BAC Information

Click to search

BAC

Clone NameB6Ng01-178D24
Chromosome3 (Build37)
Map Location 129,191,698 - 129,273,710
singlet/doubletdoublet
Overlap geneElovl6, LOC100043758
Upstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840
Downstream geneEgf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178D24.bB6Ng01-178D24.g
ACCGA005295GA005296
length8201,088
definitionB6Ng01-178D24.b B6Ng01-178D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,191,698 - 129,192,524)(129,272,589 - 129,273,710)
sequence
gaattctcacggtggcttgcccatttgttctgagaggaggcatttgaaac
tgtttcttgaagtttaggagaatgggcagaaccatgcaaatacttttgga
gtgcatcatggagctgagacacttagggttacccaccagctgtttctctg
gctcttgaataggcaggtgggtcaacccatacagggaaccatgcccaggt
gctacccagggccttgaggaagtgaaaacttctgcctgaggctcacaggg
ctggttcacagagtacactagctacttctcgagtccctgtacatgtgtgg
tcccgatggcactgtgtagcagcgtgggtaaagggaggtctcaacttagg
ttgagttctttttccacagtatcatggcagaaaaaaacaaaccctcagct
ttgtgctttgagctcaaggtccatgagggctctcgggttctccagcagca
aatacagcaaatatgtcagatgtcaagtaacacaagaggggacaggtgaa
aagcttttcctgtaggaacaaggttctctaccttgttgaggattaatctt
gagagacaggtgtgtgaatgctgtgtttagttccctttttaataaggcca
ccatacatctctttttgaatggtatattagtcagagttctctagaggcac
agaacttatggatcgtctctatatagtaaaggaatttattgatgacttac
agtctgcagtctaactgccaacaatggtcagcagcagatgtgaatggaag
acaaaggatctagcagttgctcagtcccacaccacaagcagttgagagag
agggagagaggggggagaga
gaattcactgaggaagaggagatgaagagactagaaggtttctgtgagag
ctactgagagaagtcctggcactatattccagctgctattgttaaccgtg
atgtctataaaccctgcattcacccgcaccttacccctctggtgcctttc
cctcattttacagagtgtgggttctctcaggaagtaagatacagcattca
cgaataacaccagaaagccgtgccctacctttccaccaggccatgtcacc
gggaccccagagtgtcttgccttttggaggtgactcaacacaggaagcca
gcatgcaatttgttttaatttagaatttagatgtgttggtctaggctagg
tgcagcctgagatcctgcaggctctgcagtactcatgccggttgaccagt
tctctggagagaaggctgggacgactggatcacctcagcgtggctgtgtg
agggagccggtgaccactccagcacacctttgtgcatactgtagacagct
aaaaaatattccagagggctttagacgacaaaggggcctctctgctctct
cctagaaacgtgatttcaaaaggaacacttgactttcctcaaaactttac
tgtttgaaatttcaaaaattaacctttttcctcgaaaaatgaagctgtac
aacccctggtgcacctcatgtttgaatgctcgctcatgtgcgcagaaata
agcggtgcacagcctcctgttccctcgacccaggctgctggtagaaagca
acaactgacagacagaaaggaagcaacgtcagtcagaatgcaggccggag
gcaactttctgtcatcacggtaagttcagcagtaagcagggtgggaaagg
aattgcattatagactgtagcagcacagtatcctatcgttgtcggcaccg
atttaattctttctctttgttgttgttgtgtttgagacaatgtttcctgt
tgtagcctgctgctgtctggactagctctatacatcagcagcctcaatct
cagagtactggattccaggtgtgtgtgcatcacccagctctcaggtggac
ttagttctgctggagcttggcaatacagcattacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_129191698_129192524
seq2: B6Ng01-178D24.b_42_861

seq1  GAATTCTCACGGTGGCTTGCCCATTTGTTCTGAGAGGAGGCATTTGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACGGTGGCTTGCCCATTTGTTCTGAGAGGAGGCATTTGAAAC  50

seq1  TGTTTCTTGAAGTTTAGGAGAATGGGCAGAACCATGCAAATACTTTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTGAAGTTTAGGAGAATGGGCAGAACCATGCAAATACTTTTGGA  100

seq1  GTGCATCATGGAGCTGAGACACTTAGGGTTACCCACCAGCTGTTTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCATGGAGCTGAGACACTTAGGGTTACCCACCAGCTGTTTCTCTG  150

