BAC Information

Click to search

BAC

Clone NameB6Ng01-176J23
Chromosome3 (Build37)
Map Location 155,304,291 - 155,304,839
singlet/doubletsinglet
Overlap genenone
Upstream geneBC007180, Tnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1
Downstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, Negr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176J23.bB6Ng01-176J23.g
ACCGA004113GA004114
length1,201987
definitionB6Ng01-176J23.b B6Ng01-176J23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatc
cttaatcatcagagaaatacaaatcaaaacaatgctgagattccatctca
caccagtcagaatggctaaaatcaaaaattcaggtgacagcagatgctgg
caaggatgtagagaaagaggaacactccttcattgttggtgggattgcaa
gcttgtacaaccactctggaaatcagtctggtggttcctcagaaaattgc
acatagtactaccagaggatcctgcaatacctctcctggccatatatcca
gaagatgttccaaccggtaagaaaaacacatgcaccactatgttcatagc
agccttatttataatagccagaagctggaaagaacccagatgcccctcaa
cagaggaatggatacaaaatgtggtacatttacacaatggagtactactc
agctattaaaaagaatgaatttatgaaattcctaggcaaatggatggacc
tggagggcatcatcctgagtgaggtaacacaatcacaaaagaactcaaat
gatatgtactcactgataagtggatattagcccagaaacttagtataccc
gagatataagagacaatttgtaaaacacatgaaactgaagaagaacgaag
accaaagtgtggacactttgccccttcttagaattggaaacaataaccca
tggaaggagttacagagataaagtttggaggtgtgacgaaagaatggacc
atctagagactgccatatctagggatccatcccataatcagcttccaaac
gctgacaccattgcatacactagcaagattttgctgaaaggacccagata
tagctatctcttgtgagactatgccggggccctagcaaacacagaagtgg
atgctcacagtcagctattggatctatcagatcacaggggcccccaatga
agaagctagtgaaagtaccaaaggagctaaacggaaactgcacccctata
gggtggaacaacattatgaactaactagtacccccagagctcttgactct
agctcataatgtatcaaagatcggcctagttgccatcactggtaaagaag
aagttcaattggaccttgccaactttattatggctcagtacaggtaatgc
ccaagcgctaaaagttaaggactgcggtggtggctttatgaggtgagata
c

gaattccagagtaattagcatagtaaacagcaaggtttccacaggtccct
tgcacttagagggccacctgatttcccagttctacttacccccttttatg
ggttatcagatagagataaattaattgtgagattatcaataaaaacaatg
tctggaatgcacagtgggtcagatgacagagcttacaatgatattatttt
ttgtctccaaagttatgcagcttatgggccattgtttccaaaatgactgt
cagactaaaaatgtgtgatggctcctgttcatctttaatgttgtacacag
gaatcagcatcctgcatgattcatgtgttgtgcatccttggtgctgttat
ttatttttccaattaggttagaatgagaacttaaagccgtacaagcatta
agacagtgttttaaaaataatgtaattgtaaaggtaactttaattcaatt
gttatctcagagacttactattgaatgaacttacatttctagcattttct
gaactctgggtggctggttcaactcagctgttgcgtctcaaaccttctcc
aagctgactgattcactctggcttctttgtcactgaattgctctgccagg
cctcaatgtacctaactctggccatgtgttcttccagctcctcattctgt
ggcttcagtgacctctgctgacctgcactgagctgcatgaacacatgaat
gacctcagcagcactgcactgcactcactgtactgacccccatctggcaa
cactgatctcagctccactcagctgaactgactgcctcctgggagctgct
cttaaatagcttttctcctaagagttgggtgtatcctatctctgactatc
tgtcaaatgtttctctgattcatcactttgtatgccactcaactagatat
tgtttgggactaaaggcatttactaaaggattcctatccagaggaattaa
aggtcatggattatctgcattctagtcagatcacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155304291_155304839
seq2: B6Ng01-176J23.g_67_615 (reverse)

seq1  GAGAAGGTTTGAGACGCAACAGCTGAGTTGAACCAGCCACCCAGAGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTTTGAGACGCAACAGCTGAGTTGAACCAGCCACCCAGAGTTCA  50

seq1  GAAAATGCTAGAAATGTAAGTTCATTCAATAGTAAGTCTCTGAGATAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCTAGAAATGTAAGTTCATTCAATAGTAAGTCTCTGAGATAACA  100

seq1  ATTGAATTAAAGTTACCTTTACAATTACATTATTTTTAAAACACTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTAAAGTTACCTTTACAATTACATTATTTTTAAAACACTGTCTT  150

seq1  AATGCTTGTACGGCTTTAAGTTCTCATTCTAACCTAATTGGAAAAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGTACGGCTTTAAGTTCTCATTCTAACCTAATTGGAAAAATAAA  200

seq1  TAACAGCACCAAGGATGCACAACACATGAATCATGCAGGATGCTGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCACCAAGGATGCACAACACATGAATCATGCAGGATGCTGATTCC  250

seq1  TGTGTACAACATTAAAGATGAACAGGAGCCATCACACATTTTTAGTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAACATTAAAGATGAACAGGAGCCATCACACATTTTTAGTCTGA  300

seq1  CAGTCATTTTGGAAACAATGGCCCATAAGCTGCATAACTTTGGAGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTTTGGAAACAATGGCCCATAAGCTGCATAACTTTGGAGACAAA  350

seq1  AAATAATATCATTGTAAGCTCTGTCATCTGACCCACTGTGCATTCCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATCATTGTAAGCTCTGTCATCTGACCCACTGTGCATTCCAGAC  400

seq1  ATTGTTTTTATTGATAATCTCACAATTAATTTATCTCTATCTGATAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTATTGATAATCTCACAATTAATTTATCTCTATCTGATAACCC  450

seq1  ATAAAAGGGGGTAAGTAGAACTGGGAAATCAGGTGGCCCTCTAAGTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGGGGTAAGTAGAACTGGGAAATCAGGTGGCCCTCTAAGTGCAA  500

seq1  GGGACCTGTGGAAACCTTGCTGTTTACTATGCTAATTACTCTGGAATTC  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGTGGAAACCTTGCTGTTTACTATGCTAATTACTCTGGAATTC  549


| Home | SequenceCutter | Blast | Download |