BAC Information

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BAC

Clone NameB6Ng01-183N18
Chromosome3 (Build37)
Map Location 108,476,961 - 108,642,426
singlet/doubletdoublet
Overlap geneClcc1, Gpsm2, 4921525H12Rik, Stxbp3a
Upstream geneAhcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166
Downstream geneFndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3, Ntng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183N18.bB6Ng01-183N18.g
ACCGA009379GA009380
length719458
definitionB6Ng01-183N18.b B6Ng01-183N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,641,712 - 108,642,426)(108,476,961 - 108,477,424)
sequence
gaattccttgtataaaattaaaatccaaaacagtacaggcatggtgttta
ccatatagaaggtactaaatagataagtagactttgtgaaatacaaaatt
atcctttcatatttattattttcaaatttatcctttctgggggcctgcaa
ggtggctgagtgggtaaaggtgcttgctgtcaagcccaaggacacgaatt
gcatccccagggacccacgtgatgtaaggaaagcactgacttaggcagat
tgtctatattgactctcatacgaaagtgggtgacaaattgtgctgaagaa
attacttctgagttataatggcaccttatatcagggcttatgagaaaaag
ataccgttatgctagtaacgccagtatcaatagcatgaagataacaggct
ttccctgttcttgttaacttagggtaacaccaggctcaccacatggagag
tagaatatagataggcaggctggatgaaaggaaaaagatgtaaggctgta
aaatagtcttaggaccgcctgtaactcgaaacacacaaccaaaagacaag
aatagcccaaaacatatacacattaaggggctgaagaaatggcttagctg
aaaaaataagaaataggtcacctttccacagactgacgcatggcgtaaca
gtgcacatacaaaggaatacatgtctttttttttttttttttcagtaaac
gtaagtacaatgctgatat
aatctccagcaaccacatggtggctcacaaccatctgtaatgggatctga
tgccctcttctggtgtgagtgaagacagagcactcatataaaataaatct
ttaaaaaaagagagtgccccaggatttgtgactatagtgctatgcacact
gactgaactgtctccttttcagttttgtcctggtgaatgatttattatga
gatgcagttaatcattttcatcatttgcccatatgagtatgaacagaaac
acaagcaatgaccatgcttttaaatttaaatttctagaactctgtaattt
aagtttttaggtctcagtgattgttacatattcaaagtgtgtcaagctga
ttgaaaattgtatttaatattagttattatgtacattttattggctactt
tggcttctaataaagaggtttttaattagagtgaaattaacatgtgtgta
tatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108641712_108642426
seq2: B6Ng01-183N18.b_47_765 (reverse)

seq1  ATATCAGCATTGTACTTACGTTTACTG---AAAAAAAAAAAAAAGACATG  47
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  ATATCAGCATTGTACTTACGTTTACTGAAAAAAAAAAAAAAAAAGACATG  50

seq1  TATTCCTTTGTATGTGCACTGTTACGCCATGCGTCAGTCTGTGGAAAGGT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTTGTATGTGCACTGTTACGCCATGCGTCAGTCTGTGGAAAGGT  100

seq1  GACCTA-TTCTTATTTTTTCAGCTAAGCCATTTCTTCAGCCCCTTAATGT  146
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATTTCTTATTTTTTCAGCTAAGCCATTTCTTCAGCCCCTTAATGT  150

seq1  GTATATGTTTTGGGCTATTCTTGTCTTTTGGTTGTGTGTTTCGAGTTACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTTTTGGGCTATTCTTGTCTTTTGGTTGTGTGTTTCGAGTTACA  200

seq1  GGCGGTCCTAAGACTATTTTACAGCCTTACATCTTTTTCCTTTCATCCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTCCTAAGACTATTTTACAGCCTTACATCTTTTTCCTTTCATCCAG  250

seq1  CCTGCCTATCTATATTCTACTCTCCATGTGGTGAGCCTGGTGTTACCCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTATCTATATTCTACTCTCCATGTGGTGAGCCTGGTGTTACCCTA  300

