BAC Information

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BAC

Clone NameB6Ng01-183B22
Chromosome3 (Build37)
Map Location 145,665,230 - 145,779,352
singlet/doubletdoublet
Overlap geneSyde2, Wdr63
Upstream geneClca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik
Downstream geneMcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183B22.bB6Ng01-183B22.g
ACCGA008830GA008831
length8341,003
definitionB6Ng01-183B22.b B6Ng01-183B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,665,230 - 145,666,059)(145,778,365 - 145,779,352)
sequence
gaattctctgcacggcctggataagaaccgcgaagcggtgatgttcggag
tcgacattcaaaaagttgtagagaaagaaaacgtaggcttgatggtgccg
ctgctgatacagaaatgcatcgtggagattgaaaagaggggttgtcaggt
attgtactgtttctctgctttttcctttattgattggttgttaggtcttg
ggaaaaggaattcaaggtaaggctaagtggggagaaaagatttagatatt
tccccggccctgcgttacatcgtcaccatcatcatcaccaccaccaccat
caccgccatcattattttggagtgtgtttcctgtcttaactttcgttgct
gtgatttgagagcatgctacacagatctgcagtttacgttgtgaagtgtg
tgggctttagggctggaaaggactagattttctttacagtgacttgtcag
gagaagctgatgacacagaaaggctcagctctttaacaggaatttctgca
tgctttgaaattctggggcagttcaacagtggattccagggtctggcttc
acatccatgtttaaccccgtgcttactccctaccatcagtcctacttggc
gtgtgatcacacttgcctctttactccggggctgcactccagatgcggag
agctcctacagataagaacgcgtgtccacgtccacattttgttttgtttt
tttactatttatgtatatgagtattttgcctgcatgatgtgtgcctgggg
gcacagaggcctgaagagtgtgttgtatgcccccagaactagacttgtag
acaatggtgaagtagctatcttgggtgctaggag
gaattcttttgaaacgtttaatattggctcgacaacgacacatcaggacc
agcaaagactttggctaatcttaattacaatcacctgagatttgttttag
tttattgttttatttttattatcttgggacgtgaatacttacttggaagg
gaagatagcattcataatcaagatggtagttttcccagggtgaggtctat
ccactgcatttcagatattctgacccttgtgactttctcaaatgtgggaa
agtgcagaatttgtggtagtgggcaagctttcccctaaaaaccataaata
gttttttattgtaaaataagtagaattttctaatggagtagtctacaaac
tatatccagagcagacagaccattttgcaaactttttttttcaactccta
gatcagttcgcacaggcaatttataaatagaactgtcctcttctgtgtct
ttttatgtgtgcagtggtttttttttttttttagatttgttttgcaatgg
tgtgcaaaaagtttattctgttcattagcctgaatcccaagtgtgatgta
tagacaagctagatactcagaggatataattagcacactgtattctcgag
tgcaatttggaagaataatttaacctctgatgcccctctgtccctgcaca
gattaacactgtcttcttactacagctgaagttatccttgtagcaagtat
tcaaaatgtacaattgttcagaagcaaatctgagtttcagagaggtttgc
agaaataaagtgatggcttttccctgagccctagtgcaactgagctgtct
tactagggaacaagaaacaggttttagagtcaggtccagtgaggggccca
aatttcttctatgtggcttactgacttatttgtaagaatcattactctct
cccgctcgccacctcctttcggtgcttaatcttccctaatgaatgggacg
gtgggccattggatttacaggaacacatggggaagcgctctatgttttta
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145665230_145666059
seq2: B6Ng01-183B22.b_48_881

seq1  GAATTCTCTGCACGGCCTGGATAAGAACCGCGAAGCGGTGATGTTCGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCACGGCCTGGATAAGAACCGCGAAGCGGTGATGTTCGGAG  50

seq1  TCGACATTCAAAAAGTTGTAGAGAAAGAAAACGTAGGCTTGATGGTGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACATTCAAAAAGTTGTAGAGAAAGAAAACGTAGGCTTGATGGTGCCG  100