seq1  GCTCTTGAATAGGCAGGTGGGTCAACCCATACAGGGAACCATGCCCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGAATAGGCAGGTGGGTCAACCCATACAGGGAACCATGCCCAGGT  200

seq1  GCTACCCAGGGCCTTGAGGAAGTGAAAACTTCTGCCTGAGGCTCACAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCAGGGCCTTGAGGAAGTGAAAACTTCTGCCTGAGGCTCACAGGG  250

seq1  CTGGTTCACAGAGTACACTAGCTACTTCTCGAGTCCCTGTACATGTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCACAGAGTACACTAGCTACTTCTCGAGTCCCTGTACATGTGTGG  300

seq1  TCCCGATGGCACTGTGTAGCAGCGTGGGTAAAGGGAGGTCTCAACTTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGATGGCACTGTGTAGCAGCGTGGGTAAAGGGAGGTCTCAACTTAGG  350

seq1  TTGAGTTCTTTTTCCACAGTATCATGGCAGAAAAAAACAAACCCTCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTTTTTCCACAGTATCATGGCAGAAAAAAACAAACCCTCAGCT  400

seq1  TTGTGCTTTGAGCTCAAGGTCCATGAGGGCTCTCGGGTTCTCCAGCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTGAGCTCAAGGTCCATGAGGGCTCTCGGGTTCTCCAGCAGCA  450

seq1  AATACAGCAAATATGTCAGATGTCAAGTAACACAAGAGGGGACAGGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCAAATATGTCAGATGTCAAGTAACACAAGAGGGGACAGGTGAA  500

seq1  AAGCTTTTCCTGTAGGAACAAGGTTCTCTACCTTGTTGAGGATTAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTCCTGTAGGAACAAGGTTCTCTACCTTGTTGAGGATTAATCTT  550

seq1  GAGAGACAGGTGTGTGAATGCTGTGTTTAGTTCCCTTTTTAATAAGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGGTGTGTGAATGCTGTGTTTAGTTCCCTTTTTAATAAGGCCA  600

seq1  CCATACATCTCTTTTTGAATGGTATATTAGTCAGAGTTCTCTAGAGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACATCTCTTTTTGAATGGTATATTAGTCAGAGTTCTCTAGAGGCAC  650

seq1  AGAACTTATGGATCGTCTCTATATAGTAAAGGAATTTATTGATGACTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTATGGATCGTCTCTATATAGTAAAGGAATTTATTGATGACTTAC  700

seq1  AGTCTGCAGTCTAACTGCCAACAATGGTCAGCAGCAGATGTGAATGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCAGTCTAACTGCCAACAATGGTCAGCAGCAGATGTGAATGGAAG  750

seq1  ACAAAGGATCTAGCAGTTGCTCAGTCCCACACCACAAGCAGTTGAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATCTAGCAGTTGCTCAGTCCCACACCACAAGCAGTTGAGAGAG  800

seq1  AGGGAGAGAGGGGGAGAGAGGGAGAGA  827
      ||||||||||||       ||||||||
seq2  AGGGAGAGAGGG-------GGGAGAGA  820

seq1: chr3_129272589_129273710
seq2: B6Ng01-178D24.g_63_1150 (reverse)

seq1  AGAAGTAAATGCTGTTATTGCAAAAGCTTCCAGCAGGAAACTAAGTCACA  50
      |||||| ||||||| ||||||  |||| ||||||||  |||||||||   
seq2  AGAAGT-AATGCTG-TATTGC-CAAGC-TCCAGCAG--AACTAAGTCCAC  44

seq1  CTGAGAGCT-GGTGATGCACACACACCTTGAATCCCAGTACTCTGAGATT  99
      ||||||||| |||||||||||||||||| |||| ||||||||||||||||
seq2  CTGAGAGCTGGGTGATGCACACACACCTGGAAT-CCAGTACTCTGAGATT  93

seq1  GAGGCCTGCCTGATGTATAGAGCTAGTTCCAGAACAGCCAAGCCAGGGCT  149
      |||| ||| ||||||||||||||||| ||||| |||||  |||   ||||
seq2  GAGG-CTG-CTGATGTATAGAGCTAG-TCCAG-ACAGC--AGC--AGGCT  135

seq1  AC-ACAGAGAAACATTGTCTCAAA-ACAACAAACAAACAAACAAAGAAGG  197
      || |||| |||||||||||||||| |||||||       ||||||||   
seq2  ACAACAG-GAAACATTGTCTCAAACACAACAA------CAACAAAGA---  175

