BAC Information

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BAC

Clone NameB6Ng01-176P14
Chromosome3 (Build37)
Map Location 39,987,945 - 40,111,305
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P14.bB6Ng01-176P14.g
ACCGA004369GA004370
length1,048896
definitionB6Ng01-176P14.b B6Ng01-176P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,987,945 - 39,988,997)(40,110,417 - 40,111,305)
sequence
gaattcataaagcccatctaccatcaacagtgcttccaggaaatgagtac
tctgtcctttcaccttgttacctgccacctgcatagttgctgttcaaata
attcatctggatggtctgctagatggacttttttctctaccaaatttttt
cagtaaaaaataaagacatttccaaatgttaaagaaaatactgtattcct
acaagatattttacataaaaataaataaatatttggactgagacttatcc
ttttttttttttggaccatttgaagagttgttccttttaacccccaacat
aaggatgaaaataatcactatgttcagaaaacagaaaaattaaaaaacac
aattatgaggagaaaggtggcctaaactaaagactaagaagatattcagg
gcacacacagagaattagcgcttgtttgtctgtcacttatgtctcttcaa
aaatcataacgaatttactattgaaccccataagcagaagtgagcatttc
ccaggagaagcagaagagattggcttcctactcacagtgtttcacaagga
aagcatctgctcccttttttttcctagatcatctcattcatagggaaatg
taagaaataaaggaatacttcatcgattgcactttaaattcattactctt
tttgcccctgctacatagcaagcagtggtgtatagctatgctgtaggaag
agagacaattcgttgggctctctacctgcattctcagggagttggagcgg
agacatagggtagcatggtgtactctactcagaatttggacctggacagt
ggacagaattaaaaatggagacaagtcaactcactctggatcagtccccc
actgtaaacctggtccaaatggtgactaagtcataggcaaatattttcac
agcatactagacattaggtgaccccatctttgagccatgaggcaatcgtc
ttcatcatttcttgatgggcagatgtcaggattactaataggctttttct
tgaaaatttcgggggagagtgctagtgtcatgacaggcccattcacac
gaattctcacaccagttcagggtttggctgacatcctggagctttgtgtg
agtataaaatgccaagtgtctcagcgtgagccccgttacctacctctaat
tctttcacacacagatcttccagatgttttttgggggaggatgtgtctct
ttataataaaagttatatcagccatcatttccacatattcctatggcacc
catttgtgagaatttgtactacattcccaaacatctgcagacagtatctc
tacaattacttctgaagttactagccacctgtcagcacagggattactac
cccatgcactgtcaagtgggaatcaaagttttttattggccactagagtt
ctcctacagacatgttgtaggcagataggaatattttcagcacatacttt
tattaggtgctgtaaatttagaagttgaacactccacagtgagtacatga
gcatatttaaggcatgtgcatgtattcagaactcactgagaggctggaat
gttggcagggccttaggttaagagtttgagctgaaaatgagatgcctgac
tcctttatctcttaagccaaaggcaactggagctgcttaggagaccatca
ctgtgtttgccttatggaaatgtggagaaatttcattttgtaaatatttc
aatgtatggggtagggtgacttttcaggtttagggaggaaaagagaactc
aagtcttgtgtggctgaatgggtgtggtgtatgtggaggaccatcactga
ccatccagtgctacttctatgagaagcaaaagcaagtggacttgggttta
tccatgacttctgtatgtcctttcagaattgtacagcagctggtatttgt
gaggtggacatggcctgtgtcggagctctttgggcagtattattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39987945_39988997
seq2: B6Ng01-176P14.b_46_1093

seq1  GAATTCATAAAGCCCATCTACCATCAACAGTGCTTCCAGGAAATGAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAGCCCATCTACCATCAACAGTGCTTCCAGGAAATGAGTAC  50

seq1  TCTGTCCTTTCACCTTGTTACCTGCCACCTGCATAGTTGCTGTTCAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTTTCACCTTGTTACCTGCCACCTGCATAGTTGCTGTTCAAATA  100

seq1  ATTCATCTGGATGGTCTGCTAGATGGACTTTTTTCTCTACCAAATTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTGGATGGTCTGCTAGATGGACTTTTTTCTCTACCAAATTTTTT  150

