BAC Information

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BAC

Clone NameB6Ng01-185C07
Chromosome3 (Build37)
Map Location 46,128,427 - 46,197,350
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849, LOC383850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185C07.bB6Ng01-185C07.g
ACCGA010334GA010335
length1,1621,088
definitionB6Ng01-185C07.b B6Ng01-185C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,196,192 - 46,197,350)(46,128,427 - 46,129,511)
sequence
gaattccattgcctagcatcttggtgcattcacactatcctaattatctt
aagaatctacaattttgagaagcagattattatttccttttcttttggag
tacagattattagaaacagctgctatgtattcagagttgggcatgggaga
tattagaagatatctctttttgaatgaaagaatcctcagtctccctaaag
aagacaaatagatggaatcctgaaaaatatctgcctatttaaaaaaaata
attgggatgaacatcaagagttaatattaaaactctcaaagaaaaaccaa
aggggcatttatctttatgtggactaaggcattatctactcgctatttac
tgcttcttaccatccatcccagggtatactcagccctcaaactacagctc
ataggagaaatcacattgtccctagatacaatgtgggtgagacagagagt
gggttaagaattctaatatagtcaccagagaaaatcagtgtcagaaagaa
ttggacattatagtaagaaagtgtgaggaagtgaatgcaagtcactaaaa
tcaagtcagtttcataatagagaagcttaagccaaacatagctgtcacaa
atgcattcaaaaccaaacatccaaagtaatgaaaagtatatcatacttca
attattcaggggtaaaattaaaattaaaatttattatattataaaaagaa
cttgactatataaactccttaataccaatattatctaataaatataataa
actggagtatactgtcatacagaaacaattatttaaaaaatacataaaga
aaacacccatattttttgctagttcatataaagagactaattttttacat
agacaaaaagggaaaagaatgaactcagatattttcaacaagtacttcaa
aaattaaaattaaaattaaaattagaaataaacagaagggatacatacat
acatacacacaaacatatatagaaattgtaatatataacatatatatttt
ttacattatattatatgtataattttattctagcatataattctattata
taaggaaatatacacatatatatttataaaatataaacttattatgtgta
tataatcttaatacaatatactatacttatatccttatataagtttttca
aaaaaaatattt

gaattccattaaggccatactaattaatacatttaatagccagtagaagt
tataatttctttttaattgtttgaattctatttgtcagacagggattgaa
tatgctatatattcaagattaggtgcattcacatgtaaatgctactaaag
ttgtatgtaacctcccacaattgcaatatttttaatttaaaacaggtctt
ttagtaagagtaaaaataaatttatccggcccatcacaaatgaattaaaa
cagaataatagataatataaatgtaaaaataatattcattgatttttctt
ttgcttttatgttttgttagcccacagatatattataattgaaatattat
aatgagatttactttgtactactgaatactgcaaagcataataacttcaa
atatgaataaaagtatatgtggttcagtcttagtgcttggagtgaattga
gcacataatctcccatttaaaactcttttctaatttgaatttcagtgtac
attagaaatccaaatgtgttttttttttccttcttacgtcaagtgctttt
tccagtgctggacttcaaatgagagtcgtgggtgtccttagtgagtctgt
cactgctcagctgtcaactcatgcacttaaatgctttgccttctgtgggc
atttgcatctggtccttcatcagccatcgatgttcacttctgtcccctgt
gcagcattgaggatactgtgtctgagctgtgtcacatattgtatcttgta
actcttatattcttcatgacctgaataacctactttctagatgcctggag
ttatttctccagtgtaaagtaggtgctacaatgctttagagatgaacagc
ttagagtagttaactaaggctcacaacagagaaacgcatccatcttttca
agcagccttcttactgacagcagtgcaaaaatcataggaagtttaaaaat
taataataaaacagtctgaaattgttatttttcttattctactatttctc
tggtaggatataaatcttaatatattacaaatccatttcatgagcaccat
gtatttttgagtcatagaaaaccttgatactaaatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46196192_46197350
seq2: B6Ng01-185C07.b_42_1203 (reverse)

seq1  AAATATTTTTT----AAAAATTATATAAAGATATATGTATATTATATTGT  46
      |||||||||||    |||| |||||||| |||||| ||||| ||||||||
seq2  AAATATTTTTTTTGAAAAACTTATATAAGGATATAAGTATAGTATATTGT  50

seq1  ATTAGGA-TATATACACAT-ATAAATTTATATTTTATAAATATATATGTG  94
      |||| || ||||||||||| |||| |||||||||||||||||||||||||
seq2  ATTAAGATTATATACACATAATAAGTTTATATTTTATAAATATATATGTG  100

seq1  TATATATCCTAATATAATAGAATTATATTGGCTAGAATAAAATTTAATAC  144
      ||||| |||| |||||||||||||||||  ||||||||||||||  ||||
seq2  TATATTTCCTTATATAATAGAATTATAT--GCTAGAATAAAATT--ATAC  146