seq1  AAAAGAAATTAAAATCAG-AAAGACATGTAAGGCCTCCTGATAGGATACT  246
       ||||||  | ||||| |    ||||             |||||||||||
seq2  GAAAGAA--TTAAATCGGTGCCGACA-----------ACGATAGGATACT  212

seq1  GTGCTTGCTACAGTCTTATAATGCAATTCCTTTCCCACCCTGCTTACTGC  296
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGC-TGCTACAGTC-TATAATGCAATTCCTTTCCCACCCTGCTTACTGC  260

seq1  TGAACTTACCGTGATGACAGAAAGTTGCC-CCGGCCTGCATTCTGACTGA  345
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAACTTACCGTGATGACAGAAAGTTGCCTCCGGCCTGCATTCTGACTGA  310

seq1  CGTTGCTTCC-TTCTGTCTGTCAGTTGTTGCTTTCTACCAGCAGCCTGGG  394
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCTTCCTTTCTGTCTGTCAGTTGTTGCTTTCTACCAGCAGCCTGGG  360

seq1  TCGAGGGAACAGGAGGCTGTGCACCGCTTATTTCTGCGCACATGAGCGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGGAACAGGAGGCTGTGCACCGCTTATTTCTGCGCACATGAGCGAG  410

seq1  CATTCAAACATGAGGTGCACCAGGGGTTGTACAGCTTCATTTTTCGAGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAACATGAGGTGCACCAGGGGTTGTACAGCTTCATTTTTCGAGGA  460

seq1  AAAAGGTTAATTTTTGAAATTTCAAACAGTAAAGTTTTGAGGAAAGTCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTAATTTTTGAAATTTCAAACAGTAAAGTTTTGAGGAAAGTCAA  510

seq1  GTGTTCCTTTTGAAATCACGTTTCTAGGAGAGAGCAGAGAGGCCCCTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTTTTGAAATCACGTTTCTAGGAGAGAGCAGAGAGGCCCCTTTG  560

seq1  TCGTCTAAAGCCCTCTGGAATATTTTTTAGCTGTCTACAGTATGCACAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTAAAGCCCTCTGGAATATTTTTTAGCTGTCTACAGTATGCACAAA  610

seq1  GGTGTGCTGGAGTGGTCACCGGCTCCCTCACACAGCCACGCTGAGGTGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTGGAGTGGTCACCGGCTCCCTCACACAGCCACGCTGAGGTGAT  660

seq1  CCAGTCGTCCCAGCCTTCTCTCCAGAGAACTGGTCAACCGGCATGAGTAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCGTCCCAGCCTTCTCTCCAGAGAACTGGTCAACCGGCATGAGTAC  710

seq1  TGCAGAGCCTGCAGGATCTCAGGCTGCACCTAGCCTAGACCAACACATCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCCTGCAGGATCTCAGGCTGCACCTAGCCTAGACCAACACATCT  760

seq1  AAATTCTAAATTAAAACAAATTGCATGCTGGCTTCCTGTGTTGAGTCACC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAAATTAAAACAAATTGCATGCTGGCTTCCTGTGTTGAGTCACC  810

seq1  TCCAAAAGGCAAGACACTCTGGGGTCCCGGTGACATGGCCTGGTGGAAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGGCAAGACACTCTGGGGTCCCGGTGACATGGCCTGGTGGAAAG  860

seq1  GTAGGGCACGGCTTTCTGGTGTTATTCGTGAATGCTGTATCTTACTTCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCACGGCTTTCTGGTGTTATTCGTGAATGCTGTATCTTACTTCCT  910

seq1  GAGAGAACCCACACTCTGTAAAATGAGGGAAAGGCACCAGAGGGGTAAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACCCACACTCTGTAAAATGAGGGAAAGGCACCAGAGGGGTAAGG  960

seq1  TGCGGGTGAATGCAGGGTTTATAGACATCACGGTTAACAATAGCAGCTGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGTGAATGCAGGGTTTATAGACATCACGGTTAACAATAGCAGCTGG  1010

seq1  AATATAGTGCCAGGACTTCTCTCAGTAGCTCTCACAGAAACCTTCTAGTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTGCCAGGACTTCTCTCAGTAGCTCTCACAGAAACCTTCTAGTC  1060

seq1  TCTTCATCTCCTCTTCCTCAGTGAATTC  1122
      ||||||||||||||||||||||||||||
seq2  TCTTCATCTCCTCTTCCTCAGTGAATTC  1088