BAC Information

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BAC

Clone NameB6Ng01-187N22
Chromosome3 (Build37)
Map Location 16,930,570 - 16,931,646
singlet/doubletsinglet
Overlap genenone
Upstream geneYthdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187N22.bB6Ng01-187N22.g
ACCGA012326GA012327
length1,0921,075
definitionB6Ng01-187N22.b B6Ng01-187N22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccatttttaaatagggttatttggtt
ttctggagtctaacttcttgagttctttgtatatattggatattagccct
ctatcaaatttaggattggtaaagatcttttcccaatatttttgttacct
tttttgtcttgtttatagtgtcactcaccttacaaaagcttttcaatttt
atgaggtcccatttgtaaattcttgatctttgggcataagccattggtgt
tctgtgcaggaaaatttccccttttccaatgtgtttgaggttctttttct
gctttctctattaaattcattgtatctggttttgtttggaggtccttgat
ccacttggacttgagctttgtgcaaggagatagatatggattgatttgcg
atcttcaaaatgcagaccactatttggaccagcactgttttttgaaaatg
ctgtcttttttccactggaggtttttggttcctttgtcaaagatcaaatg
acaataggtgtgtgggttcatgtctggatcttcaattctcttccattgat
ctacctgtctgtctctgtagcaatatcatgtggtttttatcactattact
ctgtaatatagcttgaggtcagggaaggtgattcccccagaagttctttt
attgttcaaaatggttttgatatcctgagtttttgttactcaagataaat
ttaagaattgtcctatctttgtaaagaattgaattggaattttaatggga
attgaattgaatctgtagattgctttaggtaaactggccatctttattat
gctaatcctgctgatccatgaacaggagagatctttctatcttttgaggt
gttcttcaattttcttttttcagaaacttgaagttcttgtcatatagatc
tttcacttgcttgggttagcaatcacatgagtgtattttcataatatttt
gtgactattgcaaaagggtgtcatttccctaatttcctttctcagctcat
ttaccatttaagtaaaggaaagctatagattgtgttttgaatttcatttt
catcttgaaaatttgctgaaagttgcctatcagcctgtaggg
gaattcaagtgactgagaaataagcccacttgcacggtatgatatttaga
atagcctggagtgtgatactgcaatctcatctgggagtaggctgtatcag
tacatatgctgagagaagggaatataaaatgactcttctacatgtactgt
gctctcgtggcttttacaatacattcacggagctatgtgttcttgtgctg
aaccttagtaatgaatgaaactaaattcaaacgaattgcaagcagaaaaa
ctgttttaacttccatttctgtcatttctaatttgactagcacaggcttg
gatcaataggtatttccatcagcacacacactttcaaggaaagcatacca
aagcaagaagcttaaagcagaaaatgcaattaaaaagttgagatttttta
atgaaaaatttatttacctttaaatatgtatgcatgccaagtgcagtttc
acatggagaaaagaggggaaagttggatgctcagcagccagctttactaa
aagttgtgtgcagcctagtaatggtgctaggagctgagataagaattctg
gaagaggaacatgttctcttagctgctcagttttatttttattctctaaa
atcaagctttatataatgcttttgttaacaacatcagtacatccatcttt
ccatctattagtttattccttcaagaattattgatggagtatatactaga
ctgtaaagattacctaactttttatagttgactgtgaaaaacatgtttct
tgttctcatgaaatatttataaatatcacatatcctcaaaacatttgttt
gagaatttctgaattatatttcaattattgtcaatttaaaaaaaaaaaaa
accttaagatctccagggtctgtgcactgcaccattttaaggagacacaa
tgtttagtaagtctctgaacttattacgcctgacctcacatgtaggcatt
agattcaaccatagctgaaagcactggaaatttcaacgagagtttgggaa
caaactatgtctctgttgctttcagtactttgagtaaaattattaggcaa
aaaacccagacatgatatgttgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16930570_16931646
seq2: B6Ng01-187N22.g_67_1141 (reverse)

seq1  TGACAACATTAATCATTGTTCTGGGTTTTTTGCCTAATAATTTTTAACTT  50
      |||||||||  |||||   |||||||||||||||||||||||||  || |
seq2  TGACAACAT--ATCAT--GTCTGGGTTTTTTGCCTAATAATTTT--AC-T  43

seq1  CAAAGTACTG-AAGCAACAGAGACATAGTTTGTT-CCAAACTCTCGTTG-  97
      |||||||||| ||||||||||||||||||||||| |||||||||||||| 
seq2  CAAAGTACTGAAAGCAACAGAGACATAGTTTGTTCCCAAACTCTCGTTGA  93