seq1  ATATAATATAATGT-AAAAATATATATGTTATATATTACAATTTCTATAT  193
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATATAATATAATGTAAAAAATATATATGTTATATATTACAATTTCTATAT  196

seq1  ATGTTTGTGTGTATGTATGTATGTATCCCTTCTGTTTATTTCTAATTTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGTGTATGTATGTATGTATCCCTTCTGTTTATTTCTAATTTTA  246

seq1  ATTTTAATTTTAATTTTTGAAGTACTTGTTGAAAATATCTGAGTTCATTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTTAATTTTTGAAGTACTTGTTGAAAATATCTGAGTTCATTC  296

seq1  TTTTCCCTTTTTGTCTATGTAAAAAATTAGTCTCTTTATATGAACTAGCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTTTTGTCTATGTAAAAAATTAGTCTCTTTATATGAACTAGCA  346

seq1  AAAAATATGGGTGTTTTCTTTATGTATTTTTTAAATAATTGTTTCTGTAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGGGTGTTTTCTTTATGTATTTTTTAAATAATTGTTTCTGTAT  396

seq1  GACAGTATACTCCAGTTTATTATATTTATTAGATAATATTGGTATTAAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATACTCCAGTTTATTATATTTATTAGATAATATTGGTATTAAGG  446

seq1  AGTTTATATAGTCAAGTTCTTTTTATAATATAATAAATTTTAATTTTAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATATAGTCAAGTTCTTTTTATAATATAATAAATTTTAATTTTAAT  496

seq1  TTTACCCCTGAATAATTGAAGTATGATATACTTTTCATTACTTTGGATGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCCTGAATAATTGAAGTATGATATACTTTTCATTACTTTGGATGT  546

seq1  TTGGTTTTGAATGCATTTGTGACAGCTATGTTTGGCTTAAGCTTCTCTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGAATGCATTTGTGACAGCTATGTTTGGCTTAAGCTTCTCTAT  596

seq1  TATGAAACTGACTTGATTTTAGTGACTTGCATTCACTTCCTCACACTTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACTGACTTGATTTTAGTGACTTGCATTCACTTCCTCACACTTTC  646

seq1  TTACTATAATGTCCAATTCTTTCTGACACTGATTTTCTCTGGTGACTATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATAATGTCCAATTCTTTCTGACACTGATTTTCTCTGGTGACTATA  696

seq1  TTAGAATTCTTAACCCACTCTCTGTCTCACCCACATTGTATCTAGGGACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTCTTAACCCACTCTCTGTCTCACCCACATTGTATCTAGGGACA  746

seq1  ATGTGATTTCTCCTATGAGCTGTAGTTTGAGGGCTGAGTATACCCTGGGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTCTCCTATGAGCTGTAGTTTGAGGGCTGAGTATACCCTGGGA  796

seq1  TGGATGGTAAGAAGCAGTAAATAGCGAGTAGATAATGCCTTAGTCCACAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTAAGAAGCAGTAAATAGCGAGTAGATAATGCCTTAGTCCACAT  846

seq1  AAAGATAAATGCCCCTTTGGTTTTTCTTTGAGAGTTTTAATATTAACTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAATGCCCCTTTGGTTTTTCTTTGAGAGTTTTAATATTAACTCT  896

seq1  TGATGTTCATCCCAATTATTTTTTTTAAATAGGCAGATATTTTTCAGGAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTCATCCCAATTATTTTTTTTAAATAGGCAGATATTTTTCAGGAT  946

seq1  TCCATCTATTTGTCTTCTTTAGGGAGACTGAGGATTCTTTCATTCAAAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTATTTGTCTTCTTTAGGGAGACTGAGGATTCTTTCATTCAAAAA  996

seq1  GAGATATCTTCTAATATCTCCCATGCCCAACTCTGAATACATAGCAGCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCTTCTAATATCTCCCATGCCCAACTCTGAATACATAGCAGCTG  1046

seq1  TTTCTAATAATCTGTACTCCAAAAGAAAAGGAAATAATAATCTGCTTCTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATAATCTGTACTCCAAAAGAAAAGGAAATAATAATCTGCTTCTC  1096

seq1  AAAATTGTAGATTCTTAAGATAATTAGGATAGTGTGAATGCACCAAGATG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTAGATTCTTAAGATAATTAGGATAGTGTGAATGCACCAAGATG  1146

seq1  CTAGGCAATGGAATTC  1159
      ||||||||||||||||
seq2  CTAGGCAATGGAATTC  1162


seq1: chr3_46128427_46129511
seq2: B6Ng01-185C07.g_69_1156

seq1  GAATTCCATTAAGGCCATACTAATTAATACATTTAATAGCCAGTAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAGGCCATACTAATTAATACATTTAATAGCCAGTAGAAGT  50

