BAC Information

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BAC

Clone NameB6Ng01-185I12
Chromosome3 (Build37)
Map Location 78,953,176 - 79,115,083
singlet/doubletdoublet
Overlap geneRapgef2, LOC100041741
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185I12.bB6Ng01-185I12.g
ACCGA010615GA010616
length6251,071
definitionB6Ng01-185I12.b B6Ng01-185I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,114,459 - 79,115,083)(78,953,176 - 78,954,238)
sequence
gaattctctagggaatgtgaattatgcttttaccttatttcccatcagat
taaaagtaatatacatggttagaatatcagcatttcctccacacattaga
gagtcataatcagcgccaatgtgatacattgaagtttttttttccccatc
agtcttttcttaattcctttagacacagacagctgagattaatgcaaagt
gaagcgttcctgacagaccacttaaatgatgcatccactctgttggactt
agacatgagcaaaaatggctaccacctgtcatagaggcccttgcaaggct
gtaaggccccaggagcagagattgtgtgcttagtgttacagagaactcag
ctataatgctctaagcatgttagctcttcataaggtttatgcagcagcag
caagaaagtggtagactctctctctctctctctctctctctctctctctc
tctctctctctctctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtatgta
aaaacaattaatcacagcagaaggactcagatggacaacaggacagatgc
ttcttgtttttttctacccctaactagaattactctctcctgatggaaat
aaaatatggtaccatacgtgtggga
gaattctgttgaattccttcatgccttttccttctaacatatttactata
tctattcctctgacattgaggaaaatagtatgttctttttttttttcggt
aaataatgcaagtttacttagttaaatttgtaaaagttagaaatacacac
caaaatttaaataaaaattaaattcacaagataattgcttctctattcac
catctctcaaattacccattaagctcatttcattgataagacacattatg
tttttttttaattaggtattttcctcatttacatttccaatgctatccca
aaagtcccccataccctcccccccacttccctacccacccactcccactt
tttggccctggcattcccctgtactggggcatataaagtttgcaagtcca
atgggcctctctttccagtgatggccgactaggccatcttctgatacata
tgcagctagagtcaagagctccaggatactgggtagttcatattgttgtt
ccacctatagggttgcagatccctttagctccttgggtactttctctagc
tcctccattgggggccctgtgatccatccaatagctgactgtgagcatcc
acttatgtgtttgctaggccccggcgtagtctcacaagagacagctatat
cagtatgttcttcttatcggtatttattactcatatttagaactttactt
ggttcttaatatttaaccatggctcacaataagcttccaaaacagttaag
cccaaaagatacaagaaaactatacaattatcttttgttagaagaggtct
gtaagacacaaagttagagggctacaaggctacagaagtctagttttcaa
ataccactatgcctgagtagtgactcattgtctcttctcctcacagaaag
ggaaaatttacagaaataggggatttgacagtgagaaggaagaaaagaag
ttatttcttttgaaaactggaaaaaaaaaaaaaaatcaagaaaactttgc
aaatcccgattcctatattttatttgctccccaaacaagtgaacattaaa
aatcctatgtctgaagcgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79114459_79115083
seq2: B6Ng01-185I12.b_41_665 (reverse)

seq1  TCCCTCACGTTTGGTACCATATTCTATTTCCATCAGGGAATGGTAATTCT  50
      |||| ||||| |||||||||||| |||||||||||||  |  ||||||||
seq2  TCCCACACGTATGGTACCATATTTTATTTCCATCAGGAGAGAGTAATTCT  50

seq1  AGTTAGGGGTAGAATGTAACAAGAGCCATCTGTCCTGTTCTCCATCTGAG  100
      ||||||||||||||   |||||||  ||||||||||||| ||||||||||
seq2  AGTTAGGGGTAGAAAAAAACAAGAAGCATCTGTCCTGTTGTCCATCTGAG  100

seq1  TCCTTCTGCTGTGATTAATTGTTTTTACATACACACACAGACACACGCAC  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTTCTGCTGTGATTAATTGTTTTTACATACACACACAGACACACACAC  150

seq1  ACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  200

seq1  AGAGAGAGAGTCTACCACTTTCTTGCTGCTGCTGCATAAACCTTATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGTCTACCACTTTCTTGCTGCTGCTGCATAAACCTTATGAAG  250

seq1  AGCTAACATGCTTAGAGCATTATAGCTGAGTTCTCTGTAACACTAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACATGCTTAGAGCATTATAGCTGAGTTCTCTGTAACACTAAGCAC  300

seq1  ACAATCTCTGCTCCTGGGGCCTTACAGCCTTGCAAGGGCCTCTATGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCTGCTCCTGGGGCCTTACAGCCTTGCAAGGGCCTCTATGACAG  350

seq1  GTGGTAGCCATTTTTGCTCATGTCTAAGTCCAACAGAGTGGATGCATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCCATTTTTGCTCATGTCTAAGTCCAACAGAGTGGATGCATCAT  400

seq1  TTAAGTGGTCTGTCAGGAACGCTTCACTTTGCATTAATCTCAGCTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGGTCTGTCAGGAACGCTTCACTTTGCATTAATCTCAGCTGTCTG  450