seq1  CTGCTGATACAGAAATGCATCGTGGAGATTGAAAAGAGGGGTTGTCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATACAGAAATGCATCGTGGAGATTGAAAAGAGGGGTTGTCAGGT  150

seq1  ATTGTACTGTTTCTCTGCTTTTTCCTTTATTGATTGGTTGTTAGGTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTGTTTCTCTGCTTTTTCCTTTATTGATTGGTTGTTAGGTCTTG  200

seq1  GGAAAAGGAATTCAAGGTAAGGCTAAGTGGGGAGAAAAGATTTAGATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGAATTCAAGGTAAGGCTAAGTGGGGAGAAAAGATTTAGATATT  250

seq1  TCCCCGGCCCTGCGTTACATCGTCACCATCATCATCACCACCACCACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGGCCCTGCGTTACATCGTCACCATCATCATCACCACCACCACCAT  300

seq1  CACCGCCATCATTATTTTGGAGTGTGTTTCCTGTCTTAACTTTCGTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCCATCATTATTTTGGAGTGTGTTTCCTGTCTTAACTTTCGTTGCT  350

seq1  GTGATTTGAGAGCATGCTACACAGATCTGCAGTTTACGTTGTGAAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTGAGAGCATGCTACACAGATCTGCAGTTTACGTTGTGAAGTGTG  400

seq1  TGGGCTTTAGGGCTGGAAAGGACTAGATTTTCTTTACAGTGACTTGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTAGGGCTGGAAAGGACTAGATTTTCTTTACAGTGACTTGTCAG  450

seq1  GAGAAGCTGATGACACAGAAAGGCTCAGCTCTTTAACAGGAATTTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTGATGACACAGAAAGGCTCAGCTCTTTAACAGGAATTTCTGCA  500

seq1  TGCTTTGAAATTCTGGGGCAGTTCAACAGTGGATTCCAGGGTCTGGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGAAATTCTGGGGCAGTTCAACAGTGGATTCCAGGGTCTGGCTTC  550

seq1  ACATCCATGTTTAACCCCGTGCTTACTCCCTACCATCAGTCCTACTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATGTTTAACCCCGTGCTTACTCCCTACCATCAGTCCTACTTGGC  600

seq1  GTGTGATCACACTTGCCTCTTTACTCCGGGGCTGCACTCCAGATGCGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATCACACTTGCCTCTTTACTCCGGGGCTGCACTCCAGATGCGGAG  650

seq1  AGCTCCTACAGATAAGAACGCGTGTCCACGTCCACATTTTGTTTTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTACAGATAAGAACGCGTGTCCACGTCCACATTTTGTTTTGTTTT  700

seq1  TTTACTATTTATGTATATGAGTATTTTGCCTGCATGATGTGTGCCT-GGG  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTACTATTTATGTATATGAGTATTTTGCCTGCATGATGTGTGCCTGGGG  750

seq1  GCACAGAGGCCTGAAGAGTGTGTTGGATG-CCCCAGAACTAGACTTGTAG  798
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  GCACAGAGGCCTGAAGAGTGTGTTGTATGCCCCCAGAACTAGACTTGTAG  800

seq1  ACAATGGTG-AGTAGCTATC-TGGGTGCTAGGAG  830
      ||||||||| |||||||||| |||||||||||||
seq2  ACAATGGTGAAGTAGCTATCTTGGGTGCTAGGAG  834

seq1: chr3_145778365_145779352
seq2: B6Ng01-183B22.g_68_1070 (reverse)

seq1  ACAT-AAAACAT-GAGCGCTT-CCCATGTG-TCCTGTTAAT-CAATGG-C  44
      |||| ||||||| |||||||| |||||||| |||||| ||| |||||| |
seq2  ACATAAAAACATAGAGCGCTTCCCCATGTGTTCCTGTAAATCCAATGGCC  50

seq1  CACCGTCCCTTTCATTAGGG-AGATTAGGCA-CGAAAGGAGGTGGCGAGC  92
      ||||||||| |||||||||| |||||| ||| ||||||||||||||||||
seq2  CACCGTCCCATTCATTAGGGAAGATTAAGCACCGAAAGGAGGTGGCGAGC  100

