BAC Information

Click to search

BAC

Clone NameB6Ng01-178G18
Chromosome3 (Build37)
Map Location 6,174,439 - 6,175,241
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570
Downstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178G18.bB6Ng01-178G18.g
ACCGA005415GA005416
length8011,202
definitionB6Ng01-178G18.b B6Ng01-178G18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacctagggtgtgacagcacaatttggatgggtgaattctatata
ggcatttgtccacaggcaagagctgcatcatgtgagtccgcagcccaaag
ctgcactaggcaagaggagcaggagagagagagagagaaagagagagaga
gagagagagagagagagagagagagagagagagagagaacaacaacaaag
ttagaaaaattcttaggtcaagtaaattaagtaaatttatggtgtgcatg
gttcccagaagtaggaatgggaaatatacaaatgacatgagaagagagag
aaagagacatagagagagaataggtttcagaaaagcggttgtcccctgtt
taggacaaaaatgatggaaaatgacagagctctcctagggacaggagaaa
aatgggagatgatccatttcctgtctggctccttctagagatatacttag
ttctgcttacaccatgttctcttccctctctgtctattgtctgtctttga
tgcaccaatctgtccatgagtcaactttatctgtttttattttgctgttt
ggatgattgttgttttatgtttcacattcaaaagaaaaaaatggttaaaa
tttatatgctggctatccatcccttgatatagtttaacttgtttagaagg
cagtcttaacttgcacagcagaagctgataagctgccctgcacccttagc
taggagttaagcacagcagaagaagtcctgccaggagttggaaagcttct
tttaaaggggccagaacttatcaagttatatgacaagtacgctgatgact
a

gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacagctctgagtt
tccatctcacatcagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggagcactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaattagtctggcagtttctca
gaaaattggacatagtactaccggaggatcccgaaatacctctcctgggc
atatatccagaagatgttcaaactggtaagaaagacacatgctctactat
gttcatagcagccttatttataatagccagaagctggaacgaacccaggt
gcccctcatcagtggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcacctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctgaagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagctcagatac
tttgaataccccagacacaagatacaaagcacatgaaactcaagaacaac
gaagaccaaagtgtggacactttgccccttcttagaattgggaacaaaac
acccgtggaaggagttacagagacaaagtttggagctgagaggaaagaat
ggaccatctagaggctacaatatctggggatccatcccataatcagctgc
caaatgcagacacctttgcatacactagcaagattttgctgaaaggaccc
tgaaatagctgtctcttgtgagactatgctggggcctagcaaacagaagt
agatgctcatagtcagctattggatggatcacagagcctccaatgaggag
ctagaggaaagtatccaaggaggctaaagggatctacatcttatagtgaa
cacatatgactaccagtactcctggagctcgtgttctctagctgcatatg
tatcagaagatgactagctggccatcatggaaaagagaggccattggaac
ttgcaaactttatattggcctccataacaggtaccgctgaactagattgg
aatgggtggctaagggaatgtccgcagtgcacaatactagtaatgcatcg
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6174439_6175241
seq2: B6Ng01-178G18.b_32_832

seq1  GAATTCACCTAGGGTGTGACAGCACAATTTGGATGGGTGAATTCTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAGGGTGTGACAGCACAATTTGGATGGGTGAATTCTATATA  50

seq1  GGCATTTGTCCACAGGCAAGAGCTGCATCATGTGAGTCCGCAGCCCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGTCCACAGGCAAGAGCTGCATCATGTGAGTCCGCAGCCCAAAG  100

seq1  CTGCACTAGGCAAGAGGAGCAGGAGAGAGAGAGAGAGAAAGAGAGAGAGA  150
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  CTGCACTAGGCAAGAGGAGCAGGAGAGAGAGAGAGAGAA--AGAGAGAGA  148

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAACAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAACAACAA  198

seq1  AGTTAGAAAAATTCTTAGGTCAAGTAAATTAAGTAAATTTATGGTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAAATTCTTAGGTCAAGTAAATTAAGTAAATTTATGGTGTGCA  248

seq1  TGGTTCCCAGAAGTAGGAATGGGAAATATACAAATGACATGAGAAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCAGAAGTAGGAATGGGAAATATACAAATGACATGAGAAGAGAG  298

seq1  AGAAAGAGACATAGAGAGAGAATAGGTTTCAGAAAAGCGGTTGTCCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGACATAGAGAGAGAATAGGTTTCAGAAAAGCGGTTGTCCCCTG  348

seq1  TTTAGGACAAAAATGATGGAAAATGACAGAGCTCTCCTAGGGACAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGACAAAAATGATGGAAAATGACAGAGCTCTCCTAGGGACAGGAGA  398

seq1  AAAATGGGAGATGATCCATTTCCTGTCTGGCTCCTTCTAGAGATATACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGAGATGATCCATTTCCTGTCTGGCTCCTTCTAGAGATATACTT  448

seq1  AGTTCTGCTTACACCATGTTCTCTTCCCTCTCTGTCTATTGTCTGTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCTTACACCATGTTCTCTTCCCTCTCTGTCTATTGTCTGTCTTT  498

seq1  GATGCACCAATCTGTCCATGAGTCAACTTTATCTGTTTTTATTTTGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACCAATCTGTCCATGAGTCAACTTTATCTGTTTTTATTTTGCTGT  548

seq1  TTGGATGATTGTTGTTTTATGTTTCACATTCAAAAGAAAAAAATGGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGATTGTTGTTTTATGTTTCACATTCAAAAGAAAAAAATGGTTAA  598

seq1  AATTTATATGCTGGCTATCCATCCCTTGATATAGTTTAACTTGTTTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATGCTGGCTATCCATCCCTTGATATAGTTTAACTTGTTTAGAA  648

seq1  GGCAGTCTTAACTTGCACAGCAGAAGCTGATAAGCTGCCCTGCACCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTTAACTTGCACAGCAGAAGCTGATAAGCTGCCCTGCACCCTTA  698

seq1  GCTAGGAGTTAAGCACAGCAGAAGAAGTCCTGCCAGGAGTTGGAAAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAGTTAAGCACAGCAGAAGAAGTCCTGCCAGGAGTTGGAAAGCTT  748

seq1  CTTTTAAAGGGGCCAGAACTTATCAAGTTATATGACAAGTACGCTGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGGGGCCAGAACTTATCAAGTTATATGACAAGTACGCTGATGA  798

seq1  CTA  803
      |||
seq2  CTA  801


| Home | SequenceCutter | Blast | Download |