seq1  AATTTCCAGTGCTTTCAGCTATGGTTGAATCTAATGCCTACATGTGAGGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGTGCTTTCAGCTATGGTTGAATCTAATGCCTACATGTGAGGT  143

seq1  CAGGCGTAATAAGTTCAGAGACTTACT-AACATTGTGTCTCCTTAAAATG  196
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGGCGTAATAAGTTCAGAGACTTACTAAACATTGTGTCTCCTTAAAATG  193

seq1  GTGCAGTGCACAGACCCTGGAGATCTTTAAGG--TTTTTTTTTTTTAAAT  244
      ||||||||||||||||||||||||| ||||||  ||||||||||||||||
seq2  GTGCAGTGCACAGACCCTGGAGATC-TTAAGGTTTTTTTTTTTTTTAAAT  242

seq1  TGACAATAATTGAAATATAATTCAGAAATTCTCAAACAAATGTTTTGAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAATTGAAATATAATTCAGAAATTCTCAAACAAATGTTTTGAGG  292

seq1  ATATGTGATATTTATAAATATTTCATGAGAACAAGAAACATGTTTTTCAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGATATTTATAAATATTTCATGAGAACAAGAAACATGTTTTTCAC  342

seq1  AGTCAACTATAAAAAGTTAGGTAATCTTTACAGTCTAGTATATACTCCAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTATAAAAAGTTAGGTAATCTTTACAGTCTAGTATATACTCCAT  392

seq1  CAATAATTCTTGAAGGAATAAACTAATAGATGGAAAGATGGATGTACTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTCTTGAAGGAATAAACTAATAGATGGAAAGATGGATGTACTGA  442

seq1  TGTTGTTAACAAAAGCATTATATAAAGCTTGATTTTAGAGAATAAAAATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAACAAAAGCATTATATAAAGCTTGATTTTAGAGAATAAAAATA  492

seq1  AAACTGAGCAGCTAAGAGAACATGTTCCTCTTCCAGAATTCTTATCTCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGCAGCTAAGAGAACATGTTCCTCTTCCAGAATTCTTATCTCAG  542

seq1  CTCCTAGCACCATTACTAGGCTGCACACAACTTTTAGTAAAGCTGGCTGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGCACCATTACTAGGCTGCACACAACTTTTAGTAAAGCTGGCTGC  592

seq1  TGAGCATCCAACTTTCCCCTCTTTTCTCCATGTGAAACTGCACTTGGCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATCCAACTTTCCCCTCTTTTCTCCATGTGAAACTGCACTTGGCAT  642

seq1  GCATACATATTTAAAGGTAAATAAATTTTTCATTAAAAAATCTCAACTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATATTTAAAGGTAAATAAATTTTTCATTAAAAAATCTCAACTTT  692

seq1  TTAATTGCATTTTCTGCTTTAAGCTTCTTGCTTTGGTATGCTTTCCTTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCATTTTCTGCTTTAAGCTTCTTGCTTTGGTATGCTTTCCTTGA  742

seq1  AAGTGTGTGTGCTGATGGAAATACCTATTGATCCAAGCCTGTGCTAGTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTGTGCTGATGGAAATACCTATTGATCCAAGCCTGTGCTAGTCA  792

seq1  AATTAGAAATGACAGAAATGGAAGTTAAAACAGTTTTTCTGCTTGCAATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAATGACAGAAATGGAAGTTAAAACAGTTTTTCTGCTTGCAATT  842

seq1  CGTTTGAATTTAGTTTCATTCATTACTAAGGTTCAGCACAAGAACACATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGAATTTAGTTTCATTCATTACTAAGGTTCAGCACAAGAACACATA  892

seq1  GCTCCGTGAATGTATTGTAAAAGCCACGAGAGCACAGTACATGTAGAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGTGAATGTATTGTAAAAGCCACGAGAGCACAGTACATGTAGAAGA  942

seq1  GTCATTTTATATTCCCTTCTCTCAGCATATGTACTGATACAGCCTACTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTATATTCCCTTCTCTCAGCATATGTACTGATACAGCCTACTCC  992

seq1  CAGATGAGATTGCAGTATCACACTCCAGGCTATTCTAAATATCATACCGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGATTGCAGTATCACACTCCAGGCTATTCTAAATATCATACCGT  1042

seq1  GCAAGTGGGCTTATTTCTCAGTCACTTGAATTC  1077
      |||||||||||||||||||||||||||||||||
seq2  GCAAGTGGGCTTATTTCTCAGTCACTTGAATTC  1075