactgtactagcacta
agtccatgataggaacttgaacctcagcaacctgcctgtgatgaattcat
ctagagtgatttctactcaagacagcagtctctactcaaatgccacccca
taggctttggcatagcctggaagcttctccagtctgctttccaaccccaa
ccccaaccccaaccctcagcccacccatagcttttctcatctgacatcac
acagtgctctcagatgttcattttctaaaatctggggattcttttcacta
gtcaaccaacctgggtggagcccatagtcctgactattaagcttatagaa
atatgac
gaattcttttaccaataacatctgtgggttttttttttcatgtttacttt
caatattttgattgcaggtgtttacaatcaacaattgtgctgcagatgga
cctcaattaggtcctcgatcttcaggaaaacttcaggggtctggttccag
gcatgcaaggagttggtgaggatgacaaacagacagggacacagagagag
tgtttacctgaatgttatttgtcaaattgagcatcagacttttaatatag
aagaaaatagggaagttaggtgacacatctgcaaggtacaatgaggttac
caaatgcttaatgactctcacagaaaacagaggaatgcaaacataaagac
tgccaggaactggacaataaaacaactgagacaaagtcagctctatctaa
ggtccgctatattcttagaagccaggtgagaggtctttacactcctgggg
caagggctttcatgcccaagtcatggttctaattagggagttctgctata
gctaactttctcatgaataatgcaatactttagttcctcctaaaaccaca
acccaatctgcttcctaaaccattgtaaattcctgtatatgtgagtgtct
tgccttttattctaagtgattgtgtgggtagacttcctactaataagtaa
tgtagtctgtcatacataactataataagaattctaaacttacttctcta
agcttgccctgagattactaactctgtgtagtagatagtaatgcctgatt
tctttcactacctttcttacaatattagaggcaattctgaatgtcaatga
ataggcaacattattactgaattccaagcccagggttggctcaagggcta
cctggggcattggtgaaggccaagaagcaaagttcaatttttcttaggta
tttggcaagtcattgcttggaggcacctatataaacatactgaaagaaaa
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16077579_16078640
seq2: B6Ng01-176I03.b_42_1098 (reverse)

seq1  GTCATATTTCCTATAGCCTTTATAGTCAGGACTATGGGCTCCCACCCAGG  50
      ||||||||| |||||  ||| ||||||||||||||||||| |||||||||
seq2  GTCATATTT-CTATAAGCTTAATAGTCAGGACTATGGGCT-CCACCCAGG  48

seq1  TTGGTTGACTAGTGAAAAGAATCCCCAGATTTTAGAAAATTGAACATCTG  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGGTTGACTAGTGAAAAGAATCCCCAGATTTTAGAAAA-TGAACATCTG  97

seq1  AGAGCACCTGTGTGATGTCAGATGAGAAAAGCTATGGGTGGGGCTGAGGG  150
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGCA-CTGTGTGATGTCAGATGAGAAAAGCTATGGGT-GGGCTGAGGG  145

seq1  TTGGGGTTGGGGTTGGGGTTGGAAAGCAGACTGGAGAAGCTTCCAGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTGGGGTTGGGGTTGGAAAGCAGACTGGAGAAGCTTCCAGGCTA  195

seq1  TGCCAAAGCCTATGGGGTGGCATTTGAGTAGAGACTGCTGTCTTGAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGCCTATGGGGTGGCATTTGAGTAGAGACTGCTGTCTTGAGTAG  245

seq1  AAATCACTCTAGATGAATTCATCACAGGCAGGTTGCTGAGGTTCAAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTCTAGATGAATTCATCACAGGCAGGTTGCTGAGGTTCAAGTTC  295

seq1  CTATCATGGACTTAGTGCTAGTACAGTTATTATCGTTGTGATGAAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATGGACTTAGTGCTAGTACAGTTATTATCGTTGTGATGAAGCCCC  345

seq1  ATCACCAAGGTAACTTGGAGAGGAAAGGAGTTATTTGGTTTATGCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAGGTAACTTGGAGAGGAAAGGAGTTATTTGGTTTATGCTTCCA  395

seq1  CATCACAATTATTCACAAAGAAAGTTTAGACAAGAACAGGGCAGGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAATTATTCACAAAGAAAGTTTAGACAAGAACAGGGCAGGAGTCT  445

seq1  GGAGGCAGGAGCTAATGAAGAGGTAATAGAGGAATACTGGTTTCTGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGAGCTAATGAAGAGGTAATAGAGGAATACTGGTTTCTGGCTT  495

seq1  ACTCCCCGTGGCTTGCTCAGCCTACATTCTTGTAGAACCAAGGACCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCGTGGCTTGCTCAGCCTACATTCTTGTAGAACCAAGGACCAGCA  545

seq1  GCCCAGAGGTGACCCCACCTATAATGGTCTTGGTCTTTCCACATCAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGGTGACCCCACCTATAATGGTCTTGGTCTTTCCACATCAATAA  595