seq1  AGTTAACAAGAACAGGGAAAGCCTGTTATCTTCATGCTATTGATACTGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACAAGAACAGGGAAAGCCTGTTATCTTCATGCTATTGATACTGGC  350

seq1  GTTACTAGCATAACGGTATCTTTTTCTCATAAGCCCTGATATAAGGTGCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAGCATAACGGTATCTTTTTCTCATAAGCCCTGATATAAGGTGCC  400

seq1  ATTATAACTCAGAAGTAATTTCTTCAGCACAATTTGTCACCCACTTTCGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAACTCAGAAGTAATTTCTTCAGCACAATTTGTCACCCACTTTCGT  450

seq1  ATGAGAGTCAATATAGACAATCTGCCTAAGTCAGTGCTTTCCTTACATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGTCAATATAGACAATCTGCCTAAGTCAGTGCTTTCCTTACATCA  500

seq1  CGTGGGTCCCTGGGGATGCAATTCGTGTCCTTGGGCTTGACAGCAAGCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGTCCCTGGGGATGCAATTCGTGTCCTTGGGCTTGACAGCAAGCAC  550

seq1  CTTTACCCACTCAGCCACCTTGCAGGCCCCCAGAAAGGATAAATTTGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCACTCAGCCACCTTGCAGGCCCCCAGAAAGGATAAATTTGAAA  600

seq1  ATAATAAATATGAAAGGATAATTTTGTATTTCACAAAGTCTACTTATCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATATGAAAGGATAATTTTGTATTTCACAAAGTCTACTTATCTA  650

seq1  TTTAGTACCTTCTATATGGTAAACACCATGCCTGTACTGTTTTGGATTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTACCTTCTATATGGTAAACACCATGCCTGTACTGTTTTGGATTTT  700

seq1  AATTTTATACAAGGAATTC  715
      |||||||||||||||||||
seq2  AATTTTATACAAGGAATTC  719

seq1: chr3_108476961_108477424
seq2: B6Ng01-183N18.g_67_530

seq1  GAATTCAATCTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGG  50

seq1  ATCTGATGCCCTCTTCTGGTGTGAGTGAAGACAGAGCACTCATATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCCCTCTTCTGGTGTGAGTGAAGACAGAGCACTCATATAAAAT  100

seq1  AAATCTTTAAAAAAAGAGAGTGCCCCAGGATTTGTGACTATAGTGCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTAAAAAAAGAGAGTGCCCCAGGATTTGTGACTATAGTGCTATG  150

seq1  CACACTGACTGAACTGTCTCCTTTTCAGTTTTGTCCTGGTGAATGATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGACTGAACTGTCTCCTTTTCAGTTTTGTCCTGGTGAATGATTTA  200

seq1  TTATGAGATGCAGTTAATCATTTTCATCATTTGCCCATATGAGTATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGATGCAGTTAATCATTTTCATCATTTGCCCATATGAGTATGAAC  250

seq1  AGAAACACAAGCAATGACCATGCTTTTAAATTTAAATTTCTAGAACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACAAGCAATGACCATGCTTTTAAATTTAAATTTCTAGAACTCTG  300

seq1  TAATTTAAGTTTTTAGGTCTCAGTGATTGTTACATATTCAAAGTGTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAGTTTTTAGGTCTCAGTGATTGTTACATATTCAAAGTGTGTCA  350

seq1  AGCTGATTGAAAATTGTATTTAATATTAGTTATTATGTACATTTTATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTGAAAATTGTATTTAATATTAGTTATTATGTACATTTTATTGG  400

seq1  CTACTTTGGCTTCTAATAAAGAGGTTTTTAATTAGAGTGAAATTAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGGCTTCTAATAAAGAGGTTTTTAATTAGAGTGAAATTAACATG  450

seq1  TGTGTATATGTGTG  464
      ||||||||||||||
seq2  TGTGTATATGTGTG  464