BAC Information

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BAC

Clone NameB6Ng01-178P24
Chromosome3 (Build37)
Map Location 55,659,835 - 55,799,496
singlet/doubletdoublet
Overlap genenone
Upstream gene6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178P24.bB6Ng01-178P24.g
ACCGA005838GA005839
length1,152293
definitionB6Ng01-178P24.b B6Ng01-178P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,659,835 - 55,660,983)(55,799,204 - 55,799,496)
sequence
gaattcagttaaaattctaaaatcttatttagttgacatgtgaataaaga
ttttttttgagttctgatattttatatacaaatatattttcaaaaaagag
agaattcgattttttctagcaatcaaaagtactgcacaataccttgataa
atatctaatattattattgttcatattatatgaaacttaactttggtaaa
ccatttgtcactctgtctgtccgcccatccatccatccatccatccatcc
atccatccatccatccatccatctttatctatctatccatccatcagact
atatcaacaactcttactgatactttaagcagtgtttaaaaacagtatct
aacatgccacacatcaagcacctgctgtccacttggccaatgaagtggtg
tctgtgcgtatgaaagcaacaattgctatttttctattccatgttgctca
gctgtagaactcagagctcaccacacttagtccatcactgtgcatgattc
atagggctactctgctgagagaaatacccactgaagctccaatggcagac
tctctgctctagctgcacgtattgtcatgatgcaccaggaaaatgaaatg
ttgtagttattacttctcagaccactaggagcttgtgcaagtcaaatatt
acagcatgtatgtatttctgaaatatgctgttttataaattaagtgacct
gaaattctgaataacggctctttttaaatagtgaaattaggagatccatt
gaatactttgagtccataaaaccacacaaagcatccacattcaccaagat
gttatgtaaaacactaacagcttaaaaacaatagcatcctggttttgtct
ttacagtaactgaaaatagtgtcatcccacccttcccccatggtgaagaa
tatgacagagtgacaaggcataaatgaatcagtctgacactgggaaaatc
ctttaaagcagggcctgaaatgccttcagtggtattttctcttttgtatg
tttatgttaggcacaaatgagtgatgcttgacgatacaaacttacctcaa
acttctgcatgcttatgtacatcctccttgcttctctttgtctggtcaaa
taactcagcttcattgcaacacgactatgtggttcccttcaatagcatgg
ca

ttggggagtttgaggcaactttgatctacagaatgagttccagaccacaa
gactacatagtgatgctctatcaatctttgaatgaatggctacacatgga
gatactcaaggagtatgaaggaagaaaggaaggaaggaaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagtttag
atcacttactaggaagtttgatcagtgtttgctttgtgaaagggatatta
ttttgttgagttttagagttaagttttccagagctagtccgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55659835_55660983
seq2: B6Ng01-178P24.b_40_1191

seq1  GAATTCAGTTAAAATTCTAAAATCTTATTTAGTTGACATGTGAATAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAAAATTCTAAAATCTTATTTAGTTGACATGTGAATAAAGA  50

seq1  TTTTTTTTGAGTTCTGATATTTTATATACAAATATATTTTCAAAAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGAGTTCTGATATTTTATATACAAATATATTTTCAAAAAAGAG  100

seq1  AGAATTCGATTTTTTCTAGCAATCAAAAGTACTGCACAATACCTTGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCGATTTTTTCTAGCAATCAAAAGTACTGCACAATACCTTGATAA  150

seq1  ATATCTAATATTATTATTGTTCATATTATATGAAACTTAACTTTGGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATATTATTATTGTTCATATTATATGAAACTTAACTTTGGTAAA  200

seq1  CCATTTGTCACTCTGTCTGTCCGCCCATCCATCCATCCATCCATCCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTCACTCTGTCTGTCCGCCCATCCATCCATCCATCCATCCATCC  250

seq1  ATCCATCCATCCATCCATCCATCTTTATCTATCTATCCATCCATCAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCATCCATCCATCCATCTTTATCTATCTATCCATCCATCAGACT  300

seq1  ATATCAACAACTCTTACTGATACTTTAAGCAGTGTTTAAAAACAGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACAACTCTTACTGATACTTTAAGCAGTGTTTAAAAACAGTATCT  350

seq1  AACATGCCACACATCAAGCACCTGCTGTCCACTTGGCCAATGAAGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCCACACATCAAGCACCTGCTGTCCACTTGGCCAATGAAGTGGTG  400

seq1  TCTGTGCGTATGAAAGCAACAATTGCTATTTTTCTATTCCATGTTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCGTATGAAAGCAACAATTGCTATTTTTCTATTCCATGTTGCTCA  450