seq1  GTAATAAAGAAAATGCCTTACAGACTTGCCTACAGTCTGATCTTTTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAGAAAATGCCTTACAGACTTGCCTACAGTCTGATCTTTTAGAC  645

seq1  ATTTTTTAAAATTGAGGTTCCCTCTTCTCAGATGACTCCAGCTTGTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAATTGAGGTTCCCTCTTCTCAGATGACTCCAGCTTGTGTCA  695

seq1  AGTTGTCATAAAATTAGCCAGCACAGACCCAGTGAGATCTAGACTCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCATAAAATTAGCCAGCACAGACCCAGTGAGATCTAGACTCTAGA  745

seq1  TCTCTTTCACCGCAGAGATCTAGAGTCAACTCCATGCTGGACTTCGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCACCGCAGAGATCTAGAGTCAACTCCATGCTGGACTTCGTTTG  795

seq1  GTTGCTCATTCTGTTCTTTTCCACACCACATAGTGGGAAATAGGGATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCATTCTGTTCTTTTCCACACCACATAGTGGGAAATAGGGATGGA  845

seq1  CTCCTTCAGTACAGTCAGATATAGTAGATTGAGGACGAGTCAAAGGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAGTACAGTCAGATATAGTAGATTGAGGACGAGTCAAAGGCTAG  895

seq1  TGTGTGACAGTCACAGCTGCAAGGCACCAAGCCAATGGTTGCCCTGAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACAGTCACAGCTGCAAGGCACCAAGCCAATGGTTGCCCTGAGGA  945

seq1  GGAGAGGTACTGTGAATTGAATGTTGGCTATTTAGACTCTGTGGGAAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTACTGTGAATTGAATGTTGGCTATTTAGACTCTGTGGGAAGTA  995

seq1  AGCAAGCCTCAGTTGGGACTTTGGTGAGAGAGGGACACTGGCATTGTCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCTCAGTTGGGACTTTGGTGAGAGAGGGACACTGGCATTGTCTG  1045

seq1  GAGGAGGAATTC  1062
      ||||||||||||
seq2  GAGGAGGAATTC  1057

seq1: chr3_15920772_15921356
seq2: B6Ng01-176I03.g_65_649

seq1  GAATTCTTTTACCAATAACATCTGTGGGTTTTTTTTTTCATGTTTACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACCAATAACATCTGTGGGTTTTTTTTTTCATGTTTACTTT  50

seq1  CAATATTTTGATTGCAGGTGTTTACAATCAACAATTGTGCTGCAGATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTGATTGCAGGTGTTTACAATCAACAATTGTGCTGCAGATGGA  100

seq1  CCTCAATTAGGTCCTCGATCTTCAGGAAAACTTCAGGGGTCTGGTTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTAGGTCCTCGATCTTCAGGAAAACTTCAGGGGTCTGGTTCCAG  150

seq1  GCATGCAAGGAGTTGGTGAGGATGACAAACAGACAGGGACACAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAAGGAGTTGGTGAGGATGACAAACAGACAGGGACACAGAGAGAG  200

seq1  TGTTTACCTGAATGTTATTTGTCAAATTGAGCATCAGACTTTTAATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCTGAATGTTATTTGTCAAATTGAGCATCAGACTTTTAATATAG  250

seq1  AAGAAAATAGGGAAGTTAGGTGACACATCTGCAAGGTACAATGAGGTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAGGGAAGTTAGGTGACACATCTGCAAGGTACAATGAGGTTAC  300

seq1  CAAATGCTTAATGACTCTCACAGAAAACAGAGGAATGCAAACATAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTAATGACTCTCACAGAAAACAGAGGAATGCAAACATAAAGAC  350

seq1  TGCCAGGAACTGGACAATAAAACAACTGAGACAAAGTCAGCTCTATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGAACTGGACAATAAAACAACTGAGACAAAGTCAGCTCTATCTAA  400

seq1  GGTCCGCTATATTCTTAGAAGCCAGGTGAGAGGTCTTTACACTCCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGCTATATTCTTAGAAGCCAGGTGAGAGGTCTTTACACTCCTGGGG  450

seq1  CAAGGGCTTTCATGCCCAAGTCATGGTTCTAATTAGGGAGTTCTGCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTTTCATGCCCAAGTCATGGTTCTAATTAGGGAGTTCTGCTATA  500

seq1  GCTAACTTTCTCATGAATAATGCAATACTTTAGTTCCTCCTAAAACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTTTCTCATGAATAATGCAATACTTTAGTTCCTCCTAAAACCACA  550

seq1  ACCCAATCTGCTTCCTAAACCATTGTAAATTCCTG  585
      |||||||||||||||||||||||||||||||||||
seq2  ACCCAATCTGCTTCCTAAACCATTGTAAATTCCTG  585