BAC Information

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BAC

Clone NameB6Ng01-178J21
Chromosome3 (Build37)
Map Location 132,821,901 - 132,975,571
singlet/doubletdoublet
Overlap gene9130221D24Rik, Ppa2
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12
Downstream geneE130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178J21.bB6Ng01-178J21.g
ACCGA005557GA005558
length1,1841,093
definitionB6Ng01-178J21.b B6Ng01-178J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,974,394 - 132,975,571)(132,821,901 - 132,822,982)
sequence
gaattcttctggcccactccctctcaacccttcacatggacaacctgact
taaccacgaagctcagctcaactctgaccccgtggctctcggcctggttc
aaacctctgacttatctgatttcccagcaccttgaacaaacacctgcagt
gattctctctgcatctgcaacagccagtttctgcctttttgtatagacac
tgggaagccctaaaacagctacagcctcttttaactcttctgcagccatt
ctgtaacctacacatagagatgtatttaccacagggtgtgtatgcgtgac
cttggagttagcagtaactaagattggaatcgagagcctggtttgagctg
gggagataactaaattggcaaaacccttggctgtgcaagcaagcagtagg
atgtgagtttgctccccagaacccaggtaacaaaaccaagcaggatggtg
catgcttattgtcccagtcctggggaggcagagaccaacagatctcggtg
gcccctggccatctagcctcacctacctccagatcagtgacacgctctgc
ctcaaaaaatacaataaacagcacccaaggatcaagacgtcatactgctg
gcatgcacctgtgcacaaagaacctgtgtttgcctgcgccagtagtcagg
ggtaaagtggggctccataaaccccatgcagcgtctcaatttactgttat
tccattaattctgtcaccgtagaaagactactgtgtttctgataggagac
attcatgacatattactgcacttattgaaaacccaagacacgtccaccgt
attatacccacaggcttttctgcttgggctttctgccattatataacagc
atctcttctggaaaacactcccagtggctgttacattgtaactttgggaa
tataacccattcagaaatgagcacacatatttaagggcttcccttccttc
tgttgttttatttttatggttgctcttgttggagactgttgtcttaccca
gatccgggttgtgtaccacacccctcttttaaaagacctaatccatctcg
cctcaacaagaaacaagaacaggtctctccttgtagagagccaacggaaa
cctaatgtgagaaactatttattataggattttattccatggacaagagt
gccattccgagtgccccatgtgtgtttccaatcc
gaattctgtagcaggctctgttctcttaggaatcaaatgtttattgaagg
cacatatgtttactcataccagagcagcttctgagaggcagtcaggaggg
ttatgggtccaagcttgctgcctctccaggtccttggggcgctggggtta
gactgaaggcaatcgaaggagccagttcttcatgttttgtgtgctttctt
tctgcctactatctccagaacccaaaggaaagtgacatctattggattag
atcttgccttttatttaaggtgagaaggctttttgtatgcagaggataca
atgcatgcttcattatcttaggtgaggataaaaatacgtgtctgtggaaa
ggacttttaattcctataagaacctatttaagttttcttcaagctgatgt
ggtatgactgacctacactggagcagtcaaaatcagccagagctgctcct
tgaacacgtgcatgagttatctctgcatgctgatctccttggagagtata
aagttttatttatttatttttttctgcacctagatgtatacacaccacag
cacaagccttccataaatgtcctttttcttttcttctttttcttttctct
aggtatggaaaaacatgaaagacctgaaatcttttggccatcagaggaca
ataaagttgaaattgaatcaaagagattattgtttggttgattttggttt
tggttttggttttgtctggttttgttttaagtcatgaggaccaaattaaa
ctcatttttcagttctgaagtctggaacgtcttccggcggtctccatatt
gcaccccaatgcagctatagacttcttctatcaaagcagggctcccccct
ttcctcccacacaacagaacacacaaaggtatactagagggttcagactg
ctgcatccttgactggaacatctcagcttcctgaaactgctcaatcctga
cctgacacagtccagcatatacacaaatatgcagcctggtctgacaagta
taggagtcataggagggaaacgtccataggaaaatggtggacacggtgag
aaaaagggagagtgcagcttaaatgtcatgggcctaggaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132974394_132975571
seq2: B6Ng01-178J21.b_44_1227 (reverse)

