BAC Information

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BAC

Clone NameB6Ng01-181L22
Chromosome3 (Build37)X (Build37)
Map Location 5,284,067 - 5,284,246141,405,108 - 141,406,100
singlet/doubletsingletsinglet
Overlap geneZfhx4
Upstream geneLOC620283
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181L22.bB6Ng01-181L22.g
ACCGA007824GA007825
length720990
definitionB6Ng01-181L22.b B6Ng01-181L22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,284,067 - 5,284,246)(141,405,108 - 141,406,100)
sequence
gaattctttgtttagctctgatcctcatttttaatggggttatttgaatt
tctggagtccagcttcttgagctctttgtatatattggatattagtaccc
tatcagatttgggattgataaaaatcctttcctaatttgttggtggcctt
tttgtcttattgacagtgtcttttgcgttacagaagctttgcaatcttat
gaggtcccatttgtcaattcttgatcttacagcacaagccattgctgttt
tgttcaggaaattttcccctctgcccatatctttgaggcttttccccact
ttctcctccattaatttcagtgtctctggtattatgtggagatctttgat
ccacttagacttgagctttgtacaaggagataagaatggatcaatttgca
ttcttctatgtgataactgccagttgtgccagcaccatttgttggaaatg
ctgtcttttttccactggatggttttaactcccttgtcaaagatcaagtg
actataggtgtgtggattcatttctgggtgtccaattctattccattgat
ctacctgtctgtcactgtaacagtaccatgcagtttttaatcacaattgc
tctgtagtacagctttaatgtcaggcatggtgattccagcagaggttctt
ttattatactcaattcttaagagccacacaggagaggctactaagagcaa
cacctgcagagagagagaga

gaattcaggtggacattgggcactaggttggtttgcaggatgtgcatcct
ggtccatgccttgagtcttggagaaggatatgtaggatctgactggttct
ccacatagcatgtgcttccctatctgtctggttctggatcagataatgca
attcctggtggaaggcagaagttatttgttgtccagactaggccaggaca
ctgggtatgaaatctaagctagatcctgtgggcaatggaaagaacgtttg
gagtgggtaaagcatctgttggacattttggttacaccctggagaaggca
tcatgtttgttctaaaatttgtttgtttgttttaatgcaagtgtacaagt
tgtgcttctaattaccatgataaaaataaatacaaaaagctcatggtttg
cacaggtatatttcaatatgatgaggaaagcataaccatgttcacagtta
tttgctgctttggcagtcagaacaaaaagctgcttgtttatgttatggta
tgttggaaaacattggatttggtctagaatcatgttgggccacaaatcaa
aagacaggttaccagtatccctcttcccccagtgagactctttttggtag
gtggtacacaagtttcctaaaacattgcccccagctgaggaccaactttt
caaatggacaagcctaaaagaatgtttcatttctgaaccctaacagtagc
taactgtttaggaatcatttatttcattagcagttaacaaactggatgct
tgcttggtcttcactcttcaaatgttctagtatagggaatattttaacag
tcctaccctactgaaccagttatagatagagaagattgaatcttccaact
tggaaaaactattgttcttcttcttcttcttcttcatcctcttcttctcc
tcttcttccttcttctccttcttcttcttcttctctcttctctcttctca
tcttctttgaatctcctacttgtaaaaactattggttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5284067_5284246
seq2: B6Ng01-181L22.b_368_547 (reverse)

seq1  TCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGGAAAAAGACA  50
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TCACTTGATCTTTGACAAGGGAGTTAAAACCATCCAGTGGAAAAAAGACA  50

seq1  GCATTTTCAACAAATGGTGCTGGCACAACTGACAGTTATCAAGTAGAAGA  100
      |||||| |||||||||||||||||||||||| |||||||||  |||||||
seq2  GCATTTCCAACAAATGGTGCTGGCACAACTGGCAGTTATCACATAGAAGA  100

seq1  ATGTGAATTGATCCATTCTTATTTCCTTGTACAAAGCTCAAATCCAAGTG  150
      |||  ||||||||||||||||| |||||||||||||||||| || |||||
seq2  ATGCAAATTGATCCATTCTTATCTCCTTGTACAAAGCTCAAGTCTAAGTG  150

seq1  GATCAAAGACCTCCACATAAGACCAGAGAC  180
      ||||||||| |||||||||| |||||||||
seq2  GATCAAAGATCTCCACATAATACCAGAGAC  180


seq1: chrX_141405108_141406100
seq2: B6Ng01-181L22.g_64_1053

seq1  GAATTCAGGTGGACATTGGGCACTAGGTTGGTTTGCAGGATGTGCATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGGACATTGGGCACTAGGTTGGTTTGCAGGATGTGCATCCT  50