seq1  GCTGTAGAACTCAGAGCTCACCACACTTAGTCCATCACTGTGCATGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGAACTCAGAGCTCACCACACTTAGTCCATCACTGTGCATGATTC  500

seq1  ATAGGGCTACTCTGCTGAGAGAAATACCCACTGAAGCTCCAATGGCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCTACTCTGCTGAGAGAAATACCCACTGAAGCTCCAATGGCAGAC  550

seq1  TCTCTGCTCTAGCTGCACGTATTGTCATGATGCACCAGGAAAATGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTCTAGCTGCACGTATTGTCATGATGCACCAGGAAAATGAAATG  600

seq1  TTGTAGTTATTACTTCTCAGACCACTAGGAGCTTGTGCAAGTCAAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTATTACTTCTCAGACCACTAGGAGCTTGTGCAAGTCAAATATT  650

seq1  ACAGCATGTATGTATTTCTGAAATATGCTGTTTTATAAATTAAGTGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGTATGTATTTCTGAAATATGCTGTTTTATAAATTAAGTGACCT  700

seq1  GAAATTCTGAATAACGGCTCTTTTTAAATAGTGAAATTAGGAGATCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTGAATAACGGCTCTTTTTAAATAGTGAAATTAGGAGATCCATT  750

seq1  GAATACTTTGAGTCCATAAAACCACACAAAGCATCCACATTCACCAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTTGAGTCCATAAAACCACACAAAGCATCCACATTCACCAAGAT  800

seq1  GTTATGTAAAACACTAACAGCTTAAAAACAATAGCATCCTGGTTTTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTAAAACACTAACAGCTTAAAAACAATAGCATCCTGGTTTTGTCT  850

seq1  TTACAGTAACTGAAAATAGTGTCATCCCACCCTTCCCCCATGGTGAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAACTGAAAATAGTGTCATCCCACCCTTCCCCCATGGTGAAGAA  900

seq1  TATGACAGAGTGACAAGGCATAAATGAATCAGTCTGACACTGGGAAAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGAGTGACAAGGCATAAATGAATCAGTCTGACACTGGGAAAATC  950

seq1  CTTTAAAGCAGGGCCTGAAATGCCTTCAGTGGTATTTTCTTCTTTGTATG  1000
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  CTTTAAAGCAGGGCCTGAAATGCCTTCAGTGGTATTTTCTCTTTTGTATG  1000

seq1  TTTTATGTTAGGCAACAAATGAGTGATGCTTGACGATACAAACTTACCTC  1050
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -TTTATGTTAGGC-ACAAATGAGTGATGCTTGACGATACAAACTTACCTC  1048

seq1  AAAC-TCTGCATGCTTATGTACATCCT-----CTGCTCTCTGTCTGTTCA  1094
      |||| ||||||||||||||||||||||     || |||| |||||| |||
seq2  AAACTTCTGCATGCTTATGTACATCCTCCTTGCTTCTCTTTGTCTGGTCA  1098

seq1  AAATAAACTCAGCTTCATTTGCAACACGGACTATGTGGT--CCTTC-ATA  1141
      ||   |||||||||||| ||||||||| |||||||||||  ||||| |||
seq2  AA--TAACTCAGCTTCA-TTGCAACAC-GACTATGTGGTTCCCTTCAATA  1144

seq1  GCATGGCA  1149
      ||||||||
seq2  GCATGGCA  1152


seq1: chr3_55799204_55799496
seq2: B6Ng01-178P24.g_68_360 (reverse)

seq1  AACTGACTAGCTCTGGAAAACTTAACTCTAAAACTCAACAAAATAATATC  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGACTAGCTCTGGAAAACTTAACTCTAAAACTCAACAAAATAATATC  50

seq1  CCTTTCACAAAGCAAACACTGATCAAACTTCCTAGTAAGTGATCTAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACAAAGCAAACACTGATCAAACTTCCTAGTAAGTGATCTAAACT  100

seq1  CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  150

seq1  TTCCTTCCTTCCTTCCTTTCTTCCTTCATACTCCTTGAGTATCTCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTTCTTCCTTCATACTCCTTGAGTATCTCCATGT  200

seq1  GTAGCCATTCATTCAAAGATTGATAGAGCATCACTATGTAGTCTTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCATTCATTCAAAGATTGATAGAGCATCACTATGTAGTCTTGTGGT  250

seq1  CTGGAACTCATTCTGTAGATCAAAGTTGCCTCAAACTCCCCAA  293
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCATTCTGTAGATCAAAGTTGCCTCAAACTCCCCAA  293


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