seq1  GGATTG----AACACATGGGGCACTTCGAATGGCAAACTCTTGTCATTGT  46
      ||||||     ||||||||||||||  |||||||  |||||||||  || 
seq2  GGATTGGAAACACACATGGGGCACTCGGAATGGC--ACTCTTGTCCATGG  48

seq1  AAT-AAATCTTATAATAAATAGTTTCTTCACAATTAGTTTCTGTTTGCTC  95
      ||| ||||| |||||||||||||||| ||||| |  ||||| ||| ||| 
seq2  AATAAAATCCTATAATAAATAGTTTC-TCACATTAGGTTTCCGTTGGCT-  96

seq1  CTCTACA---AGAGACCCTGTCTTGTTTCTTGTTGAGGCGAGATGGATTT  142
      |||||||   |||||||   ||||||||||||||||||||||||||| ||
seq2  CTCTACAAGGAGAGACCTGTTCTTGTTTCTTGTTGAGGCGAGATGGA-TT  145

seq1  AGGTCTTTTAAAAGA-GGGTGT-GTACACAA-CCGGATCCTGGGT-AGAC  188
      ||||||||||||||| |||||| |||||||| |||||| |||||| ||||
seq2  AGGTCTTTTAAAAGAGGGGTGTGGTACACAACCCGGAT-CTGGGTAAGAC  194

seq1  AACAGTCTCCAAACAAGAGCAACCATAAAAATAAAACAACAGAAGGAAGG  238
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTCC-AACAAGAGCAACCATAAAAATAAAACAACAGAAGGAAGG  243

seq1  GAAGCCCTT-AATATGTGTGCTCATTTCTGAATGGGTTATATTCCCAAAG  287
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTTAAATATGTGTGCTCATTTCTGAATGGGTTATATTCCCAAAG  293

seq1  TTACAATGTAACAGCCACTGGGAGTGTTTTCCAGAAGAGATGCTGTTATA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGTAACAGCCACTGGGAGTGTTTTCCAGAAGAGATGCTGTTATA  343

seq1  TAATGGCAGAAAGCCCAAGCAGAAAAGCCTGTGGGTATAATACGGTGGAC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCAGAAAGCCCAAGCAGAAAAGCCTGTGGGTATAATACGGTGGAC  393

seq1  GTGTCTTGGGTTTTCAATAAGTGCAGTAATATGTCATGAATGTCTCCTAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGGGTTTTCAATAAGTGCAGTAATATGTCATGAATGTCTCCTAT  443

seq1  CAGAAACACAGTAGTCTTTCTACGGTGACAGAATTAATGGAATAACAGTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACAGTAGTCTTTCTACGGTGACAGAATTAATGGAATAACAGTA  493

seq1  AATTGAGACGCTGCATGGGGTTTATGGAGCCCCACTTTACCCCTGACTAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGACGCTGCATGGGGTTTATGGAGCCCCACTTTACCCCTGACTAC  543

seq1  TGGCGCAGGCAAACACAGGTTCTTTGTGCACAGGTGCATGCCAGCAGTAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCAGGCAAACACAGGTTCTTTGTGCACAGGTGCATGCCAGCAGTAT  593

seq1  GACGTCTTGATCCTTGGGTGCTGTTTATTGTATTTTTTGAGGCAGAGCGT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCTTGATCCTTGGGTGCTGTTTATTGTATTTTTTGAGGCAGAGCGT  643

seq1  GTCACTGATCTGGAGGTAGGTGAGGCTAGATGGCCAGGGGCCACCGAGAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGATCTGGAGGTAGGTGAGGCTAGATGGCCAGGGGCCACCGAGAT  693