seq1  TGTCTAAAGGAATTAAGAAAAGACTGATGGGGAAAAAAAAACTTCAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAAGGAATTAAGAAAAGACTGATGGGGAAAAAAAAACTTCAATGT  500

seq1  ATCACATTGGCGCTGATTATGACTCTCTAATGTGTGGAGGAAATGCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTGGCGCTGATTATGACTCTCTAATGTGTGGAGGAAATGCTGAT  550

seq1  ATTCTAACCATGTATATTACTTTTAATCTGATGGGAAATAAGGTAAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACCATGTATATTACTTTTAATCTGATGGGAAATAAGGTAAAAGC  600

seq1  ATAATTCACATTCCCTAGAGAATTC  625
      |||||||||||||||||||||||||
seq2  ATAATTCACATTCCCTAGAGAATTC  625

seq1: chr3_78953176_78954238
seq2: B6Ng01-185I12.g_66_1136

seq1  GAATTCTGTTGAATTCCTTCATGCCTTTTCCTTCTAACATATTTACTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGAATTCCTTCATGCCTTTTCCTTCTAACATATTTACTATA  50

seq1  TCTATTCCTCTGACATTGAGGAAAATAGTATGTTCTTTTTTTTTTTCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCTCTGACATTGAGGAAAATAGTATGTTCTTTTTTTTTTTCGGT  100

seq1  AAATAATGCAAGTTTACTTAGTTAAATTTGTAAAAGTTAGAAATACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGCAAGTTTACTTAGTTAAATTTGTAAAAGTTAGAAATACACAC  150

seq1  CAAAATTTAAATAAAAATTAAATTCACAAGATAATTGCTTCTCTATTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTAAATAAAAATTAAATTCACAAGATAATTGCTTCTCTATTCAC  200

seq1  CATCTCTCAAATTACCCATTAAGCTCATTTCATTGATAAGACACATTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCAAATTACCCATTAAGCTCATTTCATTGATAAGACACATTATG  250

seq1  TTTTTTTTTAATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCA  300

seq1  AAAGTCCCCCATACCCTCCCCCCCACTTCCCTACCCACCCACTCCCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCCCATACCCTCCCCCCCACTTCCCTACCCACCCACTCCCACTT  350

seq1  TTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCA  400

seq1  ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTCTGATACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTCTGATACATA  450

seq1  TGCAGCTAGAGTCAAGAGCTCCAGGATACTGGGTAGTTCATATTGTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTAGAGTCAAGAGCTCCAGGATACTGGGTAGTTCATATTGTTGTT  500

seq1  CCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGC  550

seq1  TCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCC  600

seq1  ACTTATGTGTTTGCTAGGCCCCGGCGTAGTCTCACAAGAGACAGCTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTGTTTGCTAGGCCCCGGCGTAGTCTCACAAGAGACAGCTATAT  650

seq1  CAGTATGTTCTTCTTATCGGTATTTATTACTCATATTTAGAAC-TTACTT  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGTATGTTCTTCTTATCGGTATTTATTACTCATATTTAGAACTTTACTT  700

seq1  GGTTCTTAATA-TTAACCATGGCTCACAATAAGCTTCCAAAACAGTTAAG  748
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTAATATTTAACCATGGCTCACAATAAGCTTCCAAAACAGTTAAG  750

seq1  CCCAAAAGATACAAGAAAACTATACAATTATCTTTTGTTAGAAGAGGTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGATACAAGAAAACTATACAATTATCTTTTGTTAGAAGAGGTCT  800

seq1  GTAAGACACAAAGTTAGAGGGCTACAAGGCTACAGAAGTCTAGTTTTCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACACAAAGTTAGAGGGCTACAAGGCTACAGAAGTCTAGTTTTCAA  850

seq1  ATACCACTATGCCTGAGTAGTGACTCATTGTCTCTTCTCCTCACAAGAAA  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATACCACTATGCCTGAGTAGTGACTCATTGTCTCTTCTCCTCAC-AGAAA  899

seq1  GGGAAAA-TTACAGAAATAGGGGATTTGACAGTGAGAAAGGAAG-AAAGA  946
      ||||||| |||||||||||||||||||||||||||| ||||||| |||||
seq2  GGGAAAATTTACAGAAATAGGGGATTTGACAGTGAG-AAGGAAGAAAAGA  948

seq1  AGTTATT--CTTTGAAAACTG--AAAAAAAAAAAAAATCA--GAAACTTT  990
      |||||||   |||||||||||  |||||||||||||||||   |||||||
seq2  AGTTATTTCTTTTGAAAACTGGAAAAAAAAAAAAAAATCAAGAAAACTTT  998

seq1  GCAAAT-CCGATTCCTAATATTTTA-TTGCTCCCCAAACAAGTGACATTT  1038
      |||||| ||||||||| |||||||| |||||||||||||||||||   ||
seq2  GCAAATCCCGATTCCT-ATATTTTATTTGCTCCCCAAACAAGTGAACATT  1047

seq1  AAAAATCCTATGGTCTGGAGCGAAG  1063
      ||||||||||| ||||| |||||||
seq2  AAAAATCCTAT-GTCTGAAGCGAAG  1071