seq1  TATAATTTCTTTTTAATTGTTTGAATTCTATTTGTCAGACAGGGATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTCTTTTTAATTGTTTGAATTCTATTTGTCAGACAGGGATTGAA  100

seq1  TATGCTATATATTCAAGATTAGGTGCATTCACATGTAAATGCTACTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTATATATTCAAGATTAGGTGCATTCACATGTAAATGCTACTAAAG  150

seq1  TTGTATGTAACCTCCCACAATTGCAATATTTTTAATTTAAAACAGGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTAACCTCCCACAATTGCAATATTTTTAATTTAAAACAGGTCTT  200

seq1  TTAGTAAGAGTAAAAATAAATTTATCCGGCCCATCACAAATGAATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGAGTAAAAATAAATTTATCCGGCCCATCACAAATGAATTAAAA  250

seq1  CAGAATAATAGATAATATAAATGTAAAAATAATATTCATTGATTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAATAGATAATATAAATGTAAAAATAATATTCATTGATTTTTCTT  300

seq1  TTGCTTTTATGTTTTGTTAGCCCACAGATATATTATAATTGAAATATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTATGTTTTGTTAGCCCACAGATATATTATAATTGAAATATTAT  350

seq1  AATGAGATTTACTTTGTACTACTGAATACTGCAAAGCATAATAACTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATTTACTTTGTACTACTGAATACTGCAAAGCATAATAACTTCAA  400

seq1  ATATGAATAAAAGTATATGTGGTTCAGTCTTAGTGCTTGGAGTGAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATAAAAGTATATGTGGTTCAGTCTTAGTGCTTGGAGTGAATTGA  450

seq1  GCACATAATCTCCCATTTAAAACTCTTTTCTAATTTGAATTTCAGTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAATCTCCCATTTAAAACTCTTTTCTAATTTGAATTTCAGTGTAC  500

seq1  ATTAGAAATCCAAATGTGTTTTTTTTTTCCTTCTTACGTCAAGTGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATCCAAATGTGTTTTTTTTTTCCTTCTTACGTCAAGTGCTTTT  550

seq1  TCCAGTGCTGGACTTCAAATGAGAGTCGTGGGTGTCCTTAGTGAGTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCTGGACTTCAAATGAGAGTCGTGGGTGTCCTTAGTGAGTCTGT  600

seq1  CACTGCTCAGCTGTCAACTCATGCACTTAAATGCTTTGCCTTCTGTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCAGCTGTCAACTCATGCACTTAAATGCTTTGCCTTCTGTGGGC  650

seq1  ATTTGCATCTGGTCCTTCATCAGCCATCGATGTTCACTTCTGTCCCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATCTGGTCCTTCATCAGCCATCGATGTTCACTTCTGTCCCCTGT  700

seq1  GCAGCATTGAGGATACTGTGTCTGAGCTGTGTCACATATTGTATCTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTGAGGATACTGTGTCTGAGCTGTGTCACATATTGTATCTTGTA  750

seq1  ACTCTTATATTCTTCATGACCTGAATAACCTACTTTCTAGATGCCTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTATATTCTTCATGACCTGAATAACCTACTTTCTAGATGCCTGGAG  800

seq1  TTATTTCTCCAGTGTAAAGTAGGTGCTACAATGCTTTAGAGATGAACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTCCAGTGTAAAGTAGGTGCTACAATGCTTTAGAGATGAACAGC  850

seq1  TTAGAGTAGTTAACT-AGGCTCACAACAGAGAAACGCATCCATCTTTTCA  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  TTAGAGTAGTTAACTAAGGCTCACAACAGAGAAACGCATCCATCTTTTC-  899

seq1  AAGCAGCCTTCTTACTGACAGCAGTGCAAAAATCATAGGAAG-TTAAAAA  948
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGCAGCCTTCTTACTGACAGCAGTGCAAAAATCATAGGAAGTTTAAAAA  949

seq1  TTAATAAATAAAACAGTCTGAAA-TGTTA-TTTTCTTA-TCTACTATTTC  995
      ||||| ||||||||||||||||| ||||| |||||||| |||||||||||
seq2  TTAAT-AATAAAACAGTCTGAAATTGTTATTTTTCTTATTCTACTATTTC  998

seq1  TCTGTTAGGATATAAATCTTAATATATTACAAATCAATTCAATGAGCACC  1045
      |||| |||||||||||||||||||||||||||||| |||  |||||||||
seq2  TCTGGTAGGATATAAATCTTAATATATTACAAATCCATTTCATGAGCACC  1048

seq1  AATGTATGTTTGAGTCATAGAAAA-CTTGATACTAAATCTA  1085
       |||||| |||||||||||||||| ||||||||||||||||
seq2  -ATGTATTTTTGAGTCATAGAAAACCTTGATACTAAATCTA  1088


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