seq1  CTGTTGGTCTCTGCCTCCCCAGGACTGGGACAATAAGCATGCACCATCCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTCTCTGCCTCCCCAGGACTGGGACAATAAGCATGCACCATCCT  743

seq1  GCTTGGTTTTGTTACCTGGGTTCTGGGGAGCAAACTCACATCCTACTGCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTTTTGTTACCTGGGTTCTGGGGAGCAAACTCACATCCTACTGCT  793

seq1  TGCTTGCACAGCCAAGGGTTTTGCCAATTTAGTTATCTCCCCAGCTCAAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCACAGCCAAGGGTTTTGCCAATTTAGTTATCTCCCCAGCTCAAA  843

seq1  CCAGGCTCTCGATTCCAATCTTAGTTACTGCTAACTCCAAGGTCACGCAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCTCGATTCCAATCTTAGTTACTGCTAACTCCAAGGTCACGCAT  893

seq1  ACACACCCTGTGGTAAATACATCTCTATGTGTAGGTTACAGAATGGCTGC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCTGTGGTAAATACATCTCTATGTGTAGGTTACAGAATGGCTGC  943

seq1  AGAAGAGTTAAAAGAGGCTGTAGCTGTTTTAGGGCTTCCCAGTGTCTATA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTTAAAAGAGGCTGTAGCTGTTTTAGGGCTTCCCAGTGTCTATA  993

seq1  CAAAAAGGCAGAAACTGGCTGTTGCAGATGCAGAGAGAATCACTGCAGGT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGCAGAAACTGGCTGTTGCAGATGCAGAGAGAATCACTGCAGGT  1043

seq1  GTTTGTTCAAGGTGCTGGGAAATCAGATAAGTCAGAGGTTTGAACCAGGC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCAAGGTGCTGGGAAATCAGATAAGTCAGAGGTTTGAACCAGGC  1093

seq1  CGAGAGCCACGGGGTCAGAGTTGAGCTGAGCTTCGTGGTTAAGTCAGGTT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCCACGGGGTCAGAGTTGAGCTGAGCTTCGTGGTTAAGTCAGGTT  1143

seq1  GTCCATGTGAAGGGTTGAGAGGGAGTGGGCCAGAAGAATTC  1178
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTGAAGGGTTGAGAGGGAGTGGGCCAGAAGAATTC  1184

seq1: chr3_132821901_132822982
seq2: B6Ng01-178J21.g_64_1156

seq1  GAATTCTGTAGCAGGCTCTGTTCTCTTAGGAATCAAATGTTTATTGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGCAGGCTCTGTTCTCTTAGGAATCAAATGTTTATTGAAGG  50

seq1  CACATATGTTTACTCATACCAGAGCAGCTTCTGAGAGGCAGTCAGGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGTTTACTCATACCAGAGCAGCTTCTGAGAGGCAGTCAGGAGGG  100

seq1  TTATGGGTCCAAGCTTGCTGCCTCTCCAGGTCCTTGGGGCGCTGGGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGTCCAAGCTTGCTGCCTCTCCAGGTCCTTGGGGCGCTGGGGTTA  150

seq1  GACTGAAGGCAATCGAAGGAGCCAGTTCTTCATGTTTTGTGTGCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGGCAATCGAAGGAGCCAGTTCTTCATGTTTTGTGTGCTTTCTT  200

seq1  TCTGCCTACTATCTCCAGAACCCAAAGGAAAGTGACATCTATTGGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTACTATCTCCAGAACCCAAAGGAAAGTGACATCTATTGGATTAG  250

seq1  ATCTTGCCTTTTATTTAAGGTGAGAAGGCTTTTTGTATGCAGAGGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCTTTTATTTAAGGTGAGAAGGCTTTTTGTATGCAGAGGATACA  300