seq1  CAGTAAAAAATAAAGACATTTCCAAATGTTAAAGAAAATACTGTATTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAAATAAAGACATTTCCAAATGTTAAAGAAAATACTGTATTCCT  200

seq1  ACAAGATATTTTACATAAAAATAAATAAATATTTGGACTGAGACTTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATATTTTACATAAAAATAAATAAATATTTGGACTGAGACTTATCC  250

seq1  TTTTTTTTTTTTGGACCATTTGAAGAGTTGTTCCTTTTAACCCCCAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGGACCATTTGAAGAGTTGTTCCTTTTAACCCCCAACAT  300

seq1  AAGGATGAAAATAATCACTATGTTCAGAAAACAGAAAAATTAAAAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGAAAATAATCACTATGTTCAGAAAACAGAAAAATTAAAAAACAC  350

seq1  AATTATGAGGAGAAAGGTGGCCTAAACTAAAGACTAAGAAGATATTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAGGAGAAAGGTGGCCTAAACTAAAGACTAAGAAGATATTCAGG  400

seq1  GCACACACAGAGAATTAGCGCTTGTTTGTCTGTCACTTATGTCTCTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAGAGAATTAGCGCTTGTTTGTCTGTCACTTATGTCTCTTCAA  450

seq1  AAATCATAACGAATTTACTATTGAACCCCATAAGCAGAAGTGAGCATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAACGAATTTACTATTGAACCCCATAAGCAGAAGTGAGCATTTC  500

seq1  CCAGGAGAAGCAGAAGAGATTGGCTTCCTACTCACAGTGTTTCACAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAAGCAGAAGAGATTGGCTTCCTACTCACAGTGTTTCACAAGGA  550

seq1  AAGCATCTGCTCCCTTTTTTTTCCTAGATCATCTCATTCATAGGGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTGCTCCCTTTTTTTTCCTAGATCATCTCATTCATAGGGAAATG  600

seq1  TAAGAAATAAAGGAATACTTCATCGATTGCACTTTAAATTCATTACTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATAAAGGAATACTTCATCGATTGCACTTTAAATTCATTACTCTT  650

seq1  TTTGCCCCTGCTACATAGCAAGCAGTGGTGTATAGCTATGCTGTAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCCTGCTACATAGCAAGCAGTGGTGTATAGCTATGCTGTAGGAAG  700

seq1  AGAGACAATTCGTTGGGCTCTCTACCTGCATTCTCAGGGAGTTGGAGCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAATTCGTTGGGCTCTCTACCTGCATTCTCAGGGAGTTGGAGCGG  750

seq1  AGACATAGGGTAGCATGGTGTACTCTACTCAGAATTTGGACCTGGACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGGGTAGCATGGTGTACTCTACTCAGAATTTGGACCTGGACAGT  800

seq1  GGACAGAATTAAAAATGGAGACAAGTCAACTCACTCTGGATCAGTCCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAATTAAAAATGGAGACAAGTCAACTCACTCTGGATCAGTCCCCC  850

seq1  ACTGTAAACCTGGTCCAAATGGTGACTAAGTCATAGGCAAATATTTTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAACCTGGTCCAAATGGTGACTAAGTCATAGGCAAATATTTTCAC  900

seq1  AGCATACTAGACATTAGGTGACCCCATCTTTGAGCCATGAGGCAATCGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTAGACATTAGGTGACCCCATCTTTGAGCCATGAGGCAATCGTC  950

seq1  TTCCATCATTCCTTGATGGGCAGATGTCAGGATTACTAATTAGGCTTTTT  1000
      || ||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TT-CATCATTTCTTGATGGGCAGATGTCAGGATTACTAA-TAGGCTTTTT  998

seq1  C-TGAAAATTTCGGGGGAGGAGTGGCTAAGTGGTCATGAACAGCCCATTC  1049
      | |||||||||||||||| |||| ||| ||| |||||||   ||||||||
seq2  CTTGAAAATTTCGGGGGA-GAGT-GCT-AGT-GTCATGACAGGCCCATTC  1044

seq1  ACAC  1053
      ||||
seq2  ACAC  1048

seq1: chr3_40110417_40111305
seq2: B6Ng01-176P14.g_65_960 (reverse)