seq1  GGTCCATGCCTTGAGTCTTGGAGAAGGATATGTAGGATCTGACTGGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGCCTTGAGTCTTGGAGAAGGATATGTAGGATCTGACTGGTTCT  100

seq1  CCACATAGCATGTGCTTCCCTATCTGTCTGGTTCTGGATCAGATAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAGCATGTGCTTCCCTATCTGTCTGGTTCTGGATCAGATAATGCA  150

seq1  ATTCCTGGTGGAAGGCAGAAGTTATTTGTTGTCCAGACTAGGCCAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGTGGAAGGCAGAAGTTATTTGTTGTCCAGACTAGGCCAGGACA  200

seq1  CTGGGTATGAAATCTAAGCTAGATCCTGTGGGCAATGGAAAGAACGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATGAAATCTAAGCTAGATCCTGTGGGCAATGGAAAGAACGTTTG  250

seq1  GAGTGGGTAAAGCATCTGTTGGACATTTTGGTTACACCCTGGAGAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTAAAGCATCTGTTGGACATTTTGGTTACACCCTGGAGAAGGCA  300

seq1  TCATGTTTGTTCTAAAATTTGTTTGTTTGTTTTAATGCAAGTGTACAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTGTTCTAAAATTTGTTTGTTTGTTTTAATGCAAGTGTACAAGT  350

seq1  TGTGCTTCTAATTACCATGATAAAAATAAATACAAAAAGCTCATGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTAATTACCATGATAAAAATAAATACAAAAAGCTCATGGTTTG  400

seq1  CACAGGTATATTTCAATATGATGAGGAAAGCATAACCATGTTCACAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTATATTTCAATATGATGAGGAAAGCATAACCATGTTCACAGTTA  450

seq1  TTTGCTGCTTTGGCAGTCAGAACAAAAAGCTGCTTGTTTATGTTATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCTTTGGCAGTCAGAACAAAAAGCTGCTTGTTTATGTTATGGTA  500

seq1  TGTTGGAAAACATTGGATTTGGTCTAGAATCATGTTGGGCCACAAATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAAACATTGGATTTGGTCTAGAATCATGTTGGGCCACAAATCAA  550

seq1  AAGACAGGTTACCAGTATCCCTCTTCCCCCAGTGAGACTCTTTTTGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGTTACCAGTATCCCTCTTCCCCCAGTGAGACTCTTTTTGGTAG  600

seq1  GTGGTACACAAG-TTCCTAAAACATTGCCCCCAGCTGAGGACCAACTTTT  649
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGGTACACAAGTTTCCTAAAACATTGCCCCCAGCTGAGGACCAACTTTT  650

seq1  CAAATGGACAAGCCTAAAAGAATGTTTCATTTCTGAACCCTAACAGTAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGACAAGCCTAAAAGAATGTTTCATTTCTGAACCCTAACAGTAGC  700

seq1  TAACTGTTTAGGAAATCATTTATTTCATTAGCAGTTAACAAACTGGATGC  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTTAGG-AATCATTTATTTCATTAGCAGTTAACAAACTGGATGC  749

seq1  TTGCTTGGTCTTCACTCTTCAAATGTTCTAGTATAGGGAATATTTTAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGTCTTCACTCTTCAAATGTTCTAGTATAGGGAATATTTTAACA  799

seq1  GTCCTACCCTACTGAACCAGTTATAGATAGAGAAGATTGAATC-TCCAAC  848
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCCTACCCTACTGAACCAGTTATAGATAGAGAAGATTGAATCTTCCAAC  849

seq1  -TGGAAAAACTATTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  897
       |||||||||||||| ||||||||||||||||||||| || |||||||| 
seq2  TTGGAAAAACTATTG-TTCTTCTTCTTCTTCTTCTTCATCCTCTTCTTC-  897

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT-TCTTCTTCTT  946
      || ||||||||  |||||||| ||||||||||||||||| ||||||   |
seq2  TCCTCTTCTTC--CTTCTTCTCCTTCTTCTTCTTCTTCTCTCTTCT--CT  943

seq1  CTTCTTCTTCTTCTTTGAATCTCCAAC-TGGAAAAACTATTGTTTCTT  993
      |||| || |||||||||||||||| || || ||||||||||| |||||
seq2  CTTC-TCATCTTCTTTGAATCTCCTACTTGTAAAAACTATTGGTTCTT  990


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