seq1  ATGCATGCTTCATTATCTTAGGTGAGGATAAAAATACGTGTCTGTGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTTCATTATCTTAGGTGAGGATAAAAATACGTGTCTGTGGAAA  350

seq1  GGACTTTTAATTCCTATAAGAACCTATTTAAGTTTTCTTCAAGCTGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTAATTCCTATAAGAACCTATTTAAGTTTTCTTCAAGCTGATGT  400

seq1  GGTATGACTGACCTACACTGGAGCAGTCAAAATCAGCCAGAGCTGCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGACTGACCTACACTGGAGCAGTCAAAATCAGCCAGAGCTGCTCCT  450

seq1  TGAACACGTGCATGAGTTATCTCTGCATGCTGATCTCCTTGGAGAGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACGTGCATGAGTTATCTCTGCATGCTGATCTCCTTGGAGAGTATA  500

seq1  AAGTTTTATTTATTTATTTTTTTCTGCACCTAGATGTATACACACCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTATTTATTTATTTTTTTCTGCACCTAGATGTATACACACCACAG  550

seq1  CACAAGCCTTCCATAAATGTCCTTTTTCTTTTCTTCTTTTTCTTTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCTTCCATAAATGTCCTTTTTCTTTTCTTCTTTTTCTTTTCTCT  600

seq1  AGGTATGGAAAAACATGAAAGACCTGAAATCTTTTGGCCATCAGAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGGAAAAACATGAAAGACCTGAAATCTTTTGGCCATCAGAGGACA  650

seq1  ATAAAGTTGAAATTGAATCAAAGAGATTATTGTTTGGTTGATTTTGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTGAAATTGAATCAAAGAGATTATTGTTTGGTTGATTTTGGTTT  700

seq1  TGGTTTTGGTTTTGTCTGGTTTTGTTTTAAGTCATGAGGACCAAATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGGTTTTGTCTGGTTTTGTTTTAAGTCATGAGGACCAAATTAAA  750

seq1  CTCA-TTTTCAGTTCTGAAGTCTGGAACGTCTTCCGGCGGTCTCCATATT  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTCAGTTCTGAAGTCTGGAACGTCTTCCGGCGGTCTCCATATT  800

seq1  GCACCCCAATGCAGCTATAGACTTCTTCTATCAAAGCAGGGCTCCCCCC-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCACCCCAATGCAGCTATAGACTTCTTCTATCAAAGCAGGGCTCCCCCCT  850

seq1  TTCCTCCCACACAACAGAACACACAAAGGTATACTAGA-GGTTCAGACTG  897
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCCTCCCACACAACAGAACACACAAAGGTATACTAGAGGGTTCAGACTG  900

seq1  CTGCAT-CTTGACTGGAACATCTCAGCTTCCTGAAACTGCTCAATCCCTG  946
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGCATCCTTGACTGGAACATCTCAGCTTCCTGAAACTGCTCAAT-CCTG  949

seq1  ACCTGACACAGTCCAGCATATACAC-AATATGCAGCCT-GTCTGAC-AGT  993
      ||||||||||||||||||||||||| |||||||||||| ||||||| |||
seq2  ACCTGACACAGTCCAGCATATACACAAATATGCAGCCTGGTCTGACAAGT  999

seq1  ATA-GAGTCATTAAGAGGG-AACGTCCATAGGAAAATG--TGACAAGGTG  1039
      ||| |||||| || ||||| ||||||||||||||||||   |||| ||||
seq2  ATAGGAGTCA-TAGGAGGGAAACGTCCATAGGAAAATGGTGGACACGGTG  1048

seq1  AGAAAAA-GGAGAGTG-AGCTTTAAATGTCATGTG-CTAGGAAACA  1082
      ||||||| |||||||| ||| |||||||||||| | ||||||||||
seq2  AGAAAAAGGGAGAGTGCAGC-TTAAATGTCATGGGCCTAGGAAACA  1093