seq1  GGAATAATACTGCC--AAGTGCTCC-ACACAGGGCATGT-CACCTCACAA  46
      ||||||||||||||  ||| ||||| ||||||| ||||| ||||||||||
seq2  GGAATAATACTGCCCAAAGAGCTCCGACACAGGCCATGTCCACCTCACAA  50

seq1  ATACCAGCTGCTGTAC-ATTCTGAAAGGACATACAGAAGTCATGGATAA-  94
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  ATACCAGCTGCTGTACAATTCTGAAAGGACATACAGAAGTCATGGATAAA  100

seq1  -CCCAGTCCACTTGCTTTTGCTTCTCATAGGAGTAGCACTGGATGGTCAG  143
       || |||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCAAGTCCACTTGCTTTTGCTTCTCATAGAAGTAGCACTGGATGGTCAG  150

seq1  TGATGGTCCTCCACATACACCACACCCATTCAGCCACACAAGACTTGAGT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTCCTCCACATACACCACACCCATTCAGCCACACAAGACTTGAGT  200

seq1  TCTCTTTTCCTCCCTAAACCTGAAAAGTCACCCTACCCCATACATTGAAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCCTCCCTAAACCTGAAAAGTCACCCTACCCCATACATTGAAA  250

seq1  TATTTACAAAATGAAATTTCTCCACATTTCCATAAGGCAAACACAGTGAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAAAATGAAATTTCTCCACATTTCCATAAGGCAAACACAGTGAT  300

seq1  GGTCTCCTAAGCAGCTCCAGTTGCCTTTGGCTTAAGAGATAAAGGAGTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTAAGCAGCTCCAGTTGCCTTTGGCTTAAGAGATAAAGGAGTCA  350

seq1  GGCATCTCATTTTCAGCTCAAACTCTTAACCTAAGGCCCTGCCAACATTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCATTTTCAGCTCAAACTCTTAACCTAAGGCCCTGCCAACATTC  400

seq1  CAGCCTCTCAGTGAGTTCTGAATACATGCACATGCCTTAAATATGCTCAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTCAGTGAGTTCTGAATACATGCACATGCCTTAAATATGCTCAT  450

seq1  GTACTCACTGTGGAGTGTTCAACTTCTAAATTTACAGCACCTAATAAAAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCACTGTGGAGTGTTCAACTTCTAAATTTACAGCACCTAATAAAAG  500

seq1  TATGTGCTGAAAATATTCCTATCTGCCTACAACATGTCTGTAGGAGAACT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTGAAAATATTCCTATCTGCCTACAACATGTCTGTAGGAGAACT  550

seq1  CTAGTGGCCAATAAAAAACTTTGATTCCCACTTGACAGTGCATGGGGTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGCCAATAAAAAACTTTGATTCCCACTTGACAGTGCATGGGGTAG  600

seq1  TAATCCCTGTGCTGACAGGTGGCTAGTAACTTCAGAAGTAATTGTAGAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCTGTGCTGACAGGTGGCTAGTAACTTCAGAAGTAATTGTAGAGA  650

seq1  TACTGTCTGCAGATGTTTGGGAATGTAGTACAAATTCTCACAAATGGGTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTGCAGATGTTTGGGAATGTAGTACAAATTCTCACAAATGGGTG  700

seq1  CCATAGGAATATGTGGAAATGATGGCTGATATAACTTTTATTATAAAGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGAATATGTGGAAATGATGGCTGATATAACTTTTATTATAAAGAG  750

seq1  ACACATCCTCCCCCAAAAAACATCTGGAAGATCTGTGTGTGAAAGAATTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCTCCCCCAAAAAACATCTGGAAGATCTGTGTGTGAAAGAATTA  800

seq1  GAGGTAGGTAACGGGGCTCACGCTGAGACACTTGGCATTTTATACTCACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGTAACGGGGCTCACGCTGAGACACTTGGCATTTTATACTCACA  850

seq1  CAAAGCTCCAGGATGTCAGCCAAACCCTGAACTGGTGTGAGAATTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCCAGGATGTCAGCCAAACCCTGAACTGGTGTGAGAATTC  896