seq1  GGGAGAGAGTAATGATTCTTACAAATAAGTCAGTAAGCCACATAGAAG-A  141
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGAGAGAGTAATGATTCTTACAAATAAGTCAGTAAGCCACATAGAAGAA  150

seq1  ATTTGGG-CCCTCACTGGA-CTGACTCTAAAACCTGTTTCTTGTTCCCTA  189
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTTGGGCCCCTCACTGGACCTGACTCTAAAACCTGTTTCTTGTTCCCTA  200

seq1  GT-AGACAGCTCAGTTGCACTAGGGCTCAGGG-AAAGCCATCAC-TTATT  236
      || ||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GTAAGACAGCTCAGTTGCACTAGGGCTCAGGGAAAAGCCATCACTTTATT  250

seq1  TCTGCAAACCTCTCTGAAACTCAGA-TTGCTTCTGAACAATTGTACATTT  285
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTGCAAACCTCTCTGAAACTCAGATTTGCTTCTGAACAATTGTACATTT  300

seq1  TGAATACTTGCTACAAGGATAACTTCAGCTGTAGTAAGAAGACAGTGTTA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTTGCTACAAGGATAACTTCAGCTGTAGTAAGAAGACAGTGTTA  350

seq1  ATCTGTGCAGGGACAGAGGGGCATCAGAGGTTAAATTATTCTTCCAAATT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCAGGGACAGAGGGGCATCAGAGGTTAAATTATTCTTCCAAATT  400

seq1  GCACTCGAGAATACAGTGTGCTAATTATATCCTCTGAGTATCTAGCTTGT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGAGAATACAGTGTGCTAATTATATCCTCTGAGTATCTAGCTTGT  450

seq1  CTATACATCACACTTGGGATTCAGGCTAATGAACAGAATAAACTTTTTGC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATCACACTTGGGATTCAGGCTAATGAACAGAATAAACTTTTTGC  500

seq1  ACACCATTGCAAAACAAATCTAAAAAAAAAAAAAAACCACTGCACACATA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTGCAAAACAAATCTAAAAAAAAAAAAAAACCACTGCACACATA  550

seq1  AAAAGACACAGAAGAGGACAGTTCTATTTATAAATTGCCTGTGCGAACTG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACAGAAGAGGACAGTTCTATTTATAAATTGCCTGTGCGAACTG  600

seq1  ATCTAGGAGTTGAAAAAAAAAGTTTGCAAAATGGTCTGTCTGCTCTGGAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGAGTTGAAAAAAAAAGTTTGCAAAATGGTCTGTCTGCTCTGGAT  650

seq1  ATAGTTTGTAGACTACTCCATTAGAAAATTCTACTTATTTTACAATAAAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGTAGACTACTCCATTAGAAAATTCTACTTATTTTACAATAAAA  700

seq1  AACTATTTATGGTTTTTAGGGGAAAGCTTGCCCACTACCACAAATTCTGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTATGGTTTTTAGGGGAAAGCTTGCCCACTACCACAAATTCTGC  750

seq1  ACTTTCCCACATTTGAGAAAGTCACAAGGGTCAGAATATCTGAAATGCAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCACATTTGAGAAAGTCACAAGGGTCAGAATATCTGAAATGCAG  800

seq1  TGGATAGACCTCACCCTGGGAAAACTACCATCTTGATTATGAATGCTATC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGACCTCACCCTGGGAAAACTACCATCTTGATTATGAATGCTATC  850

seq1  TTCCCTTCCAAGTAAGTATTCACGTCCCAAGATAATAAAAATAAAACAAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCAAGTAAGTATTCACGTCCCAAGATAATAAAAATAAAACAAT  900

seq1  AAACTAAAACAAATCTCAGGTGATTGTAATTAAGATTAGCCAAAGTCTTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAACAAATCTCAGGTGATTGTAATTAAGATTAGCCAAAGTCTTT  950

seq1  GCTGGTCCTGATGTGTCGTTGTCGAGCCAATATTAAACGTTTCAAAAGAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCCTGATGTGTCGTTGTCGAGCCAATATTAAACGTTTCAAAAGAA  1000

seq1  TTC  988
      |||
seq2  TTC  1003